Wall clock time and date at job start Tue Mar 31 2020 03:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 114.00492 * 2 1 4 4 C 1.52993 * 109.47231 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47222 * 65.00722 * 4 3 2 6 6 C 1.36753 * 119.99569 * 269.99664 * 5 4 3 7 7 H 1.07995 * 120.00188 * 136.93728 * 6 5 4 8 8 C 1.39105 * 119.99923 * 316.93143 * 6 5 4 9 9 N 1.31333 * 119.99370 * 168.20446 * 8 6 5 10 10 Si 1.86798 * 120.00179 * 348.20777 * 8 6 5 11 11 H 1.48501 * 109.47302 * 95.15789 * 10 8 6 12 12 H 1.48503 * 109.46740 * 215.15597 * 10 8 6 13 13 H 1.48502 * 109.47225 * 335.15343 * 10 8 6 14 14 C 1.34774 * 120.00078 * 89.99736 * 5 4 3 15 15 O 1.21664 * 120.00458 * 4.44130 * 14 5 4 16 16 C 1.47216 * 119.99601 * 184.44140 * 14 5 4 17 17 N 1.31964 * 125.94007 * 355.94006 * 16 14 5 18 18 C 1.33376 * 109.28641 * 179.97438 * 17 16 14 19 19 C 1.34856 * 108.19507 * 359.97438 * 18 17 16 20 20 N 1.36106 * 125.93237 * 175.97634 * 16 14 5 21 21 C 1.46427 * 128.39366 * 0.12951 * 20 16 14 22 22 C 1.53293 * 108.72007 * 162.73720 * 21 20 16 23 23 C 1.53133 * 109.64356 * 50.58739 * 22 21 20 24 24 C 1.50753 * 128.46001 * 180.11934 * 19 18 17 25 25 H 1.08998 * 109.46547 * 299.99449 * 1 2 3 26 26 H 1.09003 * 109.47005 * 59.98990 * 1 2 3 27 27 H 1.08990 * 109.47114 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46519 * 60.00437 * 3 2 1 29 29 H 1.08996 * 109.47180 * 300.00965 * 3 2 1 30 30 H 1.08997 * 109.47346 * 305.00017 * 4 3 2 31 31 H 1.09010 * 109.46997 * 185.00502 * 4 3 2 32 32 H 0.97006 * 119.99151 * 180.02562 * 9 8 6 33 33 H 1.08000 * 125.90739 * 180.24744 * 18 17 16 34 34 H 1.08998 * 109.59404 * 42.96766 * 21 20 16 35 35 H 1.09000 * 109.72160 * 282.58190 * 21 20 16 36 36 H 1.08996 * 109.44088 * 290.52812 * 22 21 20 37 37 H 1.09005 * 109.43504 * 170.63548 * 22 21 20 38 38 H 1.09003 * 109.49730 * 170.40389 * 23 22 21 39 39 H 1.09001 * 109.50599 * 50.28830 * 23 22 21 40 40 H 1.09000 * 109.73582 * 283.85739 * 24 19 18 41 41 H 1.08997 * 109.74178 * 44.56559 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.0966 -0.7951 -1.3369 7 1 3.7391 -1.3159 -2.2129 8 6 4.6800 -1.5073 -0.2941 9 7 4.5909 -2.8173 -0.2631 10 14 5.5902 -0.6006 1.0619 11 1 4.6726 -0.3722 2.2070 12 1 6.7485 -1.4145 1.5105 13 1 6.0731 0.7056 0.5463 14 6 4.2615 1.3339 -2.3218 15 8 4.2323 2.5462 -2.2240 16 6 4.6091 0.7072 -3.6078 17 7 4.7493 -0.5866 -3.8261 18 6 5.0657 -0.7856 -5.1064 19 6 5.1272 0.4154 -5.7165 20 7 4.8424 1.3619 -4.7780 21 6 4.8087 2.8028 -5.0364 22 6 5.5443 3.0842 -6.3515 23 6 5.0074 2.1614 -7.4493 24 6 5.4447 0.7194 -7.1586 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6888 1.8463 0.8901 29 1 1.6886 1.8464 -0.8899 30 1 3.8515 0.5681 0.8409 31 1 3.9786 2.1765 0.0890 32 1 4.9974 -3.3139 0.4643 33 1 5.2381 -1.7434 -5.5748 34 1 5.3021 3.3320 -4.2211 35 1 3.7746 3.1380 -5.1170 36 1 6.6109 2.9048 -6.2162 37 1 5.3854 4.1230 -6.6409 38 1 5.4049 2.4748 -8.4147 39 1 3.9188 2.2141 -7.4689 40 1 6.5167 0.6192 -7.3285 41 1 4.9025 0.0319 -7.8077 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601619740.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:36 Heat of formation + Delta-G solvation = 5.534454 kcal Electronic energy + Delta-G solvation = -24743.099838 eV Core-core repulsion = 21239.332048 eV Total energy + Delta-G solvation = -3503.767791 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.72904 -38.72259 -37.00250 -36.36969 -34.84943 -32.46862 -31.79363 -30.41912 -29.43183 -27.46637 -25.82878 -24.77275 -24.13584 -22.99872 -21.74109 -21.29424 -19.21738 -18.57610 -17.57061 -16.31763 -15.89809 -15.60724 -15.46734 -15.25549 -14.63226 -14.47492 -14.23769 -13.93012 -13.90694 -13.67156 -13.34646 -13.27554 -12.88847 -12.50864 -12.36003 -11.88396 -11.68670 -11.56734 -11.34965 -11.07902 -11.00047 -10.90494 -10.84115 -10.73041 -10.10295 -9.80267 -9.27400 -9.07943 -8.94176 -8.93416 -8.54860 -7.78500 -7.52230 -6.14796 -3.76225 2.17733 3.13051 3.17196 3.30702 3.35396 3.46108 4.26096 4.33392 4.39156 4.49431 4.60833 4.71081 4.78329 5.01213 5.17676 5.37818 5.46630 5.54186 5.59882 5.62428 5.65639 5.70069 5.77634 5.80129 5.82680 5.84126 5.91536 5.92795 6.04021 6.08646 6.13576 6.22647 6.25703 6.40331 6.95262 7.32278 7.44568 7.68375 7.80790 8.22356 8.65944 8.80261 9.18212 9.50417 9.70090 10.94664 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.017392 B = 0.005779 C = 0.005255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.572370 B = 4844.243516 C = 5327.378895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.356 6.356 3 C 0.056 3.944 4 C 0.101 3.899 5 N -0.423 5.423 6 C -0.300 4.300 7 H 0.139 0.861 8 C 0.071 3.929 9 N -0.859 5.859 10 Si 0.868 3.132 11 H -0.275 1.275 12 H -0.289 1.289 13 H -0.266 1.266 14 C 0.544 3.456 15 O -0.612 6.612 16 C 0.186 3.814 17 N -0.401 5.401 18 C -0.034 4.034 19 C -0.033 4.033 20 N -0.428 5.428 21 C 0.110 3.890 22 C -0.134 4.134 23 C -0.124 4.124 24 C -0.040 4.040 25 H 0.030 0.970 26 H 0.032 0.968 27 H 0.082 0.918 28 H 0.046 0.954 29 H 0.048 0.952 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.270 0.730 33 H 0.165 0.835 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.681 8.987 -9.278 13.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.274 6.274 3 C -0.022 4.022 4 C -0.022 4.022 5 N -0.140 5.140 6 C -0.429 4.429 7 H 0.156 0.844 8 C -0.135 4.135 9 N -0.496 5.496 10 Si 0.697 3.303 11 H -0.202 1.202 12 H -0.217 1.217 13 H -0.191 1.191 14 C 0.333 3.667 15 O -0.500 6.500 16 C -0.073 4.073 17 N -0.121 5.121 18 C -0.186 4.186 19 C -0.150 4.150 20 N -0.111 5.111 21 C -0.012 4.012 22 C -0.172 4.172 23 C -0.162 4.162 24 C -0.079 4.079 25 H 0.048 0.952 26 H 0.051 0.949 27 H 0.100 0.900 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.081 0.919 33 H 0.183 0.817 34 H 0.119 0.881 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.669 8.797 -8.456 12.316 hybrid contribution 0.371 1.051 0.290 1.152 sum -1.299 9.848 -8.167 12.859 Atomic orbital electron populations 1.22662 0.82937 1.02212 0.98676 1.88237 1.17759 1.26391 1.94994 1.22843 0.94555 0.85423 0.99360 1.21829 0.92447 0.99158 0.88777 1.43379 1.54455 1.07808 1.08317 1.19730 1.37486 0.78155 1.07532 0.84424 1.25305 0.95876 0.95112 0.97210 1.69624 1.42048 1.05874 1.32067 0.87092 0.79977 0.80596 0.82657 1.20219 1.21664 1.19069 1.16600 0.81990 0.85151 0.82962 1.90626 1.60677 1.13447 1.85210 1.22588 1.09065 0.87487 0.88187 1.71259 1.13877 1.12602 1.14340 1.22172 1.08186 0.96545 0.91735 1.21193 1.11265 0.89935 0.92656 1.45146 1.50600 1.07099 1.08299 1.21928 1.02162 0.78528 0.98613 1.21926 1.00735 1.00483 0.94059 1.21655 1.01389 0.94778 0.98399 1.20157 1.01552 0.96601 0.89557 0.95166 0.94945 0.89968 0.93590 0.93398 0.90654 0.89316 0.91926 0.81737 0.88136 0.90248 0.90986 0.89924 0.90955 0.91512 0.90411 0.89776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.64 16 2 O -0.36 -7.75 10.18 -35.23 -0.36 -8.11 16 3 C 0.06 1.12 6.28 37.15 0.23 1.35 16 4 C 0.10 2.29 4.46 -4.05 -0.02 2.27 16 5 N -0.42 -10.83 2.11 -116.12 -0.24 -11.07 16 6 C -0.30 -8.42 7.92 -15.04 -0.12 -8.54 16 7 H 0.14 4.21 6.08 -52.49 -0.32 3.89 16 8 C 0.07 2.01 5.43 -17.44 -0.09 1.91 16 9 N -0.86 -25.28 13.95 55.50 0.77 -24.51 16 10 Si 0.87 21.58 24.69 -169.99 -4.20 17.38 16 11 H -0.27 -6.52 6.84 56.52 0.39 -6.13 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 H -0.27 -6.62 6.93 56.52 0.39 -6.23 16 14 C 0.54 13.60 7.62 -12.61 -0.10 13.50 16 15 O -0.61 -15.08 14.79 5.22 0.08 -15.00 16 16 C 0.19 4.38 7.57 -154.83 -1.17 3.20 16 17 N -0.40 -9.72 7.95 -11.48 -0.09 -9.81 16 18 C -0.03 -0.66 11.82 -18.08 -0.21 -0.87 16 19 C -0.03 -0.56 6.58 -81.78 -0.54 -1.10 16 20 N -0.43 -8.19 3.16 -109.96 -0.35 -8.54 16 21 C 0.11 1.69 6.15 -3.93 -0.02 1.66 16 22 C -0.13 -1.48 5.92 -26.51 -0.16 -1.63 16 23 C -0.12 -1.25 5.96 -26.42 -0.16 -1.41 16 24 C -0.04 -0.47 6.31 -27.62 -0.17 -0.64 16 25 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.08 1.78 3.21 -51.93 -0.17 1.61 16 31 H 0.09 1.89 7.36 -51.92 -0.38 1.51 16 32 H 0.27 7.44 8.31 -40.82 -0.34 7.11 16 33 H 0.17 2.73 8.06 -52.49 -0.42 2.31 16 34 H 0.10 1.67 7.21 -51.93 -0.37 1.30 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 40 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 328.63 15.07 4.95 4.95 Total: -1.00 -33.62 328.63 -6.75 -40.37 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -5.90 Total: 2.99 kcal Atomic # 6 Polarization: 12.77 SS G_CDS: -1.42 Total: 11.35 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: 0.09 Total: -53.93 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.28 Total: -23.10 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.20 Total: 17.38 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.62 -6.75 -40.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601619740.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.908 kcal (2) G-P(sol) polarization free energy of solvation -33.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds