Wall clock time and date at job start Tue Mar 31 2020 03:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00161 * 2 1 4 4 C 1.53000 * 109.47642 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47485 * 180.02562 * 4 3 2 6 6 C 1.34253 * 125.75358 * 125.00141 * 5 4 3 7 7 C 1.38049 * 107.41757 * 180.02562 * 6 5 4 8 8 C 1.47426 * 126.41761 * 179.97438 * 7 6 5 9 9 O 1.21610 * 119.99679 * 5.03400 * 8 7 6 10 10 N 1.34774 * 120.00150 * 185.03527 * 8 7 6 11 11 C 1.46504 * 119.99597 * 185.03240 * 10 8 7 12 12 C 1.53011 * 109.46684 * 184.99415 * 11 10 8 13 13 C 1.50694 * 115.54694 * 54.24240 * 12 11 10 14 14 H 1.08004 * 119.99852 * 215.58774 * 13 12 11 15 15 C 1.37875 * 120.00476 * 35.32159 * 13 12 11 16 16 N 1.31510 * 119.99871 * 355.77501 * 15 13 12 17 17 Si 1.86797 * 120.00177 * 175.77518 * 15 13 12 18 18 H 1.48502 * 109.47443 * 0.02562 * 17 15 13 19 19 H 1.48510 * 109.46943 * 119.99896 * 17 15 13 20 20 H 1.48499 * 109.47371 * 239.99609 * 17 15 13 21 21 C 1.52999 * 117.49604 * 199.91110 * 12 11 10 22 22 C 1.52992 * 117.49723 * 268.57402 * 12 11 10 23 23 C 1.41292 * 107.16948 * 0.23974 * 7 6 5 24 24 N 1.30450 * 108.01917 * 359.59370 * 23 7 6 25 25 H 1.09003 * 109.46578 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46993 * 299.99615 * 1 2 3 27 27 H 1.08998 * 109.47093 * 60.00136 * 1 2 3 28 28 H 1.09006 * 109.46791 * 59.99947 * 3 2 1 29 29 H 1.09001 * 109.46995 * 300.00388 * 3 2 1 30 30 H 1.09006 * 109.46807 * 60.00280 * 4 3 2 31 31 H 1.08995 * 109.47365 * 300.00823 * 4 3 2 32 32 H 1.07999 * 126.29579 * 359.97438 * 6 5 4 33 33 H 0.96993 * 120.00307 * 5.02548 * 10 8 7 34 34 H 1.09001 * 109.47665 * 64.99484 * 11 10 8 35 35 H 1.09000 * 109.47401 * 304.99083 * 11 10 8 36 36 H 0.97000 * 120.00108 * 185.00325 * 16 15 13 37 37 H 1.09001 * 117.49538 * 215.00153 * 21 12 11 38 38 H 1.09000 * 117.50341 * 0.02728 * 21 12 11 39 39 H 1.09007 * 117.50462 * 359.97438 * 22 12 11 40 40 H 1.09005 * 117.50103 * 144.97885 * 22 12 11 41 41 H 1.07999 * 125.98592 * 179.74048 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 4.1313 2.5230 0.0013 6 6 5.0209 2.9852 0.8942 7 6 5.3260 4.2839 0.5393 8 6 6.2607 5.1854 1.2373 9 8 6.9179 4.7732 2.1738 10 7 6.3868 6.4663 0.8375 11 6 7.3935 7.3314 1.4576 12 6 7.2453 8.7550 0.9168 13 6 5.8711 9.3597 1.0462 14 1 5.4948 10.0154 0.2748 15 6 5.0918 9.0715 2.1465 16 7 5.5129 8.2049 3.0416 17 14 3.4381 9.9119 2.3658 18 1 3.1975 10.8358 1.2283 19 1 2.3637 8.8874 2.4065 20 1 3.4378 10.6801 3.6367 21 6 8.4459 9.6928 1.0580 22 6 8.0697 9.1318 -0.3157 23 6 4.5701 4.5895 -0.6146 24 7 3.8688 3.5353 -0.9285 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8575 0.6437 -0.8892 31 1 3.8568 0.6439 0.8907 32 1 5.4232 2.4413 1.7361 33 1 5.8112 6.8153 0.1392 34 1 8.3895 6.9556 1.2235 35 1 7.2519 7.3368 2.5384 36 1 4.9349 7.9476 3.7769 37 1 8.2418 10.7472 1.2443 38 1 9.3415 9.2956 1.5357 39 1 8.7180 8.3657 -0.7412 40 1 7.6180 9.8168 -1.0333 41 1 4.5743 5.5302 -1.1452 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601546237.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:36 Heat of formation + Delta-G solvation = 3.776425 kcal Electronic energy + Delta-G solvation = -23123.081087 eV Core-core repulsion = 19619.237062 eV Total energy + Delta-G solvation = -3503.844024 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.34873 -39.99167 -38.98430 -38.28855 -35.03712 -34.50541 -34.03898 -31.44607 -30.37478 -27.89793 -27.40791 -26.83714 -24.48399 -23.50754 -22.88237 -21.66549 -21.02843 -20.67219 -19.03413 -18.13027 -17.47608 -17.29317 -16.71744 -16.53035 -16.49191 -16.24144 -15.86972 -15.47704 -15.36587 -15.02188 -14.61079 -14.31615 -14.04150 -13.78004 -13.49257 -13.30904 -13.03428 -12.91725 -12.71359 -12.50432 -12.35965 -12.25283 -12.00704 -11.97931 -11.46650 -10.88524 -10.79581 -10.68915 -10.58860 -10.57191 -10.10065 -9.82768 -9.38574 -7.88486 -6.15002 0.57168 1.20129 1.25370 1.41847 1.47768 1.56016 2.44021 2.62324 2.73239 2.79007 3.14428 3.55300 3.70942 3.82180 3.87897 3.92400 4.19758 4.24955 4.32947 4.36054 4.45023 4.48787 4.59793 4.62558 4.68642 4.78433 4.81192 4.84743 4.89495 5.01432 5.20265 5.36466 5.44127 5.58467 5.66458 5.80745 6.01254 6.01904 6.06764 6.42960 6.49746 6.85089 7.12402 7.50272 7.69426 8.96440 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.017749 B = 0.003743 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.192220 B = 7479.459953 C = 8348.262044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.057 3.943 4 C 0.131 3.869 5 N -0.358 5.358 6 C 0.133 3.867 7 C -0.305 4.305 8 C 0.581 3.419 9 O -0.610 6.610 10 N -0.674 5.674 11 C 0.177 3.823 12 C 0.008 3.992 13 C -0.503 4.503 14 H 0.059 0.941 15 C 0.037 3.963 16 N -0.887 5.887 17 Si 0.946 3.054 18 H -0.266 1.266 19 H -0.286 1.286 20 H -0.289 1.289 21 C -0.202 4.202 22 C -0.185 4.185 23 C 0.087 3.913 24 N -0.314 5.314 25 H 0.107 0.893 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.109 0.891 31 H 0.133 0.867 32 H 0.207 0.793 33 H 0.401 0.599 34 H 0.016 0.984 35 H 0.080 0.920 36 H 0.255 0.745 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.497 -14.269 -7.199 17.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.021 4.021 4 C 0.011 3.989 5 N -0.138 5.138 6 C -0.018 4.018 7 C -0.319 4.319 8 C 0.369 3.631 9 O -0.495 6.495 10 N -0.319 5.319 11 C 0.053 3.947 12 C 0.007 3.993 13 C -0.540 4.540 14 H 0.077 0.923 15 C -0.165 4.165 16 N -0.523 5.523 17 Si 0.773 3.227 18 H -0.190 1.190 19 H -0.212 1.212 20 H -0.216 1.216 21 C -0.241 4.241 22 C -0.222 4.222 23 C -0.101 4.101 24 N -0.134 5.134 25 H 0.125 0.875 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.127 0.873 31 H 0.151 0.849 32 H 0.224 0.776 33 H 0.236 0.764 34 H 0.034 0.966 35 H 0.097 0.903 36 H 0.065 0.935 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -7.882 -15.388 -7.195 18.727 hybrid contribution -0.582 1.503 0.739 1.773 sum -8.464 -13.885 -6.456 17.496 Atomic orbital electron populations 1.22974 0.78768 1.04335 1.00841 1.87743 1.21933 1.26755 1.95663 1.22542 0.92779 0.85309 1.01480 1.21736 0.92354 0.77397 1.07368 1.48468 1.32661 1.12541 1.20125 1.23211 0.90473 0.93837 0.94298 1.20374 1.10629 0.96877 1.04069 1.17560 0.81338 0.82097 0.82139 1.90650 1.50241 1.77428 1.31142 1.45280 1.37581 1.09458 1.39591 1.20721 0.86586 0.87522 0.99877 1.19280 0.91405 0.91733 0.96855 1.20719 0.99298 1.28856 1.05146 0.92325 1.25553 1.00584 0.95167 0.95169 1.70067 1.36265 1.32101 1.13914 0.85691 0.80547 0.78611 0.77841 1.18980 1.21233 1.21559 1.22970 1.00614 0.99488 1.00983 1.22946 1.04842 1.03597 0.90822 1.24362 0.92647 0.98310 0.94735 1.77065 1.24814 0.97189 1.14347 0.87496 0.93422 0.93307 0.93061 0.92403 0.87326 0.84926 0.77620 0.76392 0.96556 0.90254 0.93541 0.90522 0.90617 0.89640 0.89739 0.77797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.57 16 2 O -0.40 -6.95 10.70 -148.98 -1.59 -8.55 16 3 C 0.06 1.00 6.11 71.98 0.44 1.44 16 4 C 0.13 2.18 6.86 86.38 0.59 2.77 16 5 N -0.36 -8.70 3.65 -346.31 -1.26 -9.97 16 6 C 0.13 3.70 11.25 84.28 0.95 4.65 16 7 C -0.30 -10.46 6.12 -20.15 -0.12 -10.59 16 8 C 0.58 25.11 7.81 86.66 0.68 25.78 16 9 O -0.61 -30.58 16.88 -4.06 -0.07 -30.65 16 10 N -0.67 -29.31 5.01 -466.34 -2.34 -31.64 16 11 C 0.18 8.50 4.62 86.38 0.40 8.90 16 12 C 0.01 0.37 2.04 -52.93 -0.11 0.26 16 13 C -0.50 -25.18 8.43 25.60 0.22 -24.96 16 14 H 0.06 2.91 7.82 -2.91 -0.02 2.89 16 15 C 0.04 1.90 5.31 84.65 0.45 2.35 16 16 N -0.89 -48.36 10.11 21.45 0.22 -48.14 16 17 Si 0.95 41.54 29.54 68.60 2.03 43.56 16 18 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 19 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 20 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 21 C -0.20 -8.59 9.96 30.62 0.30 -8.28 16 22 C -0.18 -7.25 9.92 30.62 0.30 -6.95 16 23 C 0.09 2.61 11.50 85.65 0.99 3.60 16 24 N -0.31 -8.94 12.33 -56.27 -0.69 -9.63 16 25 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.11 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.13 1.55 8.06 -2.39 -0.02 1.53 16 32 H 0.21 4.73 8.06 -2.91 -0.02 4.70 16 33 H 0.40 16.20 7.12 -92.71 -0.66 15.54 16 34 H 0.02 0.77 8.09 -2.39 -0.02 0.75 16 35 H 0.08 4.47 5.89 -2.39 -0.01 4.45 16 36 H 0.25 13.77 8.32 -92.71 -0.77 13.00 16 37 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 38 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 39 H 0.09 3.06 8.14 -2.38 -0.02 3.05 16 40 H 0.08 3.16 8.14 -2.38 -0.02 3.14 16 41 H 0.21 5.27 7.55 -2.91 -0.02 5.24 16 Total: -1.00 -65.89 352.82 2.99 -62.90 By element: Atomic # 1 Polarization: 31.19 SS G_CDS: 0.37 Total: 31.56 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: 6.33 Total: 0.55 kcal Atomic # 7 Polarization: -95.31 SS G_CDS: -4.08 Total: -99.38 kcal Atomic # 8 Polarization: -37.53 SS G_CDS: -1.66 Total: -39.19 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.56 kcal Total: -65.89 2.99 -62.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601546237.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.675 kcal (2) G-P(sol) polarization free energy of solvation -65.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds