Wall clock time and date at job start Tue Mar 31 2020 02:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47220 * 2 1 4 4 N 1.39934 * 125.75003 * 269.97876 * 3 2 1 5 5 C 1.30456 * 108.89459 * 179.77378 * 4 3 2 6 6 C 1.41294 * 108.01975 * 0.37538 * 5 4 3 7 7 C 1.47425 * 126.41124 * 179.88058 * 6 5 4 8 8 O 1.21597 * 120.00227 * 179.41739 * 7 6 5 9 9 N 1.34784 * 120.00099 * 359.69094 * 7 6 5 10 10 C 1.47026 * 125.64510 * 359.74903 * 9 7 6 11 11 C 1.54325 * 107.26644 * 181.02411 * 10 9 7 12 12 C 1.55159 * 102.94381 * 22.19183 * 11 10 9 13 13 O 1.42893 * 111.00083 * 82.57676 * 12 11 10 14 14 C 1.50701 * 111.00063 * 206.38609 * 12 11 10 15 15 H 1.08006 * 120.00375 * 0.02562 * 14 12 11 16 16 C 1.37881 * 119.99664 * 180.02562 * 14 12 11 17 17 N 1.31509 * 120.00070 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 119.99949 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46767 * 59.99927 * 18 16 14 20 20 H 1.48495 * 109.47209 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46998 * 300.00416 * 18 16 14 22 22 C 1.47420 * 125.64700 * 179.44051 * 9 7 6 23 23 C 1.34254 * 125.75655 * 89.99436 * 3 2 1 24 24 C 1.50709 * 126.29138 * 359.94926 * 23 3 2 25 25 H 1.09002 * 109.47029 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47273 * 300.00492 * 1 2 3 27 27 H 1.09002 * 109.47055 * 60.00325 * 1 2 3 28 28 H 1.08997 * 109.46836 * 239.99672 * 2 1 3 29 29 H 1.09002 * 109.47055 * 119.99675 * 2 1 3 30 30 H 1.08001 * 125.98632 * 180.22567 * 5 4 3 31 31 H 1.08999 * 109.88043 * 300.43842 * 10 9 7 32 32 H 1.09001 * 109.88332 * 61.60713 * 10 9 7 33 33 H 1.08995 * 110.71973 * 140.55926 * 11 10 9 34 34 H 1.09004 * 110.71929 * 263.65181 * 11 10 9 35 35 H 0.96705 * 113.99624 * 180.02562 * 13 12 11 36 36 H 0.97004 * 120.00287 * 179.97438 * 17 16 14 37 37 H 1.08998 * 110.36863 * 274.74639 * 22 9 7 38 38 H 1.08994 * 110.36906 * 37.07186 * 22 9 7 39 39 H 1.08996 * 109.46758 * 270.04036 * 24 23 3 40 40 H 1.08994 * 109.46941 * 30.03694 * 24 23 3 41 41 H 1.08993 * 109.46973 * 150.03864 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2913 2.1519 -1.1357 5 6 2.7028 3.3306 -0.7574 6 6 2.7170 3.3561 0.6552 7 6 3.1178 4.4914 1.5060 8 8 3.0750 4.3887 2.7169 9 7 3.5264 5.6452 0.9417 10 6 3.6251 5.9050 -0.5021 11 6 4.1594 7.3426 -0.6734 12 6 4.8673 7.6139 0.6804 13 8 6.1874 7.0668 0.6866 14 6 4.8954 9.0886 0.9892 15 1 4.4547 9.7933 0.2996 16 6 5.4838 9.5383 2.1523 17 7 6.0209 8.6803 2.9918 18 14 5.5193 11.3664 2.5349 19 1 4.1291 11.8827 2.6131 20 1 6.2037 11.5870 3.8341 21 1 6.2536 12.0826 1.4611 22 6 3.9421 6.8578 1.6698 23 6 2.2798 2.1209 1.0895 24 6 2.1238 1.6833 2.5232 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 2.9855 4.1436 -1.4098 31 1 4.3150 5.1961 -0.9599 32 1 2.6410 5.8179 -0.9626 33 1 4.8706 7.3940 -1.4977 34 1 3.3388 8.0429 -0.8297 35 1 6.6690 7.2112 1.5127 36 1 6.4352 8.9966 3.8099 37 1 3.0733 7.4662 1.9208 38 1 4.4914 6.5889 2.5720 39 1 1.1174 1.9205 2.8679 40 1 2.2885 0.6083 2.5949 41 1 2.8527 2.2048 3.1435 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601651828.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:52 Heat of formation + Delta-G solvation = -5.129630 kcal Electronic energy + Delta-G solvation = -24103.222459 eV Core-core repulsion = 20598.992239 eV Total energy + Delta-G solvation = -3504.230220 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.38630 -38.97564 -36.96697 -34.84326 -34.14373 -32.11640 -32.06197 -30.37196 -29.60576 -27.88261 -27.17547 -25.15565 -23.86172 -23.20892 -21.18129 -20.23041 -19.46384 -18.48840 -17.22431 -16.90184 -15.93560 -15.56152 -15.17277 -14.88970 -14.76219 -14.46381 -14.11074 -13.88972 -13.27500 -13.18643 -12.95115 -12.92778 -12.69223 -12.50058 -12.39505 -12.12196 -11.89775 -11.60125 -11.51047 -11.32398 -11.00218 -10.74303 -10.66799 -10.54114 -10.46899 -10.14381 -9.39009 -9.35921 -9.18681 -8.64780 -8.48226 -8.31798 -7.65055 -6.25952 -4.35404 1.66542 2.33704 2.40580 3.23787 3.29610 3.31332 3.78030 3.96097 4.27833 4.34449 4.59252 4.66704 4.82645 4.92661 5.00939 5.06484 5.22556 5.34431 5.40953 5.45730 5.54706 5.61889 5.69523 5.71249 5.87943 5.90155 6.06511 6.12448 6.29703 6.55149 6.56273 6.77363 6.90914 6.91918 7.10607 7.31645 7.39316 7.65786 7.77507 8.03256 8.36005 8.67425 8.92351 9.34257 9.50595 10.81219 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.034636 B = 0.003736 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.206951 B = 7493.114455 C = 7913.869278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.125 3.875 3 N -0.365 5.365 4 N -0.306 5.306 5 C 0.071 3.929 6 C -0.282 4.282 7 C 0.600 3.400 8 O -0.560 6.560 9 N -0.603 5.603 10 C 0.100 3.900 11 C -0.120 4.120 12 C 0.250 3.750 13 O -0.584 6.584 14 C -0.538 4.538 15 H 0.066 0.934 16 C 0.071 3.929 17 N -0.895 5.895 18 Si 0.904 3.096 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.275 1.275 22 C 0.096 3.904 23 C 0.148 3.852 24 C -0.096 4.096 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.200 0.800 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.386 0.614 36 H 0.271 0.729 37 H 0.059 0.941 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.711 -14.610 -4.959 17.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.004 3.996 3 N -0.146 5.146 4 N -0.125 5.125 5 C -0.116 4.116 6 C -0.297 4.297 7 C 0.389 3.611 8 O -0.441 6.441 9 N -0.335 5.335 10 C -0.024 4.024 11 C -0.158 4.158 12 C 0.209 3.791 13 O -0.394 6.394 14 C -0.576 4.576 15 H 0.085 0.915 16 C -0.132 4.132 17 N -0.534 5.534 18 Si 0.732 3.268 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.025 4.025 23 C 0.017 3.983 24 C -0.154 4.154 25 H 0.096 0.904 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.115 0.885 29 H 0.112 0.888 30 H 0.216 0.784 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.238 0.762 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.084 0.916 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.135 -15.820 -5.732 19.146 hybrid contribution 0.320 1.638 1.371 2.160 sum -8.815 -14.183 -4.361 17.259 Atomic orbital electron populations 1.22184 0.94128 1.03057 1.03447 1.21706 0.95367 0.77955 1.04533 1.48516 1.50439 1.12116 1.03510 1.77140 1.23252 1.04562 1.07523 1.24782 0.96621 0.95581 0.94588 1.20143 1.19479 0.96423 0.93628 1.16808 0.77095 0.80705 0.86494 1.90682 1.56902 1.82448 1.14077 1.48433 1.64176 1.13142 1.07724 1.22267 0.99057 0.98649 0.82395 1.22663 0.99764 0.93413 0.99944 1.19611 0.80418 0.90830 0.88275 1.86063 1.28417 1.81231 1.43672 1.21477 1.38683 0.91642 1.05841 0.91536 1.25078 0.94041 0.98662 0.95434 1.69558 1.37705 1.34447 1.11692 0.86451 0.78429 0.84341 0.77610 1.20020 1.21101 1.20018 1.23285 0.98463 0.82808 0.97948 1.21455 0.95084 0.90825 0.90969 1.20652 1.04963 1.01073 0.88724 0.90437 0.91869 0.91509 0.88519 0.88821 0.78401 0.91830 0.92437 0.90660 0.90430 0.76200 0.91845 0.92230 0.89983 0.89833 0.91555 0.87394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 10.24 37.16 0.38 -0.82 16 2 C 0.13 1.04 6.93 -4.04 -0.03 1.01 16 3 N -0.37 -4.78 3.58 -56.60 -0.20 -4.99 16 4 N -0.31 -4.61 12.50 30.86 0.39 -4.23 16 5 C 0.07 1.11 10.45 -16.97 -0.18 0.93 16 6 C -0.28 -4.94 6.09 -105.07 -0.64 -5.58 16 7 C 0.60 12.58 7.85 -12.52 -0.10 12.49 16 8 O -0.56 -13.09 15.09 5.28 0.08 -13.01 16 9 N -0.60 -12.77 3.32 -171.65 -0.57 -13.34 16 10 C 0.10 1.77 4.98 -3.06 -0.02 1.75 16 11 C -0.12 -2.36 6.12 -24.89 -0.15 -2.52 16 12 C 0.25 6.04 0.89 -89.50 -0.08 5.96 16 13 O -0.58 -15.08 13.19 -35.23 -0.46 -15.55 16 14 C -0.54 -13.94 8.25 -34.44 -0.28 -14.22 16 15 H 0.07 1.68 7.77 -52.48 -0.41 1.27 16 16 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 17 N -0.89 -23.87 10.72 55.43 0.59 -23.28 16 18 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 19 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 22 C 0.10 2.33 5.65 -2.41 -0.01 2.32 16 23 C 0.15 2.19 7.01 -81.60 -0.57 1.62 16 24 C -0.10 -1.16 9.57 36.01 0.34 -0.81 16 25 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.09 0.58 7.02 -51.93 -0.36 0.21 16 30 H 0.20 2.73 4.47 -52.49 -0.23 2.49 16 31 H 0.06 1.07 6.88 -51.93 -0.36 0.71 16 32 H 0.06 0.86 6.96 -51.93 -0.36 0.50 16 33 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.08 1.43 8.02 -51.93 -0.42 1.01 16 35 H 0.39 10.34 6.93 45.56 0.32 10.66 16 36 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 37 H 0.06 1.47 8.04 -51.93 -0.42 1.05 16 38 H 0.08 2.23 7.64 -51.93 -0.40 1.83 16 39 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.07 0.58 7.05 -51.93 -0.37 0.21 16 41 H 0.11 1.58 6.51 -51.93 -0.34 1.25 16 LS Contribution 333.01 15.07 5.02 5.02 Total: -1.00 -31.31 333.01 -6.63 -37.94 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -5.02 Total: 12.27 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -1.43 Total: 3.89 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: 0.21 Total: -45.83 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -0.39 Total: -28.56 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.31 -6.63 -37.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601651828.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.811 kcal (2) G-P(sol) polarization free energy of solvation -31.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds