Wall clock time and date at job start Tue Mar 31 2020 02:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46493 * 109.47205 * 2 1 4 4 N 1.39938 * 125.75525 * 89.97418 * 3 2 1 5 5 C 1.30445 * 108.90209 * 180.02562 * 4 3 2 6 6 C 1.41293 * 108.01930 * 359.97438 * 5 4 3 7 7 C 1.47432 * 126.41177 * 179.73556 * 6 5 4 8 8 O 1.21603 * 119.99746 * 146.09833 * 7 6 5 9 9 N 1.34766 * 120.00374 * 326.10219 * 7 6 5 10 10 C 1.47430 * 125.64979 * 4.33541 * 9 7 6 11 11 C 1.54906 * 104.83620 * 204.09396 * 10 9 7 12 12 C 1.55155 * 101.58042 * 322.99261 * 11 10 9 13 13 O 1.42903 * 110.71887 * 277.13561 * 12 11 10 14 14 C 1.50706 * 110.72142 * 154.04132 * 12 11 10 15 15 H 1.07996 * 119.99546 * 0.02562 * 14 12 11 16 16 C 1.37875 * 120.00109 * 179.97438 * 14 12 11 17 17 N 1.31517 * 119.99719 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 119.99739 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47128 * 90.00644 * 18 16 14 20 20 H 1.48501 * 109.46986 * 210.00026 * 18 16 14 21 21 H 1.48496 * 109.47563 * 330.00121 * 18 16 14 22 22 C 1.47024 * 125.65060 * 184.03215 * 9 7 6 23 23 C 1.34265 * 125.75606 * 270.01708 * 3 2 1 24 24 C 1.50690 * 126.29056 * 359.94271 * 23 3 2 25 25 H 1.09003 * 109.46784 * 60.00021 * 1 2 3 26 26 H 1.09001 * 109.47096 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47596 * 300.00094 * 1 2 3 28 28 H 1.08999 * 109.47083 * 240.00029 * 2 1 3 29 29 H 1.08997 * 109.47114 * 120.00266 * 2 1 3 30 30 H 1.07995 * 125.99450 * 179.97438 * 5 4 3 31 31 H 1.09005 * 110.36585 * 322.93675 * 10 9 7 32 32 H 1.09000 * 110.36521 * 85.14241 * 10 9 7 33 33 H 1.08996 * 111.00050 * 81.06206 * 11 10 9 34 34 H 1.08996 * 111.00628 * 204.91655 * 11 10 9 35 35 H 0.96704 * 113.99913 * 180.02562 * 13 12 11 36 36 H 0.97001 * 119.99536 * 179.97438 * 17 16 14 37 37 H 1.08997 * 109.88023 * 298.39218 * 22 9 7 38 38 H 1.08996 * 109.88369 * 59.56103 * 22 9 7 39 39 H 1.09004 * 109.47317 * 270.02799 * 24 23 3 40 40 H 1.09009 * 109.47315 * 30.02424 * 24 23 3 41 41 H 1.08998 * 109.47642 * 150.02416 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 7 2.2904 2.1522 1.1356 5 6 2.7062 3.3294 0.7574 6 6 2.7166 3.3562 -0.6552 7 6 3.1127 4.4932 -1.5060 8 8 3.6657 4.2925 -2.5703 9 7 2.8622 5.7550 -1.1043 10 6 2.2841 6.1443 0.1949 11 6 1.6388 7.5298 -0.0573 12 6 2.6541 8.1722 -1.0390 13 8 3.7527 8.7451 -0.3269 14 6 1.9803 9.2094 -1.8999 15 1 0.9263 9.4108 -1.7775 16 6 2.7095 9.9020 -2.8431 17 7 3.9931 9.6570 -2.9917 18 14 1.8743 11.1881 -3.9097 19 1 1.9509 12.5117 -3.2406 20 1 2.5576 11.2589 -5.2263 21 1 0.4507 10.8165 -4.1102 22 6 3.1258 6.9717 -1.8864 23 6 2.2795 2.1209 -1.0896 24 6 2.1254 1.6827 -2.5231 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 2.9923 4.1412 1.4097 31 1 1.5269 5.4238 0.5044 32 1 3.0659 6.2200 0.9506 33 1 0.6585 7.4253 -0.5221 34 1 1.5721 8.1038 0.8669 35 1 4.4161 9.1602 -0.8950 36 1 4.5060 10.1440 -3.6556 37 1 4.1930 7.0566 -2.0913 38 1 2.5680 6.9389 -2.8222 39 1 3.0573 1.2348 -2.8683 40 1 1.3217 0.9498 -2.5947 41 1 1.8858 2.5464 -3.1434 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601651827.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:46 Heat of formation + Delta-G solvation = -34.044107 kcal Electronic energy + Delta-G solvation = -24095.792641 eV Core-core repulsion = 20590.308595 eV Total energy + Delta-G solvation = -3505.484046 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.53142 -40.64165 -38.77059 -36.14866 -35.51425 -34.15485 -33.18239 -31.88620 -30.71601 -29.52226 -28.43699 -26.90153 -24.83184 -24.57527 -22.65401 -21.56762 -20.99045 -19.85332 -19.14098 -18.29359 -17.32073 -17.18279 -16.64032 -16.43884 -16.17724 -15.93408 -15.43363 -14.90000 -14.79243 -14.67248 -14.63189 -14.08962 -13.94602 -13.58313 -13.46750 -13.43510 -13.30001 -13.13447 -12.84167 -12.82174 -12.48156 -12.33828 -12.28664 -12.25038 -12.06641 -11.84666 -11.18997 -10.94551 -10.62271 -10.37565 -10.26355 -9.75326 -9.41763 -8.25695 -6.41861 0.52637 1.16316 1.37891 1.42800 1.44328 1.54157 2.09516 2.32320 2.41397 3.00499 3.44167 3.57373 3.82462 3.86334 3.94084 4.07568 4.14120 4.18070 4.31401 4.35379 4.39595 4.47821 4.59463 4.64556 4.72644 4.75909 4.85988 4.90645 5.01874 5.03737 5.13811 5.23155 5.27963 5.37766 5.41792 5.54720 5.76989 5.92895 6.05556 6.52015 6.63681 6.73402 7.24998 7.30407 7.40212 8.80539 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.027708 B = 0.003854 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.277964 B = 7263.818314 C = 7528.256051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.113 3.887 3 N -0.353 5.353 4 N -0.313 5.313 5 C 0.083 3.917 6 C -0.314 4.314 7 C 0.595 3.405 8 O -0.596 6.596 9 N -0.611 5.611 10 C 0.108 3.892 11 C -0.113 4.113 12 C 0.234 3.766 13 O -0.590 6.590 14 C -0.558 4.558 15 H 0.068 0.932 16 C 0.025 3.975 17 N -0.918 5.918 18 Si 0.965 3.035 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.267 1.267 22 C 0.122 3.878 23 C 0.152 3.848 24 C -0.090 4.090 25 H 0.058 0.942 26 H 0.107 0.893 27 H 0.050 0.950 28 H 0.122 0.878 29 H 0.109 0.891 30 H 0.202 0.798 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.378 0.622 36 H 0.271 0.729 37 H 0.029 0.971 38 H 0.034 0.966 39 H 0.096 0.904 40 H 0.109 0.891 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.283 -18.539 5.825 20.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.006 4.006 3 N -0.133 5.133 4 N -0.132 5.132 5 C -0.104 4.104 6 C -0.329 4.329 7 C 0.386 3.614 8 O -0.478 6.478 9 N -0.342 5.342 10 C -0.014 4.014 11 C -0.151 4.151 12 C 0.194 3.806 13 O -0.399 6.399 14 C -0.596 4.596 15 H 0.086 0.914 16 C -0.175 4.175 17 N -0.557 5.557 18 Si 0.790 3.210 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.192 1.192 22 C -0.001 4.001 23 C 0.018 3.982 24 C -0.148 4.148 25 H 0.077 0.923 26 H 0.125 0.875 27 H 0.069 0.931 28 H 0.140 0.860 29 H 0.127 0.873 30 H 0.219 0.781 31 H 0.113 0.887 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.110 0.890 35 H 0.229 0.771 36 H 0.081 0.919 37 H 0.047 0.953 38 H 0.053 0.947 39 H 0.114 0.886 40 H 0.127 0.873 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.491 -19.812 6.707 22.217 hybrid contribution 0.673 1.921 -1.957 2.824 sum -6.818 -17.890 4.750 19.726 Atomic orbital electron populations 1.22174 0.93015 1.04718 1.02432 1.22237 0.96249 0.75475 1.06636 1.48863 1.49068 1.13151 1.02238 1.77085 1.23159 1.04479 1.08482 1.24312 0.96741 0.96067 0.93257 1.19900 1.22733 0.95938 0.94289 1.17441 0.77704 0.81508 0.84701 1.90685 1.45418 1.85426 1.26309 1.48590 1.61576 1.05073 1.18975 1.22529 0.97684 0.96562 0.84615 1.22756 0.97761 0.94378 1.00160 1.19701 0.84348 0.88224 0.88359 1.86059 1.36823 1.77407 1.39586 1.21865 0.96678 1.21610 1.19458 0.91404 1.25830 0.95537 0.98565 0.97600 1.69689 1.07703 1.42479 1.35859 0.85444 0.78734 0.79096 0.77706 1.19767 1.21045 1.19177 1.22514 0.98192 0.84588 0.94790 1.21689 0.94319 0.89824 0.92377 1.20606 1.04693 1.03128 0.86370 0.92287 0.87452 0.93119 0.85965 0.87294 0.78105 0.88703 0.90575 0.90003 0.89046 0.77099 0.91943 0.95271 0.94708 0.88587 0.87296 0.91150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.68 10.24 71.98 0.74 -0.94 16 2 C 0.11 1.38 6.75 86.38 0.58 1.96 16 3 N -0.35 -7.99 3.58 -333.03 -1.19 -9.18 16 4 N -0.31 -8.47 12.50 -56.28 -0.70 -9.17 16 5 C 0.08 2.39 10.05 85.65 0.86 3.25 16 6 C -0.31 -10.45 5.66 -20.15 -0.11 -10.57 16 7 C 0.60 25.12 7.56 86.67 0.66 25.78 16 8 O -0.60 -29.13 16.38 -4.04 -0.07 -29.19 16 9 N -0.61 -26.15 3.33 -815.63 -2.71 -28.86 16 10 C 0.11 3.76 5.36 86.85 0.47 4.23 16 11 C -0.11 -4.42 6.23 31.98 0.20 -4.22 16 12 C 0.23 11.55 0.86 -10.35 -0.01 11.55 16 13 O -0.59 -30.52 13.07 -148.98 -1.95 -32.47 16 14 C -0.56 -29.57 8.12 25.60 0.21 -29.37 16 15 H 0.07 3.49 7.76 -2.91 -0.02 3.46 16 16 C 0.03 1.33 5.28 84.65 0.45 1.78 16 17 N -0.92 -50.39 10.97 21.45 0.24 -50.15 16 18 Si 0.97 42.21 29.54 68.60 2.03 44.24 16 19 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 20 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 21 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 22 C 0.12 6.23 5.55 86.73 0.48 6.72 16 23 C 0.15 4.06 7.00 42.14 0.29 4.36 16 24 C -0.09 -1.91 9.28 71.23 0.66 -1.24 16 25 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.12 0.84 7.62 -2.39 -0.02 0.83 16 29 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.20 5.02 6.50 -2.91 -0.02 5.00 16 31 H 0.09 2.75 6.58 -2.38 -0.02 2.73 16 32 H 0.08 2.48 7.70 -2.39 -0.02 2.47 16 33 H 0.08 3.08 8.03 -2.39 -0.02 3.06 16 34 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 35 H 0.38 20.58 6.98 -74.05 -0.52 20.06 16 36 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 37 H 0.03 1.65 8.07 -2.39 -0.02 1.63 16 38 H 0.03 1.93 7.82 -2.39 -0.02 1.91 16 39 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 40 H 0.11 1.38 7.70 -2.38 -0.02 1.36 16 41 H 0.07 1.89 7.52 -2.39 -0.02 1.87 16 Total: -1.00 -70.48 338.03 1.64 -68.84 By element: Atomic # 1 Polarization: 32.15 SS G_CDS: 0.53 Total: 32.68 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: 5.47 Total: 13.27 kcal Atomic # 7 Polarization: -93.00 SS G_CDS: -4.37 Total: -97.37 kcal Atomic # 8 Polarization: -59.65 SS G_CDS: -2.01 Total: -61.66 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -70.48 1.64 -68.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601651827.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.797 kcal (2) G-P(sol) polarization free energy of solvation -70.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds