Wall clock time and date at job start Tue Mar 31 2020 03:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30831 * 125.96322 * 2 1 4 4 C 1.33242 * 109.82810 * 180.12398 * 3 2 1 5 5 C 1.50697 * 125.52339 * 179.85622 * 4 3 2 6 6 C 1.50700 * 109.47266 * 269.71764 * 5 4 3 7 7 O 1.21279 * 120.00113 * 0.02562 * 6 5 4 8 8 N 1.34784 * 119.99961 * 180.02562 * 6 5 4 9 9 C 1.47077 * 120.87966 * 359.72418 * 8 6 5 10 10 C 1.53696 * 108.27500 * 128.75430 * 9 8 6 11 11 N 1.46901 * 109.25943 * 54.08018 * 10 9 8 12 12 C 1.46897 * 111.00064 * 172.60622 * 11 10 9 13 13 C 1.50703 * 109.47464 * 294.30071 * 12 11 10 14 14 H 1.08004 * 119.99493 * 0.02562 * 13 12 11 15 15 C 1.37869 * 120.00347 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99990 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00336 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.46925 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47021 * 119.99672 * 17 15 13 20 20 H 1.48494 * 109.47317 * 240.00227 * 17 15 13 21 21 C 1.46899 * 111.26575 * 296.75840 * 11 10 9 22 22 C 1.47082 * 120.87969 * 180.02562 * 8 6 5 23 23 N 1.30712 * 108.94657 * 359.59358 * 4 3 2 24 24 N 1.34434 * 125.96010 * 179.67564 * 2 1 3 25 25 H 0.97001 * 126.82366 * 0.02562 * 24 2 1 26 26 H 1.08993 * 109.47198 * 270.33002 * 1 2 3 27 27 H 1.09007 * 109.46937 * 30.32654 * 1 2 3 28 28 H 1.08996 * 109.47527 * 150.32367 * 1 2 3 29 29 H 1.09004 * 109.47205 * 149.71858 * 5 4 3 30 30 H 1.08997 * 109.47395 * 29.72350 * 5 4 3 31 31 H 1.09000 * 109.62570 * 248.52235 * 9 8 6 32 32 H 1.09001 * 109.63406 * 9.10037 * 9 8 6 33 33 H 1.09003 * 109.65081 * 294.07349 * 10 9 8 34 34 H 1.09003 * 109.44330 * 173.95722 * 10 9 8 35 35 H 1.08995 * 109.47312 * 54.30663 * 12 11 10 36 36 H 1.09005 * 109.46942 * 174.30699 * 12 11 10 37 37 H 0.96997 * 120.00305 * 180.02562 * 16 15 13 38 38 H 1.08999 * 109.49144 * 303.13633 * 21 11 10 39 39 H 1.09006 * 109.48871 * 183.06074 * 21 11 10 40 40 H 1.09002 * 109.62469 * 350.89608 * 22 8 6 41 41 H 1.08992 * 109.62526 * 111.47804 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5553 0.6887 -0.0027 5 6 4.7372 1.6235 -0.0067 6 6 5.1321 1.9280 -1.4288 7 8 4.5143 1.4349 -2.3485 8 7 6.1719 2.7485 -1.6785 9 6 6.9308 3.3617 -0.5780 10 6 8.4252 3.0906 -0.8133 11 7 8.7962 3.5543 -2.1569 12 6 10.2491 3.4753 -2.3586 13 6 10.9382 4.4452 -1.4336 14 1 10.3551 5.0586 -0.7627 15 6 12.3129 4.5495 -1.4439 16 7 13.0229 3.8029 -2.2612 17 14 13.1671 5.7512 -0.2969 18 1 12.1511 6.4670 0.5160 19 1 14.0863 5.0086 0.6026 20 1 13.9429 6.7327 -1.0967 21 6 8.0787 2.8042 -3.1964 22 6 6.5736 3.0593 -3.0588 23 7 3.6194 -0.6169 0.0043 24 7 2.2964 -1.0881 0.0062 25 1 2.0093 -2.0147 0.0111 26 1 -0.3633 0.0059 1.0276 27 1 -0.3633 0.8871 -0.5189 28 1 -0.3634 -0.8928 -0.5088 29 1 5.5740 1.1534 0.5100 30 1 4.4699 2.5494 0.5024 31 1 6.7486 4.4363 -0.5619 32 1 6.6221 2.9210 0.3700 33 1 8.6213 2.0215 -0.7305 34 1 9.0130 3.6269 -0.0682 35 1 10.5912 2.4630 -2.1440 36 1 10.4867 3.7277 -3.3920 37 1 13.9901 3.8759 -2.2682 38 1 8.2796 1.7392 -3.0805 39 1 8.4149 3.1332 -4.1797 40 1 6.0286 2.4184 -3.7519 41 1 6.3578 4.1053 -3.2761 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602201093.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:19 Heat of formation + Delta-G solvation = 58.967459 kcal Electronic energy + Delta-G solvation = -23165.405972 eV Core-core repulsion = 19696.247962 eV Total energy + Delta-G solvation = -3469.158011 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.33561 -39.89091 -37.49548 -34.39077 -33.88747 -32.57586 -32.44345 -31.12951 -29.86470 -28.30184 -27.71619 -25.42140 -23.32431 -22.44263 -21.69250 -21.05891 -20.20440 -18.63720 -18.02625 -17.18874 -16.39194 -15.93523 -15.55752 -15.44333 -14.76857 -14.51239 -14.40335 -14.07676 -13.73257 -13.63822 -13.50353 -13.15666 -13.05108 -12.97478 -12.27254 -12.15598 -11.98937 -11.86758 -11.28579 -11.04997 -10.96957 -10.74337 -10.64062 -10.50708 -10.33969 -10.20702 -9.90391 -9.80776 -9.48508 -9.26630 -8.50662 -8.42027 -7.32326 -6.06491 -4.08555 1.39038 2.39883 2.58361 2.72918 3.22470 3.28774 3.36543 3.40397 3.73681 4.31112 4.38746 4.50634 4.62908 4.80583 4.93600 5.00200 5.20604 5.27799 5.30944 5.38245 5.41368 5.43007 5.54885 5.67102 5.78655 5.87058 6.04599 6.06539 6.20775 6.30405 6.46420 6.47885 6.69667 6.82682 7.22312 7.28300 7.54426 7.74512 7.90985 8.01622 8.12140 8.26842 8.47299 8.99028 9.56121 11.04373 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.036418 B = 0.002810 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.672730 B = 9963.240883 C =10249.571391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.281 3.719 3 N -0.531 5.531 4 C 0.255 3.745 5 C -0.050 4.050 6 C 0.524 3.476 7 O -0.542 6.542 8 N -0.607 5.607 9 C 0.107 3.893 10 C 0.049 3.951 11 N -0.536 5.536 12 C 0.193 3.807 13 C -0.508 4.508 14 H 0.065 0.935 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.898 3.102 18 H -0.271 1.271 19 H -0.285 1.285 20 H -0.284 1.284 21 C 0.041 3.959 22 C 0.120 3.880 23 N -0.304 5.304 24 N -0.483 5.483 25 H 0.439 0.561 26 H 0.091 0.909 27 H 0.098 0.902 28 H 0.082 0.918 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.026 0.974 34 H 0.098 0.902 35 H -0.009 1.009 36 H 0.032 0.968 37 H 0.261 0.739 38 H 0.027 0.973 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.607 -7.156 6.295 24.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.003 3.997 3 N -0.260 5.260 4 C -0.029 4.029 5 C -0.092 4.092 6 C 0.310 3.690 7 O -0.420 6.420 8 N -0.340 5.340 9 C -0.016 4.016 10 C -0.080 4.080 11 N -0.261 5.261 12 C 0.068 3.932 13 C -0.547 4.547 14 H 0.083 0.917 15 C -0.147 4.147 16 N -0.537 5.537 17 Si 0.726 3.274 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.088 4.088 22 C -0.002 4.002 23 N -0.132 5.132 24 N -0.202 5.202 25 H 0.284 0.716 26 H 0.110 0.890 27 H 0.117 0.883 28 H 0.101 0.899 29 H 0.136 0.864 30 H 0.141 0.859 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.044 0.956 34 H 0.116 0.884 35 H 0.009 0.991 36 H 0.050 0.950 37 H 0.071 0.929 38 H 0.045 0.955 39 H 0.099 0.901 40 H 0.105 0.895 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -22.290 -6.976 5.716 24.046 hybrid contribution 0.674 -0.915 0.594 1.282 sum -21.616 -7.892 6.310 23.861 Atomic orbital electron populations 1.20381 0.83659 1.05057 1.04440 1.24360 0.96586 0.82819 0.95977 1.70293 1.01281 1.29549 1.24871 1.23287 0.92599 0.89708 0.97267 1.19952 0.93613 0.98842 0.96770 1.20084 0.79953 0.78579 0.90391 1.90690 1.53109 1.51836 1.46359 1.48173 1.30878 1.46545 1.08428 1.22169 0.92156 0.98860 0.88432 1.22425 0.93335 0.98229 0.94021 1.62075 1.10496 1.53257 1.00266 1.19734 0.79755 0.95814 0.97882 1.21175 0.91002 1.21545 1.20985 0.91698 1.25004 0.97532 0.96149 0.95975 1.69968 1.06241 1.39882 1.37609 0.86438 0.79498 0.80871 0.80580 1.19599 1.21145 1.21021 1.22415 0.92830 0.96152 0.97439 1.21757 0.95055 1.01302 0.82134 1.78001 0.96594 1.12274 1.26379 1.47930 1.04292 1.09967 1.57965 0.71574 0.89022 0.88307 0.89917 0.86379 0.85939 0.90218 0.90110 0.95577 0.88366 0.99093 0.95021 0.92926 0.95527 0.90059 0.89500 0.90815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.36 10.51 36.01 0.38 0.02 16 2 C 0.28 2.86 8.24 -155.69 -1.28 1.58 16 3 N -0.53 -7.29 11.19 -8.16 -0.09 -7.38 16 4 C 0.25 3.66 6.63 -156.86 -1.04 2.62 16 5 C -0.05 -0.62 4.69 -29.04 -0.14 -0.76 16 6 C 0.52 8.27 7.70 -10.98 -0.08 8.18 16 7 O -0.54 -10.53 15.49 5.56 0.09 -10.44 16 8 N -0.61 -9.27 3.00 -172.16 -0.52 -9.79 16 9 C 0.11 1.47 6.53 -3.37 -0.02 1.44 16 10 C 0.05 0.87 5.47 -3.46 -0.02 0.86 16 11 N -0.54 -11.06 4.62 -235.44 -1.09 -12.15 16 12 C 0.19 4.89 4.72 -4.98 -0.02 4.87 16 13 C -0.51 -13.75 8.41 -34.44 -0.29 -14.04 16 14 H 0.06 1.71 7.13 -52.48 -0.37 1.34 16 15 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 16 N -0.90 -26.28 13.29 55.43 0.74 -25.55 16 17 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 18 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 C 0.04 0.74 5.62 -3.68 -0.02 0.72 16 22 C 0.12 1.92 6.60 -3.58 -0.02 1.89 16 23 N -0.30 -4.33 12.80 32.42 0.41 -3.91 16 24 N -0.48 -4.91 7.45 32.62 0.24 -4.66 16 25 H 0.44 2.65 8.96 -182.34 -1.63 1.01 16 26 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.10 0.49 8.14 -51.92 -0.42 0.07 16 28 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 29 H 0.12 1.26 7.67 -51.93 -0.40 0.86 16 30 H 0.12 1.23 7.99 -51.93 -0.41 0.81 16 31 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.08 0.84 6.02 -51.93 -0.31 0.53 16 33 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.10 1.84 6.67 -51.93 -0.35 1.49 16 35 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 36 H 0.03 0.86 7.97 -51.93 -0.41 0.45 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 1.43 7.99 -51.93 -0.41 1.01 16 40 H 0.09 1.41 7.06 -51.93 -0.37 1.04 16 41 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 340.15 15.07 5.13 5.13 Total: -1.00 -36.29 340.15 -9.96 -46.25 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -7.19 Total: -2.36 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: -2.66 Total: 8.81 kcal Atomic # 7 Polarization: -63.14 SS G_CDS: -0.30 Total: -63.44 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.09 Total: -10.44 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -36.29 -9.96 -46.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602201093.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.216 kcal (2) G-P(sol) polarization free energy of solvation -36.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds