Wall clock time and date at job start Tue Mar 31 2020 03:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 114.00492 * 2 1 4 4 C 1.52993 * 109.47231 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47222 * 65.00722 * 4 3 2 6 6 C 1.36753 * 119.99569 * 269.99664 * 5 4 3 7 7 H 1.07995 * 120.00188 * 136.93728 * 6 5 4 8 8 C 1.39105 * 119.99923 * 316.93143 * 6 5 4 9 9 N 1.31333 * 119.99370 * 168.20446 * 8 6 5 10 10 Si 1.86798 * 120.00179 * 348.20777 * 8 6 5 11 11 H 1.48501 * 109.47302 * 95.15789 * 10 8 6 12 12 H 1.48503 * 109.46740 * 215.15597 * 10 8 6 13 13 H 1.48502 * 109.47225 * 335.15343 * 10 8 6 14 14 C 1.34774 * 120.00078 * 89.99736 * 5 4 3 15 15 O 1.21664 * 120.00458 * 4.44130 * 14 5 4 16 16 C 1.47216 * 119.99601 * 184.44140 * 14 5 4 17 17 N 1.31964 * 125.94007 * 355.94006 * 16 14 5 18 18 C 1.33376 * 109.28641 * 179.97438 * 17 16 14 19 19 C 1.34856 * 108.19507 * 359.97438 * 18 17 16 20 20 N 1.36106 * 125.93237 * 175.97634 * 16 14 5 21 21 C 1.46427 * 128.39366 * 0.12951 * 20 16 14 22 22 C 1.53293 * 108.72007 * 162.73720 * 21 20 16 23 23 C 1.53133 * 109.64356 * 50.58739 * 22 21 20 24 24 C 1.50753 * 128.46001 * 180.11934 * 19 18 17 25 25 H 1.08998 * 109.46547 * 299.99449 * 1 2 3 26 26 H 1.09003 * 109.47005 * 59.98990 * 1 2 3 27 27 H 1.08990 * 109.47114 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46519 * 60.00437 * 3 2 1 29 29 H 1.08996 * 109.47180 * 300.00965 * 3 2 1 30 30 H 1.08997 * 109.47346 * 305.00017 * 4 3 2 31 31 H 1.09010 * 109.46997 * 185.00502 * 4 3 2 32 32 H 0.97006 * 119.99151 * 180.02562 * 9 8 6 33 33 H 1.08000 * 125.90739 * 180.24744 * 18 17 16 34 34 H 1.08998 * 109.59404 * 42.96766 * 21 20 16 35 35 H 1.09000 * 109.72160 * 282.58190 * 21 20 16 36 36 H 1.08996 * 109.44088 * 290.52812 * 22 21 20 37 37 H 1.09005 * 109.43504 * 170.63548 * 22 21 20 38 38 H 1.09003 * 109.49730 * 170.40389 * 23 22 21 39 39 H 1.09001 * 109.50599 * 50.28830 * 23 22 21 40 40 H 1.09000 * 109.73582 * 283.85739 * 24 19 18 41 41 H 1.08997 * 109.74178 * 44.56559 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.0966 -0.7951 -1.3369 7 1 3.7391 -1.3159 -2.2129 8 6 4.6800 -1.5073 -0.2941 9 7 4.5909 -2.8173 -0.2631 10 14 5.5902 -0.6006 1.0619 11 1 4.6726 -0.3722 2.2070 12 1 6.7485 -1.4145 1.5105 13 1 6.0731 0.7056 0.5463 14 6 4.2615 1.3339 -2.3218 15 8 4.2323 2.5462 -2.2240 16 6 4.6091 0.7072 -3.6078 17 7 4.7493 -0.5866 -3.8261 18 6 5.0657 -0.7856 -5.1064 19 6 5.1272 0.4154 -5.7165 20 7 4.8424 1.3619 -4.7780 21 6 4.8087 2.8028 -5.0364 22 6 5.5443 3.0842 -6.3515 23 6 5.0074 2.1614 -7.4493 24 6 5.4447 0.7194 -7.1586 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6888 1.8463 0.8901 29 1 1.6886 1.8464 -0.8899 30 1 3.8515 0.5681 0.8409 31 1 3.9786 2.1765 0.0890 32 1 4.9974 -3.3139 0.4643 33 1 5.2381 -1.7434 -5.5748 34 1 5.3021 3.3320 -4.2211 35 1 3.7746 3.1380 -5.1170 36 1 6.6109 2.9048 -6.2162 37 1 5.3854 4.1230 -6.6409 38 1 5.4049 2.4748 -8.4147 39 1 3.9188 2.2141 -7.4689 40 1 6.5167 0.6192 -7.3285 41 1 4.9025 0.0319 -7.8077 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601619740.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:35 Heat of formation + Delta-G solvation = -17.322873 kcal Electronic energy + Delta-G solvation = -24744.091007 eV Core-core repulsion = 21239.332048 eV Total energy + Delta-G solvation = -3504.758959 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.25477 -40.57331 -38.60543 -37.57517 -36.72077 -33.92523 -33.69932 -31.91365 -30.94721 -28.89314 -27.26923 -26.73089 -25.39099 -24.51718 -23.26313 -22.68461 -20.93386 -19.97814 -19.30676 -18.08563 -17.61040 -17.15756 -16.95832 -16.93771 -16.27233 -16.11376 -15.58059 -15.45932 -15.05730 -14.90792 -14.77464 -14.67455 -14.45095 -14.32584 -13.99677 -13.62520 -13.27559 -13.10520 -12.87882 -12.61666 -12.40388 -12.03532 -11.97554 -11.85703 -11.82841 -11.69062 -11.16984 -10.81059 -10.55636 -10.49721 -10.41849 -9.66521 -9.14936 -8.27016 -5.92100 0.53910 1.19801 1.30834 1.37579 1.65072 1.78819 2.25666 2.61794 2.63059 2.93521 3.17640 3.60182 3.73411 3.78589 3.83878 3.95886 4.03112 4.10006 4.32703 4.34159 4.36903 4.44014 4.50310 4.53575 4.56549 4.60394 4.70633 4.74544 4.83530 4.87957 4.93123 5.01592 5.13563 5.31719 5.48626 5.51347 5.82891 6.13400 6.22140 6.37618 6.59173 6.94141 7.24581 7.46304 7.67773 8.86143 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.017392 B = 0.005779 C = 0.005255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.572370 B = 4844.243516 C = 5327.378895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.399 6.399 3 C 0.062 3.938 4 C 0.092 3.908 5 N -0.439 5.439 6 C -0.290 4.290 7 H 0.103 0.897 8 C 0.025 3.975 9 N -0.906 5.906 10 Si 0.923 3.077 11 H -0.255 1.255 12 H -0.290 1.290 13 H -0.270 1.270 14 C 0.546 3.454 15 O -0.614 6.614 16 C 0.130 3.870 17 N -0.442 5.442 18 C -0.069 4.069 19 C 0.004 3.996 20 N -0.423 5.423 21 C 0.100 3.900 22 C -0.126 4.126 23 C -0.120 4.120 24 C -0.042 4.042 25 H 0.060 0.940 26 H 0.040 0.960 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.043 0.957 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.272 0.728 33 H 0.186 0.814 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.115 0.885 38 H 0.111 0.889 39 H 0.063 0.937 40 H 0.101 0.899 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.477 11.234 -11.217 15.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.318 6.318 3 C -0.016 4.016 4 C -0.030 4.030 5 N -0.157 5.157 6 C -0.419 4.419 7 H 0.120 0.880 8 C -0.177 4.177 9 N -0.545 5.545 10 Si 0.750 3.250 11 H -0.180 1.180 12 H -0.217 1.217 13 H -0.195 1.195 14 C 0.335 3.665 15 O -0.502 6.502 16 C -0.127 4.127 17 N -0.163 5.163 18 C -0.221 4.221 19 C -0.116 4.116 20 N -0.106 5.106 21 C -0.021 4.021 22 C -0.163 4.163 23 C -0.158 4.158 24 C -0.080 4.080 25 H 0.078 0.922 26 H 0.058 0.942 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.118 0.882 32 H 0.082 0.918 33 H 0.203 0.797 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.133 0.867 38 H 0.129 0.871 39 H 0.082 0.918 40 H 0.119 0.881 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.491 11.088 -10.374 15.258 hybrid contribution 0.273 0.437 0.643 0.824 sum -1.217 11.526 -9.731 15.133 Atomic orbital electron populations 1.22863 0.80373 1.03160 1.00477 1.88168 1.20742 1.27566 1.95359 1.22806 0.92591 0.85217 1.00971 1.21999 0.94740 0.99053 0.87192 1.43430 1.55750 1.07019 1.09508 1.19308 1.37040 0.79219 1.06329 0.87953 1.25845 0.96710 0.95661 0.99466 1.69724 1.44154 1.07197 1.33453 0.86214 0.79006 0.78998 0.80815 1.18050 1.21725 1.19503 1.16910 0.80801 0.85254 0.83494 1.90589 1.60603 1.13370 1.85598 1.22293 1.13123 0.88028 0.89283 1.71074 1.14293 1.13732 1.17173 1.22671 1.09835 0.98829 0.90769 1.22110 1.06401 0.88483 0.94633 1.45434 1.48979 1.08843 1.07332 1.22246 1.02985 0.76145 1.00757 1.21967 0.99985 1.02745 0.91609 1.21695 1.01364 0.93054 0.99662 1.20503 1.03400 0.98578 0.85471 0.92174 0.94165 0.89592 0.89557 0.93895 0.91563 0.88242 0.91814 0.79663 0.90016 0.89955 0.90887 0.86709 0.87055 0.91836 0.88103 0.87316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 11.01 113.37 1.25 2.12 16 2 O -0.40 -17.46 10.18 -148.98 -1.52 -18.97 16 3 C 0.06 2.42 6.28 71.98 0.45 2.87 16 4 C 0.09 4.20 4.46 86.38 0.39 4.59 16 5 N -0.44 -23.17 2.11 -639.53 -1.35 -24.51 16 6 C -0.29 -17.02 7.92 84.13 0.67 -16.36 16 7 H 0.10 6.70 6.08 -2.91 -0.02 6.68 16 8 C 0.02 1.45 5.43 84.98 0.46 1.91 16 9 N -0.91 -55.70 13.95 21.69 0.30 -55.40 16 10 Si 0.92 45.66 24.69 68.60 1.69 47.35 16 11 H -0.25 -11.63 6.84 99.48 0.68 -10.95 16 12 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 13 H -0.27 -13.35 6.93 99.48 0.69 -12.66 16 14 C 0.55 28.11 7.62 86.60 0.66 28.77 16 15 O -0.61 -30.66 14.79 -4.23 -0.06 -30.72 16 16 C 0.13 6.33 7.57 136.30 1.03 7.37 16 17 N -0.44 -22.36 7.95 -190.23 -1.51 -23.87 16 18 C -0.07 -2.71 11.82 83.68 0.99 -1.72 16 19 C 0.00 0.12 6.58 41.10 0.27 0.39 16 20 N -0.42 -16.01 3.16 -501.80 -1.58 -17.59 16 21 C 0.10 2.92 6.15 86.49 0.53 3.46 16 22 C -0.13 -2.27 5.92 30.74 0.18 -2.08 16 23 C -0.12 -1.81 5.96 30.79 0.18 -1.63 16 24 C -0.04 -0.79 6.31 30.02 0.19 -0.60 16 25 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 28 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 29 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.07 3.12 3.21 -2.39 -0.01 3.11 16 31 H 0.10 4.21 7.36 -2.38 -0.02 4.19 16 32 H 0.27 15.62 8.31 -92.70 -0.77 14.85 16 33 H 0.19 6.16 8.06 -2.91 -0.02 6.13 16 34 H 0.08 2.70 7.21 -2.39 -0.02 2.68 16 35 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.07 1.35 8.12 -2.39 -0.02 1.33 16 37 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 38 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.06 1.05 8.12 -2.39 -0.02 1.03 16 40 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -78.54 328.63 4.22 -74.32 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 0.99 Total: 20.32 kcal Atomic # 6 Polarization: 21.82 SS G_CDS: 7.25 Total: 29.08 kcal Atomic # 7 Polarization: -117.23 SS G_CDS: -4.14 Total: -121.37 kcal Atomic # 8 Polarization: -48.12 SS G_CDS: -1.58 Total: -49.69 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.69 Total: 47.35 kcal Total: -78.54 4.22 -74.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601619740.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.998 kcal (2) G-P(sol) polarization free energy of solvation -78.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds