Wall clock time and date at job start Tue Mar 31 2020 03:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30831 * 125.96322 * 2 1 4 4 C 1.33242 * 109.82810 * 180.12398 * 3 2 1 5 5 C 1.50697 * 125.52339 * 179.85622 * 4 3 2 6 6 C 1.50700 * 109.47266 * 269.71764 * 5 4 3 7 7 O 1.21279 * 120.00113 * 0.02562 * 6 5 4 8 8 N 1.34784 * 119.99961 * 180.02562 * 6 5 4 9 9 C 1.47077 * 120.87966 * 359.72418 * 8 6 5 10 10 C 1.53696 * 108.27500 * 128.75430 * 9 8 6 11 11 N 1.46901 * 109.25943 * 54.08018 * 10 9 8 12 12 C 1.46897 * 111.00064 * 172.60622 * 11 10 9 13 13 C 1.50703 * 109.47464 * 294.30071 * 12 11 10 14 14 H 1.08004 * 119.99493 * 0.02562 * 13 12 11 15 15 C 1.37869 * 120.00347 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99990 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00336 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.46925 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47021 * 119.99672 * 17 15 13 20 20 H 1.48494 * 109.47317 * 240.00227 * 17 15 13 21 21 C 1.46899 * 111.26575 * 296.75840 * 11 10 9 22 22 C 1.47082 * 120.87969 * 180.02562 * 8 6 5 23 23 N 1.30712 * 108.94657 * 359.59358 * 4 3 2 24 24 N 1.34434 * 125.96010 * 179.67564 * 2 1 3 25 25 H 0.97001 * 126.82366 * 0.02562 * 24 2 1 26 26 H 1.08993 * 109.47198 * 270.33002 * 1 2 3 27 27 H 1.09007 * 109.46937 * 30.32654 * 1 2 3 28 28 H 1.08996 * 109.47527 * 150.32367 * 1 2 3 29 29 H 1.09004 * 109.47205 * 149.71858 * 5 4 3 30 30 H 1.08997 * 109.47395 * 29.72350 * 5 4 3 31 31 H 1.09000 * 109.62570 * 248.52235 * 9 8 6 32 32 H 1.09001 * 109.63406 * 9.10037 * 9 8 6 33 33 H 1.09003 * 109.65081 * 294.07349 * 10 9 8 34 34 H 1.09003 * 109.44330 * 173.95722 * 10 9 8 35 35 H 1.08995 * 109.47312 * 54.30663 * 12 11 10 36 36 H 1.09005 * 109.46942 * 174.30699 * 12 11 10 37 37 H 0.96997 * 120.00305 * 180.02562 * 16 15 13 38 38 H 1.08999 * 109.49144 * 303.13633 * 21 11 10 39 39 H 1.09006 * 109.48871 * 183.06074 * 21 11 10 40 40 H 1.09002 * 109.62469 * 350.89608 * 22 8 6 41 41 H 1.08992 * 109.62526 * 111.47804 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5553 0.6887 -0.0027 5 6 4.7372 1.6235 -0.0067 6 6 5.1321 1.9280 -1.4288 7 8 4.5143 1.4349 -2.3485 8 7 6.1719 2.7485 -1.6785 9 6 6.9308 3.3617 -0.5780 10 6 8.4252 3.0906 -0.8133 11 7 8.7962 3.5543 -2.1569 12 6 10.2491 3.4753 -2.3586 13 6 10.9382 4.4452 -1.4336 14 1 10.3551 5.0586 -0.7627 15 6 12.3129 4.5495 -1.4439 16 7 13.0229 3.8029 -2.2612 17 14 13.1671 5.7512 -0.2969 18 1 12.1511 6.4670 0.5160 19 1 14.0863 5.0086 0.6026 20 1 13.9429 6.7327 -1.0967 21 6 8.0787 2.8042 -3.1964 22 6 6.5736 3.0593 -3.0588 23 7 3.6194 -0.6169 0.0043 24 7 2.2964 -1.0881 0.0062 25 1 2.0093 -2.0147 0.0111 26 1 -0.3633 0.0059 1.0276 27 1 -0.3633 0.8871 -0.5189 28 1 -0.3634 -0.8928 -0.5088 29 1 5.5740 1.1534 0.5100 30 1 4.4699 2.5494 0.5024 31 1 6.7486 4.4363 -0.5619 32 1 6.6221 2.9210 0.3700 33 1 8.6213 2.0215 -0.7305 34 1 9.0130 3.6269 -0.0682 35 1 10.5912 2.4630 -2.1440 36 1 10.4867 3.7277 -3.3920 37 1 13.9901 3.8759 -2.2682 38 1 8.2796 1.7392 -3.0805 39 1 8.4149 3.1332 -4.1797 40 1 6.0286 2.4184 -3.7519 41 1 6.3578 4.1053 -3.2761 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602201093.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:18 Heat of formation + Delta-G solvation = 31.693866 kcal Electronic energy + Delta-G solvation = -23166.588644 eV Core-core repulsion = 19696.247962 eV Total energy + Delta-G solvation = -3470.340682 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.19262 -41.17056 -38.98019 -35.97950 -34.79470 -34.36183 -33.36994 -32.40945 -30.91200 -29.81700 -28.65331 -27.11556 -24.69301 -24.04073 -22.89280 -22.13176 -21.40498 -19.85906 -18.87472 -18.47794 -18.39339 -17.08150 -16.73239 -16.58886 -16.43186 -15.99381 -15.54983 -15.34495 -15.28405 -14.79003 -14.52353 -14.38495 -14.04645 -13.68080 -13.62395 -13.48408 -13.15375 -13.01434 -12.75065 -12.73154 -12.59287 -12.38440 -12.27485 -12.08999 -11.76361 -11.29063 -11.25339 -11.12529 -10.89767 -10.61152 -10.46901 -9.78453 -9.05152 -8.18650 -6.28954 0.54997 1.44830 1.45858 1.52136 1.58111 1.59243 1.73224 2.11597 2.42857 2.97440 3.14140 3.24521 3.48366 3.55298 3.86526 4.00573 4.05677 4.24993 4.26769 4.35108 4.38254 4.47928 4.56076 4.71616 4.73922 4.74732 4.85485 4.96553 5.04113 5.05816 5.21043 5.22782 5.24774 5.32360 5.44887 5.66166 6.03767 6.20282 6.22985 6.39734 6.56781 6.87640 7.04821 7.05338 7.41253 8.93046 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.036418 B = 0.002810 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.672730 B = 9963.240883 C =10249.571391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.286 3.714 3 N -0.566 5.566 4 C 0.237 3.763 5 C -0.046 4.046 6 C 0.524 3.476 7 O -0.583 6.583 8 N -0.608 5.608 9 C 0.117 3.883 10 C 0.047 3.953 11 N -0.538 5.538 12 C 0.207 3.793 13 C -0.518 4.518 14 H 0.073 0.927 15 C -0.002 4.002 16 N -0.938 5.938 17 Si 0.972 3.028 18 H -0.256 1.256 19 H -0.281 1.281 20 H -0.283 1.283 21 C 0.044 3.956 22 C 0.129 3.871 23 N -0.341 5.341 24 N -0.475 5.475 25 H 0.455 0.545 26 H 0.115 0.885 27 H 0.097 0.903 28 H 0.110 0.890 29 H 0.137 0.863 30 H 0.151 0.849 31 H 0.093 0.907 32 H 0.123 0.877 33 H 0.015 0.985 34 H 0.090 0.910 35 H -0.042 1.042 36 H 0.003 0.997 37 H 0.263 0.737 38 H 0.012 0.988 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.606 -6.410 8.345 26.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.008 3.992 3 N -0.297 5.297 4 C -0.046 4.046 5 C -0.087 4.087 6 C 0.312 3.688 7 O -0.464 6.464 8 N -0.341 5.341 9 C -0.005 4.005 10 C -0.082 4.082 11 N -0.263 5.263 12 C 0.081 3.919 13 C -0.556 4.556 14 H 0.091 0.909 15 C -0.200 4.200 16 N -0.579 5.579 17 Si 0.796 3.204 18 H -0.180 1.180 19 H -0.207 1.207 20 H -0.209 1.209 21 C -0.085 4.085 22 C 0.006 3.994 23 N -0.171 5.171 24 N -0.196 5.196 25 H 0.303 0.697 26 H 0.133 0.867 27 H 0.116 0.884 28 H 0.129 0.871 29 H 0.155 0.845 30 H 0.169 0.831 31 H 0.111 0.889 32 H 0.141 0.859 33 H 0.034 0.966 34 H 0.109 0.891 35 H -0.024 1.024 36 H 0.021 0.979 37 H 0.072 0.928 38 H 0.031 0.969 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -24.326 -6.248 7.788 26.295 hybrid contribution 1.212 -1.239 -0.091 1.736 sum -23.113 -7.487 7.698 25.486 Atomic orbital electron populations 1.20651 0.79898 1.06390 1.06284 1.25293 0.98364 0.81955 0.93566 1.70290 1.01457 1.31304 1.26636 1.23596 0.93415 0.90005 0.97577 1.20051 0.93993 1.00159 0.94526 1.20638 0.79244 0.77471 0.91440 1.90668 1.54496 1.53231 1.47970 1.48249 1.30958 1.46503 1.08349 1.22239 0.88682 1.00023 0.89588 1.22506 0.96365 0.97341 0.92008 1.62019 1.07703 1.54173 1.02408 1.19386 0.82868 0.93646 0.95981 1.21495 0.91485 1.21564 1.21059 0.90932 1.25966 0.98431 0.97979 0.97590 1.70110 1.06599 1.41717 1.39465 0.85291 0.78364 0.78320 0.78376 1.17973 1.20737 1.20872 1.22425 0.94291 0.94944 0.96813 1.21594 0.92820 1.01911 0.83084 1.77880 0.98987 1.12643 1.27588 1.47865 1.03192 1.11042 1.57461 0.69661 0.86708 0.88387 0.87123 0.84473 0.83128 0.88854 0.85922 0.96632 0.89138 1.02412 0.97864 0.92807 0.96930 0.90141 0.89772 0.89624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 10.51 71.24 0.75 0.26 16 2 C 0.29 5.30 8.24 138.22 1.14 6.44 16 3 N -0.57 -14.80 11.19 -179.73 -2.01 -16.81 16 4 C 0.24 6.55 6.63 138.63 0.92 7.47 16 5 C -0.05 -1.05 4.69 29.10 0.14 -0.91 16 6 C 0.52 15.86 7.70 87.66 0.68 16.54 16 7 O -0.58 -22.51 15.49 -3.03 -0.05 -22.55 16 8 N -0.61 -17.64 3.00 -816.98 -2.45 -20.09 16 9 C 0.12 2.91 6.53 86.50 0.57 3.47 16 10 C 0.05 1.63 5.47 86.54 0.47 2.10 16 11 N -0.54 -22.46 4.62 -898.79 -4.15 -26.61 16 12 C 0.21 10.90 4.72 85.56 0.40 11.30 16 13 C -0.52 -28.24 8.41 25.60 0.22 -28.03 16 14 H 0.07 3.77 7.13 -2.91 -0.02 3.75 16 15 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 16 N -0.94 -56.17 13.29 21.44 0.28 -55.88 16 17 Si 0.97 43.06 29.54 68.60 2.03 45.09 16 18 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 19 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 20 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 21 C 0.04 1.64 5.62 86.40 0.49 2.13 16 22 C 0.13 4.04 6.60 86.36 0.57 4.61 16 23 N -0.34 -9.45 12.80 -51.34 -0.66 -10.11 16 24 N -0.48 -8.99 7.45 -50.70 -0.38 -9.36 16 25 H 0.45 4.76 8.96 -213.10 -1.91 2.85 16 26 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 27 H 0.10 0.73 8.14 -2.38 -0.02 0.72 16 28 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 29 H 0.14 2.56 7.67 -2.38 -0.02 2.54 16 30 H 0.15 2.52 7.99 -2.39 -0.02 2.50 16 31 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.12 2.07 6.02 -2.39 -0.01 2.06 16 33 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.09 3.31 6.67 -2.39 -0.02 3.29 16 35 H -0.04 -2.43 8.12 -2.39 -0.02 -2.45 16 36 H 0.00 0.19 7.97 -2.38 -0.02 0.17 16 37 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 38 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.08 2.94 7.99 -2.38 -0.02 2.92 16 40 H 0.08 2.72 7.06 -2.39 -0.02 2.71 16 41 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -81.14 340.15 -1.45 -82.59 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -0.86 Total: 8.00 kcal Atomic # 6 Polarization: 18.95 SS G_CDS: 6.79 Total: 25.74 kcal Atomic # 7 Polarization: -129.50 SS G_CDS: -9.37 Total: -138.87 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.05 Total: -22.55 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -81.14 -1.45 -82.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602201093.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.284 kcal (2) G-P(sol) polarization free energy of solvation -81.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds