Wall clock time and date at job start Tue Mar 31 2020 02:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47464 * 2 1 4 4 C 1.34258 * 125.75909 * 124.99531 * 3 2 1 5 5 C 1.38035 * 107.41861 * 179.97438 * 4 3 2 6 6 C 1.47427 * 126.41633 * 179.97438 * 5 4 3 7 7 O 1.21599 * 120.00622 * 214.11767 * 6 5 4 8 8 N 1.34778 * 119.99655 * 34.12003 * 6 5 4 9 9 C 1.47425 * 125.64944 * 355.58970 * 8 6 5 10 10 C 1.54911 * 104.83245 * 155.90711 * 9 8 6 11 11 C 1.55154 * 101.61595 * 36.99583 * 10 9 8 12 12 O 1.42898 * 110.72190 * 82.87604 * 11 10 9 13 13 C 1.50700 * 110.72185 * 206.15063 * 11 10 9 14 14 H 1.08004 * 119.99697 * 0.02562 * 13 11 10 15 15 C 1.37877 * 120.00275 * 179.97438 * 13 11 10 16 16 N 1.31513 * 119.99702 * 0.02562 * 15 13 11 17 17 Si 1.86793 * 120.00030 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47499 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47020 * 120.00458 * 17 15 13 20 20 H 1.48497 * 109.47723 * 240.00245 * 17 15 13 21 21 C 1.47027 * 125.64836 * 175.63692 * 8 6 5 22 22 C 1.41296 * 107.17370 * 0.23126 * 5 4 3 23 23 C 1.50690 * 125.99084 * 179.73809 * 22 5 4 24 24 N 1.30446 * 108.01813 * 359.61238 * 22 5 4 25 25 H 1.09002 * 109.46984 * 300.00546 * 1 2 3 26 26 H 1.09000 * 109.47244 * 59.99945 * 1 2 3 27 27 H 1.09000 * 109.47364 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47261 * 240.00129 * 2 1 3 29 29 H 1.09006 * 109.47165 * 119.99361 * 2 1 3 30 30 H 1.07998 * 126.28469 * 0.02562 * 4 3 2 31 31 H 1.09000 * 110.36380 * 37.07101 * 9 8 6 32 32 H 1.09000 * 110.36579 * 274.74974 * 9 8 6 33 33 H 1.09007 * 111.00164 * 155.08103 * 10 9 8 34 34 H 1.08992 * 111.00706 * 278.90130 * 10 9 8 35 35 H 0.96703 * 113.99983 * 179.97438 * 12 11 10 36 36 H 0.97000 * 119.99745 * 179.97438 * 16 15 13 37 37 H 1.08997 * 109.88318 * 300.43296 * 21 8 6 38 38 H 1.08996 * 109.88489 * 61.44765 * 21 8 6 39 39 H 1.09002 * 109.47134 * 89.99791 * 23 22 5 40 40 H 1.08997 * 109.47747 * 209.99688 * 23 22 5 41 41 H 1.09004 * 109.47534 * 330.00205 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8690 1.9126 0.8925 5 6 3.0715 3.2308 0.5363 6 6 3.9326 4.2034 1.2334 7 8 3.6147 5.3763 1.2758 8 7 5.0724 3.7924 1.8238 9 6 5.5305 2.3950 1.9284 10 6 7.0678 2.4928 2.0921 11 6 7.2076 3.7585 2.9785 12 8 7.0204 3.4334 4.3574 13 6 8.5459 4.4164 2.7613 14 1 9.2494 3.9910 2.0608 15 6 8.8719 5.5619 3.4559 16 7 8.0151 6.0801 4.3085 17 14 10.5311 6.3769 3.1871 18 1 11.3063 5.6028 2.1846 19 1 10.3277 7.7624 2.6927 20 1 11.2782 6.4140 4.4700 21 6 6.0644 4.6634 2.4711 22 6 2.2941 3.4751 -0.6180 23 6 2.1971 4.7833 -1.3596 24 7 1.6773 2.3691 -0.9307 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 3.3138 1.4022 1.7339 31 1 5.2798 1.8448 1.0214 32 1 5.0859 1.9143 2.7998 33 1 7.4631 1.6138 2.6012 34 1 7.5551 2.6355 1.1277 35 1 7.0982 4.1904 4.9541 36 1 8.2446 6.8858 4.7975 37 1 6.4537 5.3819 1.7498 38 1 5.6056 5.1900 3.3079 39 1 2.9664 4.8216 -2.1309 40 1 1.2139 4.8664 -1.8228 41 1 2.3409 5.6082 -0.6618 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600064510.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:17 Heat of formation + Delta-G solvation = -33.573805 kcal Electronic energy + Delta-G solvation = -24041.422412 eV Core-core repulsion = 20535.958760 eV Total energy + Delta-G solvation = -3505.463652 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.47930 -40.62614 -38.78022 -36.10241 -35.69913 -34.15710 -32.59329 -31.87718 -30.98395 -29.47650 -28.72378 -26.99485 -25.06255 -23.86281 -22.57086 -21.67368 -21.05577 -19.92252 -19.14060 -18.15559 -17.39439 -17.30577 -16.78842 -16.36318 -16.12300 -15.92451 -15.27326 -15.08019 -14.75805 -14.70725 -14.56607 -14.07208 -13.94728 -13.59421 -13.46477 -13.28873 -13.15070 -13.06915 -12.86558 -12.82938 -12.48079 -12.31739 -12.28417 -12.23137 -12.07347 -11.74132 -11.20043 -10.94399 -10.63583 -10.33134 -10.25048 -9.74021 -9.43704 -8.26244 -6.41874 0.57473 1.11248 1.40267 1.42172 1.44347 1.54787 2.09132 2.32149 2.41138 3.00402 3.33680 3.69022 3.82199 3.88760 3.97427 4.10414 4.14966 4.23817 4.31816 4.39165 4.45252 4.53217 4.63096 4.70782 4.72713 4.80160 4.80612 4.95745 5.00291 5.04189 5.14417 5.24771 5.30229 5.40143 5.50701 5.54507 5.77335 5.93596 6.05287 6.54340 6.64112 6.74547 7.25955 7.30403 7.39711 8.80013 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.026511 B = 0.003962 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.917365 B = 7066.154443 C = 7623.065756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.115 3.885 3 N -0.352 5.352 4 C 0.116 3.884 5 C -0.308 4.308 6 C 0.595 3.405 7 O -0.596 6.596 8 N -0.612 5.612 9 C 0.105 3.895 10 C -0.113 4.113 11 C 0.234 3.766 12 O -0.588 6.588 13 C -0.557 4.557 14 H 0.068 0.932 15 C 0.025 3.975 16 N -0.917 5.917 17 Si 0.963 3.037 18 H -0.265 1.265 19 H -0.285 1.285 20 H -0.277 1.277 21 C 0.121 3.879 22 C 0.111 3.889 23 C -0.078 4.078 24 N -0.313 5.313 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.134 0.866 30 H 0.215 0.785 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.378 0.622 36 H 0.271 0.729 37 H 0.031 0.969 38 H 0.028 0.972 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.968 -14.786 -7.767 19.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.003 4.003 3 N -0.131 5.131 4 C -0.036 4.036 5 C -0.323 4.323 6 C 0.386 3.614 7 O -0.478 6.478 8 N -0.343 5.343 9 C -0.017 4.017 10 C -0.150 4.150 11 C 0.194 3.806 12 O -0.397 6.397 13 C -0.595 4.595 14 H 0.086 0.914 15 C -0.176 4.176 16 N -0.557 5.557 17 Si 0.789 3.211 18 H -0.189 1.189 19 H -0.211 1.211 20 H -0.202 1.202 21 C -0.002 4.002 22 C -0.055 4.055 23 C -0.136 4.136 24 N -0.136 5.136 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.123 0.877 28 H 0.122 0.878 29 H 0.152 0.848 30 H 0.232 0.768 31 H 0.116 0.884 32 H 0.101 0.899 33 H 0.112 0.888 34 H 0.098 0.902 35 H 0.229 0.771 36 H 0.080 0.920 37 H 0.050 0.950 38 H 0.047 0.953 39 H 0.103 0.897 40 H 0.109 0.891 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.177 -15.372 -8.729 21.465 hybrid contribution 1.504 2.181 1.051 2.850 sum -10.673 -13.191 -7.678 18.624 Atomic orbital electron populations 1.22034 0.93358 1.04317 1.02219 1.22322 0.96552 0.74786 1.06679 1.48890 1.33638 1.11338 1.19185 1.23560 0.92309 0.92327 0.95395 1.20073 1.12002 0.95464 1.04792 1.17485 0.79499 0.87024 0.77427 1.90677 1.73663 1.20399 1.63110 1.48648 1.20253 1.10134 1.55302 1.22595 0.94909 0.81872 1.02283 1.22752 0.94649 0.98224 0.99411 1.19688 0.90145 0.90832 0.79940 1.86045 1.94724 1.40146 1.18744 1.21906 1.01933 1.10484 1.25169 0.91430 1.25815 1.00653 0.96897 0.94196 1.69686 1.36631 1.22457 1.26941 0.85420 0.79530 0.77928 0.78243 1.18864 1.21088 1.20229 1.22537 0.89235 0.93798 0.94652 1.22576 0.93130 0.95772 0.94063 1.20302 1.03892 0.89975 0.99467 1.77015 1.24803 0.96909 1.14873 0.93096 0.92946 0.87685 0.87833 0.84798 0.76845 0.88359 0.89942 0.88773 0.90181 0.77105 0.91982 0.95025 0.95328 0.89653 0.89113 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 10.09 71.98 0.73 -1.04 16 2 C 0.11 1.25 7.21 86.38 0.62 1.87 16 3 N -0.35 -7.51 3.65 -346.30 -1.26 -8.77 16 4 C 0.12 2.74 9.50 84.27 0.80 3.54 16 5 C -0.31 -10.16 5.67 -20.15 -0.11 -10.27 16 6 C 0.59 24.95 7.67 86.66 0.66 25.61 16 7 O -0.60 -29.80 15.81 -4.03 -0.06 -29.86 16 8 N -0.61 -25.27 3.33 -815.55 -2.71 -27.99 16 9 C 0.11 3.31 5.35 86.86 0.46 3.77 16 10 C -0.11 -4.16 6.22 31.99 0.20 -3.96 16 11 C 0.23 11.24 0.86 -10.33 -0.01 11.23 16 12 O -0.59 -29.36 13.09 -148.98 -1.95 -31.31 16 13 C -0.56 -29.08 8.11 25.60 0.21 -28.87 16 14 H 0.07 3.43 7.76 -2.91 -0.02 3.41 16 15 C 0.02 1.31 5.28 84.65 0.45 1.75 16 16 N -0.92 -49.98 10.98 21.45 0.24 -49.74 16 17 Si 0.96 42.05 29.54 68.60 2.03 44.08 16 18 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 19 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 20 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 21 C 0.12 6.07 5.54 86.75 0.48 6.55 16 22 C 0.11 3.49 7.26 43.51 0.32 3.81 16 23 C -0.08 -2.22 10.24 71.23 0.73 -1.49 16 24 N -0.31 -8.72 12.33 -46.68 -0.58 -9.30 16 25 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.13 0.57 8.06 -2.38 -0.02 0.55 16 30 H 0.22 3.52 6.46 -2.91 -0.02 3.50 16 31 H 0.10 2.42 6.58 -2.39 -0.02 2.40 16 32 H 0.08 2.30 7.71 -2.39 -0.02 2.28 16 33 H 0.09 3.14 8.14 -2.38 -0.02 3.12 16 34 H 0.08 2.88 8.02 -2.39 -0.02 2.86 16 35 H 0.38 20.06 6.99 -74.06 -0.52 19.55 16 36 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 37 H 0.03 1.75 7.81 -2.39 -0.02 1.73 16 38 H 0.03 1.60 8.07 -2.39 -0.02 1.58 16 39 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.07 2.40 6.61 -2.38 -0.02 2.38 16 Total: -1.00 -71.64 338.44 1.76 -69.88 By element: Atomic # 1 Polarization: 29.96 SS G_CDS: 0.53 Total: 30.49 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: 5.54 Total: 12.52 kcal Atomic # 7 Polarization: -91.48 SS G_CDS: -4.32 Total: -95.79 kcal Atomic # 8 Polarization: -59.16 SS G_CDS: -2.01 Total: -61.17 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -71.64 1.76 -69.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600064510.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.309 kcal (2) G-P(sol) polarization free energy of solvation -71.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds