Wall clock time and date at job start Tue Mar 31 2020 03:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86799 * 120.00136 * 2 1 4 4 H 1.48497 * 109.47416 * 269.99846 * 3 2 1 5 5 H 1.48499 * 109.47200 * 30.00156 * 3 2 1 6 6 H 1.48505 * 109.47090 * 149.99809 * 3 2 1 7 7 C 1.38956 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99828 * 199.09362 * 7 2 1 9 9 N 1.37100 * 119.99734 * 19.09056 * 7 2 1 10 10 C 1.34780 * 119.99849 * 42.84025 * 9 7 2 11 11 O 1.21290 * 120.00159 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99682 * 179.97438 * 10 9 7 13 13 C 1.52998 * 109.46998 * 179.97438 * 12 10 9 14 14 C 1.52994 * 109.47390 * 180.02562 * 13 12 10 15 15 C 1.50698 * 109.47682 * 180.02562 * 14 13 12 16 16 N 1.33319 * 126.54629 * 269.69506 * 15 14 13 17 17 N 1.29004 * 107.35087 * 179.83324 * 16 15 14 18 18 N 1.28781 * 108.72580 * 0.42444 * 17 16 15 19 19 H 0.96997 * 125.44715 * 179.73866 * 18 17 16 20 20 N 1.28878 * 109.10296 * 359.72592 * 18 17 16 21 21 C 1.46496 * 119.99948 * 222.83084 * 9 7 2 22 22 C 1.54265 * 110.03197 * 59.59303 * 21 9 7 23 23 C 1.54962 * 104.16043 * 217.13674 * 22 21 9 24 24 C 1.54892 * 102.78107 * 37.88528 * 23 22 21 25 25 C 1.53872 * 110.03632 * 302.37402 * 21 9 7 26 26 H 0.97003 * 119.99841 * 354.75784 * 1 2 3 27 27 H 1.09003 * 109.47194 * 59.99930 * 12 10 9 28 28 H 1.08994 * 109.46983 * 299.99347 * 12 10 9 29 29 H 1.09004 * 109.47116 * 299.99823 * 13 12 10 30 30 H 1.09001 * 109.47020 * 59.99696 * 13 12 10 31 31 H 1.09004 * 109.46794 * 299.99955 * 14 13 12 32 32 H 1.09001 * 109.47341 * 59.99828 * 14 13 12 33 33 H 1.09006 * 110.01536 * 180.97830 * 21 9 7 34 34 H 1.09001 * 110.48719 * 335.78027 * 22 21 9 35 35 H 1.09003 * 110.49106 * 98.42144 * 22 21 9 36 36 H 1.09004 * 110.72008 * 279.56958 * 23 22 21 37 37 H 1.09004 * 110.92512 * 156.29477 * 23 22 21 38 38 H 1.08992 * 110.49030 * 203.41182 * 24 23 22 39 39 H 1.08998 * 110.60030 * 80.81516 * 24 23 22 40 40 H 1.08999 * 110.03086 * 238.57183 * 25 21 9 41 41 H 1.09003 * 110.03192 * 359.97438 * 25 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.7001 7 6 2.0089 -1.2034 -0.0005 8 1 3.0443 -1.2292 0.3054 9 7 1.3799 -2.3579 -0.3894 10 6 0.5747 -2.3554 -1.4702 11 8 0.4062 -1.3317 -2.0986 12 6 -0.1162 -3.6245 -1.8980 13 6 -0.9638 -3.3495 -3.1417 14 6 -1.6658 -4.6378 -3.5757 15 6 -2.5001 -4.3671 -4.8010 16 7 -3.7770 -3.9845 -4.8234 17 7 -4.1189 -3.8573 -6.0608 18 7 -3.1082 -4.1543 -6.8016 19 1 -3.0991 -4.1434 -7.7715 20 7 -2.1108 -4.4680 -6.0482 21 6 1.5831 -3.5942 0.3698 22 6 1.1285 -3.3979 1.8308 23 6 2.1577 -4.2068 2.6600 24 6 3.4855 -3.9465 1.9062 25 6 3.0810 -3.9433 0.4176 26 1 -0.4850 0.8366 0.0768 27 1 -0.7589 -3.9779 -1.0916 28 1 0.6302 -4.3849 -2.1275 29 1 -1.7103 -2.5892 -2.9118 30 1 -0.3214 -2.9959 -3.9482 31 1 -0.9196 -5.3984 -3.8054 32 1 -2.3082 -4.9910 -2.7690 33 1 1.0240 -4.4098 -0.0888 34 1 1.1642 -2.3430 2.1030 35 1 0.1240 -3.7961 1.9746 36 1 1.9106 -5.2685 2.6518 37 1 2.2142 -3.8328 3.6823 38 1 4.2002 -4.7449 2.1055 39 1 3.9046 -2.9811 2.1897 40 1 3.2487 -4.9287 -0.0171 41 1 3.6567 -3.1931 -0.1245 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602101755.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:32 Heat of formation + Delta-G solvation = 56.476668 kcal Electronic energy + Delta-G solvation = -23715.322812 eV Core-core repulsion = 20246.056793 eV Total energy + Delta-G solvation = -3469.266019 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -45.45207 -40.54288 -38.35597 -36.49760 -35.18171 -34.94990 -33.71314 -33.09721 -29.47936 -29.30878 -28.28077 -26.48981 -25.54859 -24.16368 -22.40787 -21.31705 -21.28901 -20.58048 -20.11568 -18.14740 -18.03384 -17.55072 -16.75025 -16.46947 -16.12208 -15.75207 -15.66587 -15.16601 -14.85331 -14.54864 -14.04090 -14.00243 -13.54275 -13.43355 -13.01862 -12.90732 -12.85499 -12.54002 -12.39144 -12.29716 -12.27923 -12.14281 -12.05316 -12.01104 -11.76451 -11.70426 -11.57177 -11.29093 -11.22272 -11.18793 -10.68001 -9.86063 -8.92833 -8.11870 -5.83759 0.13792 1.05180 1.35811 1.43997 1.47976 1.53485 2.33708 2.61303 2.90164 3.29297 3.33778 3.34974 3.96478 4.00166 4.05914 4.14339 4.20399 4.33636 4.51068 4.57966 4.64100 4.73032 4.78699 4.79512 4.84526 4.91736 4.93364 5.00051 5.02371 5.21713 5.25986 5.29039 5.36808 5.43242 5.51786 5.65271 5.65900 5.67467 5.77069 6.32398 7.16445 7.21992 7.37110 7.87404 8.53515 8.97759 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.015545 B = 0.004238 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.833801 B = 6605.330783 C = 7882.170028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.022 3.978 3 Si 0.956 3.044 4 H -0.296 1.296 5 H -0.286 1.286 6 H -0.254 1.254 7 C -0.340 4.340 8 H 0.075 0.925 9 N -0.463 5.463 10 C 0.454 3.546 11 O -0.596 6.596 12 C -0.119 4.119 13 C -0.079 4.079 14 C -0.015 4.015 15 C 0.174 3.826 16 N -0.307 5.307 17 N -0.066 5.066 18 N -0.207 5.207 19 H 0.491 0.509 20 N -0.305 5.305 21 C 0.120 3.880 22 C -0.127 4.127 23 C -0.110 4.110 24 C -0.115 4.115 25 C -0.127 4.127 26 H 0.253 0.747 27 H 0.095 0.905 28 H 0.112 0.888 29 H 0.034 0.966 30 H 0.048 0.952 31 H 0.124 0.876 32 H 0.115 0.885 33 H 0.098 0.902 34 H 0.042 0.958 35 H 0.058 0.942 36 H 0.088 0.912 37 H 0.064 0.936 38 H 0.084 0.916 39 H 0.043 0.957 40 H 0.086 0.914 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.144 -15.598 -4.833 16.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.184 4.184 3 Si 0.783 3.217 4 H -0.223 1.223 5 H -0.212 1.212 6 H -0.178 1.178 7 C -0.468 4.468 8 H 0.093 0.907 9 N -0.184 5.184 10 C 0.243 3.757 11 O -0.478 6.478 12 C -0.159 4.159 13 C -0.119 4.119 14 C -0.055 4.055 15 C -0.109 4.109 16 N -0.180 5.180 17 N -0.061 5.061 18 N -0.058 5.058 19 H 0.350 0.650 20 N -0.157 5.157 21 C 0.017 3.983 22 C -0.165 4.165 23 C -0.148 4.148 24 C -0.152 4.152 25 C -0.166 4.166 26 H 0.062 0.938 27 H 0.113 0.887 28 H 0.130 0.870 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.142 0.858 32 H 0.133 0.867 33 H 0.116 0.884 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.103 0.897 39 H 0.062 0.938 40 H 0.105 0.895 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.919 -14.813 -5.492 15.824 hybrid contribution 0.450 1.666 -0.458 1.785 sum -0.470 -13.147 -5.950 14.438 Atomic orbital electron populations 1.69940 1.07787 1.26918 1.45952 1.25893 0.95310 1.02081 0.95074 0.85515 0.79286 0.79712 0.77190 1.22311 1.21178 1.17816 1.18988 0.94914 0.85515 1.47392 0.90735 1.43685 1.43587 1.08144 1.23018 1.21028 0.82977 0.90499 0.81175 1.90484 1.64480 1.36547 1.56294 1.21512 0.99845 0.96081 0.98442 1.21006 0.97845 0.96125 0.96909 1.20121 0.97378 0.98491 0.89540 1.26099 0.90903 0.99643 0.94238 1.75892 1.13473 1.18167 1.10431 1.78861 1.14721 1.15504 0.97060 1.47825 1.03858 1.40561 1.13520 0.65035 1.74692 1.15921 1.21710 1.03418 1.22052 0.96590 0.87326 0.92376 1.22598 0.98633 1.00027 0.95288 1.22414 0.94061 1.00299 0.97998 1.22252 0.97664 1.01004 0.94330 1.22431 0.95340 1.01263 0.97543 0.93758 0.88662 0.86960 0.94674 0.93340 0.85768 0.86716 0.88392 0.93922 0.92290 0.89343 0.91753 0.89702 0.93794 0.89496 0.93689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -53.77 11.67 21.66 0.25 -53.52 16 2 C 0.02 1.27 4.35 84.93 0.37 1.64 16 3 Si 0.96 46.91 29.60 68.60 2.03 48.94 16 4 H -0.30 -15.17 7.11 99.48 0.71 -14.47 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.25 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.34 -18.57 7.45 84.04 0.63 -17.94 16 8 H 0.08 3.98 7.08 -2.91 -0.02 3.96 16 9 N -0.46 -22.30 2.46 -609.38 -1.50 -23.80 16 10 C 0.45 22.58 6.97 87.66 0.61 23.19 16 11 O -0.60 -36.24 13.63 -3.06 -0.04 -36.28 16 12 C -0.12 -4.06 4.01 29.85 0.12 -3.94 16 13 C -0.08 -2.68 4.49 30.59 0.14 -2.55 16 14 C -0.02 -0.36 5.84 29.85 0.17 -0.19 16 15 C 0.17 4.76 7.62 138.55 1.06 5.82 16 16 N -0.31 -9.34 12.50 -51.26 -0.64 -9.98 16 17 N -0.07 -1.71 13.48 37.02 0.50 -1.21 16 18 N -0.21 -4.01 7.91 37.00 0.29 -3.71 16 19 H 0.49 4.29 8.96 -347.67 -3.12 1.17 16 20 N -0.30 -7.41 12.36 -51.20 -0.63 -8.05 16 21 C 0.12 4.31 3.20 45.72 0.15 4.46 16 22 C -0.13 -4.48 6.42 31.69 0.20 -4.28 16 23 C -0.11 -2.86 6.91 31.91 0.22 -2.64 16 24 C -0.11 -3.10 6.83 31.67 0.22 -2.89 16 25 C -0.13 -3.92 6.19 31.32 0.19 -3.72 16 26 H 0.25 15.34 8.32 -92.71 -0.77 14.56 16 27 H 0.10 2.92 7.81 -2.39 -0.02 2.90 16 28 H 0.11 2.97 7.78 -2.39 -0.02 2.95 16 29 H 0.03 1.45 8.10 -2.38 -0.02 1.43 16 30 H 0.05 1.81 8.10 -2.39 -0.02 1.79 16 31 H 0.12 2.17 8.14 -2.38 -0.02 2.15 16 32 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.10 2.89 5.82 -2.38 -0.01 2.87 16 34 H 0.04 1.91 7.10 -2.39 -0.02 1.89 16 35 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 37 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.04 1.65 6.85 -2.39 -0.02 1.64 16 Total: -1.00 -81.04 336.30 2.27 -78.77 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -2.07 Total: 11.86 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: 4.08 Total: -3.04 kcal Atomic # 7 Polarization: -98.54 SS G_CDS: -1.73 Total: -100.26 kcal Atomic # 8 Polarization: -36.24 SS G_CDS: -0.04 Total: -36.28 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.94 kcal Total: -81.04 2.27 -78.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602101755.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.249 kcal (2) G-P(sol) polarization free energy of solvation -81.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds