Wall clock time and date at job start Tue Mar 31 2020 02:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46493 * 109.47205 * 2 1 4 4 N 1.39938 * 125.75525 * 89.97418 * 3 2 1 5 5 C 1.30445 * 108.90209 * 180.02562 * 4 3 2 6 6 C 1.41293 * 108.01930 * 359.97438 * 5 4 3 7 7 C 1.47432 * 126.41177 * 179.73556 * 6 5 4 8 8 O 1.21603 * 119.99746 * 146.09833 * 7 6 5 9 9 N 1.34766 * 120.00374 * 326.10219 * 7 6 5 10 10 C 1.47430 * 125.64979 * 4.33541 * 9 7 6 11 11 C 1.54906 * 104.83620 * 204.09396 * 10 9 7 12 12 C 1.55155 * 101.58042 * 322.99261 * 11 10 9 13 13 O 1.42903 * 110.71887 * 277.13561 * 12 11 10 14 14 C 1.50706 * 110.72142 * 154.04132 * 12 11 10 15 15 H 1.07996 * 119.99546 * 0.02562 * 14 12 11 16 16 C 1.37875 * 120.00109 * 179.97438 * 14 12 11 17 17 N 1.31517 * 119.99719 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 119.99739 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47128 * 90.00644 * 18 16 14 20 20 H 1.48501 * 109.46986 * 210.00026 * 18 16 14 21 21 H 1.48496 * 109.47563 * 330.00121 * 18 16 14 22 22 C 1.47024 * 125.65060 * 184.03215 * 9 7 6 23 23 C 1.34265 * 125.75606 * 270.01708 * 3 2 1 24 24 C 1.50690 * 126.29056 * 359.94271 * 23 3 2 25 25 H 1.09003 * 109.46784 * 60.00021 * 1 2 3 26 26 H 1.09001 * 109.47096 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47596 * 300.00094 * 1 2 3 28 28 H 1.08999 * 109.47083 * 240.00029 * 2 1 3 29 29 H 1.08997 * 109.47114 * 120.00266 * 2 1 3 30 30 H 1.07995 * 125.99450 * 179.97438 * 5 4 3 31 31 H 1.09005 * 110.36585 * 322.93675 * 10 9 7 32 32 H 1.09000 * 110.36521 * 85.14241 * 10 9 7 33 33 H 1.08996 * 111.00050 * 81.06206 * 11 10 9 34 34 H 1.08996 * 111.00628 * 204.91655 * 11 10 9 35 35 H 0.96704 * 113.99913 * 180.02562 * 13 12 11 36 36 H 0.97001 * 119.99536 * 179.97438 * 17 16 14 37 37 H 1.08997 * 109.88023 * 298.39218 * 22 9 7 38 38 H 1.08996 * 109.88369 * 59.56103 * 22 9 7 39 39 H 1.09004 * 109.47317 * 270.02799 * 24 23 3 40 40 H 1.09009 * 109.47315 * 30.02424 * 24 23 3 41 41 H 1.08998 * 109.47642 * 150.02416 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 7 2.2904 2.1522 1.1356 5 6 2.7062 3.3294 0.7574 6 6 2.7166 3.3562 -0.6552 7 6 3.1127 4.4932 -1.5060 8 8 3.6657 4.2925 -2.5703 9 7 2.8622 5.7550 -1.1043 10 6 2.2841 6.1443 0.1949 11 6 1.6388 7.5298 -0.0573 12 6 2.6541 8.1722 -1.0390 13 8 3.7527 8.7451 -0.3269 14 6 1.9803 9.2094 -1.8999 15 1 0.9263 9.4108 -1.7775 16 6 2.7095 9.9020 -2.8431 17 7 3.9931 9.6570 -2.9917 18 14 1.8743 11.1881 -3.9097 19 1 1.9509 12.5117 -3.2406 20 1 2.5576 11.2589 -5.2263 21 1 0.4507 10.8165 -4.1102 22 6 3.1258 6.9717 -1.8864 23 6 2.2795 2.1209 -1.0896 24 6 2.1254 1.6827 -2.5231 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 2.9923 4.1412 1.4097 31 1 1.5269 5.4238 0.5044 32 1 3.0659 6.2200 0.9506 33 1 0.6585 7.4253 -0.5221 34 1 1.5721 8.1038 0.8669 35 1 4.4161 9.1602 -0.8950 36 1 4.5060 10.1440 -3.6556 37 1 4.1930 7.0566 -2.0913 38 1 2.5680 6.9389 -2.8222 39 1 3.0573 1.2348 -2.8683 40 1 1.3217 0.9498 -2.5947 41 1 1.8858 2.5464 -3.1434 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601651827.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:48 Heat of formation + Delta-G solvation = -11.425546 kcal Electronic energy + Delta-G solvation = -24094.811826 eV Core-core repulsion = 20590.308595 eV Total energy + Delta-G solvation = -3504.503231 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -41.40002 -38.98738 -37.00524 -34.81902 -34.16961 -32.15291 -32.12962 -30.32173 -29.53873 -27.89318 -27.18341 -25.15075 -23.91081 -23.08619 -21.32109 -20.20180 -19.41940 -18.50400 -17.20579 -16.94248 -16.00138 -15.65158 -15.24878 -14.85833 -14.72622 -14.47504 -14.14764 -13.90148 -13.31011 -13.18449 -12.96139 -12.82827 -12.69416 -12.61035 -12.38271 -12.09494 -11.91466 -11.67567 -11.55807 -11.38437 -11.04238 -10.80613 -10.71396 -10.59410 -10.46991 -10.13393 -9.40168 -9.31465 -9.26315 -8.64112 -8.47294 -8.27140 -7.76051 -6.26919 -4.35435 1.66642 2.31233 2.42001 3.22274 3.29914 3.32568 3.62524 3.88095 4.28142 4.32132 4.55436 4.65389 4.83562 4.90799 4.96750 5.00645 5.22337 5.33113 5.41871 5.48073 5.49257 5.62816 5.69701 5.80138 5.86086 5.90490 6.00365 6.08974 6.27283 6.53494 6.55580 6.81680 6.88753 6.90188 7.07389 7.31321 7.42960 7.63090 7.76227 8.03294 8.33185 8.67383 8.88535 9.33628 9.47227 10.80804 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.027708 B = 0.003854 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.277964 B = 7263.818314 C = 7528.256051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.126 3.874 3 N -0.364 5.364 4 N -0.303 5.303 5 C 0.082 3.918 6 C -0.278 4.278 7 C 0.597 3.403 8 O -0.556 6.556 9 N -0.605 5.605 10 C 0.101 3.899 11 C -0.118 4.118 12 C 0.248 3.752 13 O -0.587 6.587 14 C -0.537 4.537 15 H 0.066 0.934 16 C 0.070 3.930 17 N -0.895 5.895 18 Si 0.904 3.096 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.273 1.273 22 C 0.105 3.895 23 C 0.142 3.858 24 C -0.091 4.091 25 H 0.062 0.938 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.190 0.810 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.386 0.614 36 H 0.271 0.729 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.614 -16.567 4.930 18.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.005 3.995 3 N -0.145 5.145 4 N -0.123 5.123 5 C -0.105 4.105 6 C -0.292 4.292 7 C 0.386 3.614 8 O -0.436 6.436 9 N -0.337 5.337 10 C -0.022 4.022 11 C -0.156 4.156 12 C 0.208 3.792 13 O -0.397 6.397 14 C -0.575 4.575 15 H 0.085 0.915 16 C -0.133 4.133 17 N -0.535 5.535 18 Si 0.731 3.269 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.017 4.017 23 C 0.011 3.989 24 C -0.150 4.150 25 H 0.081 0.919 26 H 0.096 0.904 27 H 0.086 0.914 28 H 0.112 0.888 29 H 0.115 0.885 30 H 0.207 0.793 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.238 0.762 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.105 0.895 40 H 0.087 0.913 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.792 -17.804 5.757 19.587 hybrid contribution 0.161 1.439 -1.674 2.213 sum -5.631 -16.365 4.084 17.782 Atomic orbital electron populations 1.22200 0.94126 1.03085 1.03512 1.21702 0.95371 0.77859 1.04541 1.48455 1.50675 1.12056 1.03357 1.77118 1.23079 1.04565 1.07490 1.24169 0.96898 0.95394 0.94030 1.20121 1.19335 0.95996 0.93781 1.16871 0.78748 0.80967 0.84831 1.90726 1.43700 1.84838 1.24329 1.48551 1.61177 1.05718 1.18246 1.22421 0.96807 0.97076 0.85936 1.22759 0.98655 0.93579 1.00645 1.19489 0.83929 0.88646 0.87154 1.86071 1.36627 1.77384 1.39597 1.21537 0.96408 1.20855 1.18730 0.91531 1.25074 0.94982 0.96743 0.96473 1.69582 1.06652 1.41775 1.35475 0.86398 0.79609 0.81390 0.79483 1.20393 1.21002 1.19728 1.22999 1.01091 0.82378 0.95241 1.21367 0.96107 0.90546 0.90929 1.20528 1.02778 1.03126 0.88537 0.91859 0.90435 0.91431 0.88831 0.88498 0.79317 0.91791 0.91773 0.90625 0.90532 0.76209 0.91922 0.91752 0.91715 0.89457 0.91317 0.88702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.17 10.24 37.16 0.38 -0.79 16 2 C 0.13 1.01 6.75 -4.05 -0.03 0.98 16 3 N -0.36 -4.62 3.58 -56.61 -0.20 -4.82 16 4 N -0.30 -4.44 12.50 30.86 0.39 -4.06 16 5 C 0.08 1.25 10.05 -16.98 -0.17 1.08 16 6 C -0.28 -4.73 5.66 -105.06 -0.59 -5.32 16 7 C 0.60 12.35 7.56 -12.52 -0.09 12.26 16 8 O -0.56 -13.07 16.38 5.27 0.09 -12.98 16 9 N -0.60 -12.72 3.33 -171.77 -0.57 -13.29 16 10 C 0.10 1.81 5.36 -2.53 -0.01 1.80 16 11 C -0.12 -2.37 6.23 -24.59 -0.15 -2.52 16 12 C 0.25 6.02 0.86 -89.93 -0.08 5.94 16 13 O -0.59 -14.87 13.07 -35.23 -0.46 -15.33 16 14 C -0.54 -14.02 8.12 -34.44 -0.28 -14.30 16 15 H 0.07 1.71 7.76 -52.49 -0.41 1.30 16 16 C 0.07 1.83 5.28 -17.82 -0.09 1.73 16 17 N -0.90 -23.85 10.97 55.43 0.61 -23.24 16 18 Si 0.90 20.41 29.54 -169.99 -5.02 15.38 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 22 C 0.10 2.55 5.55 -3.06 -0.02 2.53 16 23 C 0.14 2.03 7.00 -81.60 -0.57 1.46 16 24 C -0.09 -1.06 9.28 36.00 0.33 -0.72 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.09 0.55 7.62 -51.93 -0.40 0.15 16 29 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.19 2.52 6.50 -52.49 -0.34 2.18 16 31 H 0.06 1.00 6.58 -51.93 -0.34 0.66 16 32 H 0.06 1.10 7.70 -51.93 -0.40 0.70 16 33 H 0.08 1.46 8.03 -51.93 -0.42 1.05 16 34 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 35 H 0.39 10.11 6.98 45.56 0.32 10.42 16 36 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 37 H 0.06 1.72 8.07 -51.93 -0.42 1.30 16 38 H 0.06 1.70 7.82 -51.93 -0.41 1.29 16 39 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.07 0.56 7.70 -51.92 -0.40 0.16 16 41 H 0.09 1.29 7.52 -51.93 -0.39 0.90 16 LS Contribution 338.03 15.07 5.09 5.09 Total: -1.00 -31.38 338.03 -6.73 -38.11 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -5.27 Total: 11.03 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: -1.38 Total: 4.11 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: 0.22 Total: -45.42 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -0.37 Total: -28.31 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.38 -6.73 -38.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601651827.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.683 kcal (2) G-P(sol) polarization free energy of solvation -31.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds