Wall clock time and date at job start Tue Mar 31 2020 03:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99874 * 2 1 4 4 H 1.48506 * 109.46730 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47357 * 300.00401 * 3 2 1 6 6 H 1.48501 * 109.46878 * 60.01099 * 3 2 1 7 7 C 1.37877 * 120.00056 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00312 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99848 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.47164 * 180.02562 * 9 7 2 11 11 C 1.46897 * 111.00364 * 170.00098 * 10 9 7 12 12 C 1.53230 * 109.34186 * 187.25323 * 11 10 9 13 13 N 1.47082 * 108.51951 * 306.16425 * 12 11 10 14 14 C 1.34777 * 120.87981 * 231.18555 * 13 12 11 15 15 O 1.21283 * 120.00463 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99675 * 179.72731 * 14 13 12 17 17 C 1.53004 * 109.47208 * 180.27843 * 16 14 13 18 18 N 1.46499 * 109.47198 * 179.97438 * 17 16 14 19 19 C 1.35313 * 125.86473 * 125.00019 * 18 17 16 20 20 C 1.35353 * 106.17122 * 179.97438 * 19 18 17 21 21 N 1.33769 * 106.49891 * 0.02562 * 20 19 18 22 22 N 1.28632 * 108.88718 * 359.73258 * 21 20 19 23 23 C 1.47079 * 118.23776 * 51.46441 * 13 12 11 24 24 C 1.46903 * 110.99692 * 294.29851 * 10 9 7 25 25 H 0.96995 * 119.99631 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.46978 * 60.00190 * 9 7 2 27 27 H 1.08997 * 109.46756 * 300.00162 * 9 7 2 28 28 H 1.09007 * 109.49363 * 67.28772 * 11 10 9 29 29 H 1.09006 * 109.48829 * 307.21036 * 11 10 9 30 30 H 1.09007 * 109.62838 * 186.45836 * 12 11 10 31 31 H 1.08995 * 109.63343 * 65.87824 * 12 11 10 32 32 H 1.09009 * 109.47352 * 300.27556 * 16 14 13 33 33 H 1.08998 * 109.47585 * 60.27844 * 16 14 13 34 34 H 1.09000 * 109.46887 * 300.00372 * 17 16 14 35 35 H 1.08998 * 109.46846 * 59.99549 * 17 16 14 36 36 H 1.07998 * 126.91607 * 0.02562 * 19 18 17 37 37 H 1.08003 * 126.75066 * 179.97438 * 20 19 18 38 38 H 1.08993 * 109.62875 * 68.24376 * 23 13 12 39 39 H 1.08998 * 109.63018 * 188.83153 * 23 13 12 40 40 H 1.09000 * 109.49258 * 292.70544 * 24 10 9 41 41 H 1.09002 * 109.49243 * 52.78589 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8906 2.3963 1.2127 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5212 -4.8935 0.2376 12 6 2.5637 -6.0031 0.4104 13 7 3.4614 -5.9862 -0.7546 14 6 3.7117 -7.1124 -1.4515 15 8 3.1936 -8.1579 -1.1208 16 6 4.6300 -7.0710 -2.6456 17 6 4.7372 -8.4703 -3.2553 18 7 5.6294 -8.4300 -4.4165 19 6 6.7246 -9.2027 -4.6020 20 6 7.2457 -8.8376 -5.7966 21 7 6.4546 -7.8717 -6.2769 22 7 5.5032 -7.6571 -5.4381 23 6 4.0837 -4.7090 -1.1351 24 6 2.9766 -3.6491 -1.2505 25 1 -0.4849 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6247 -2.5570 0.8897 28 1 0.8795 -5.1263 -0.6123 29 1 0.9160 -4.8191 1.1412 30 1 2.0631 -6.9694 0.4728 31 1 3.1394 -5.8265 1.3189 32 1 4.2295 -6.3809 -3.3883 33 1 5.6183 -6.7345 -2.3326 34 1 5.1375 -9.1604 -2.5127 35 1 3.7488 -8.8068 -3.5684 36 1 7.1057 -9.9592 -3.9321 37 1 8.1273 -9.2452 -6.2688 38 1 4.8026 -4.4104 -0.3723 39 1 4.5884 -4.8192 -2.0949 40 1 2.3147 -3.8993 -2.0796 41 1 3.4270 -2.6722 -1.4262 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602206220.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:53 Heat of formation + Delta-G solvation = 77.051855 kcal Electronic energy + Delta-G solvation = -23144.729581 eV Core-core repulsion = 19676.355768 eV Total energy + Delta-G solvation = -3468.373812 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.48668 -40.24439 -37.77228 -35.53501 -34.55621 -32.55533 -31.71348 -31.26966 -30.53941 -28.37380 -26.18997 -25.01900 -23.36495 -22.94206 -22.22085 -21.59003 -20.55847 -18.80418 -18.14597 -16.82541 -16.72716 -16.45312 -16.03272 -15.64837 -15.21497 -14.81847 -14.60552 -14.46851 -14.20623 -13.87493 -13.66518 -13.47035 -12.95525 -12.86266 -12.31788 -12.11687 -11.96957 -11.74499 -11.37370 -11.17760 -11.13133 -11.05321 -10.83130 -10.71433 -10.58038 -10.42262 -9.99693 -9.88238 -9.65636 -9.33012 -8.65152 -8.51365 -7.41869 -6.11023 -4.13414 1.32731 1.97883 2.34320 2.43879 2.96367 3.25966 3.33857 3.37385 4.02189 4.21295 4.25733 4.34667 4.40455 4.69591 4.73263 4.83355 4.94331 5.09366 5.15495 5.24077 5.28545 5.29115 5.40597 5.50468 5.54844 5.64521 5.75270 5.88876 5.90157 6.18748 6.26521 6.34681 6.37307 6.52213 7.14337 7.20903 7.33889 7.68274 7.94056 7.98283 8.04958 8.26184 8.40483 8.93888 9.51593 10.99821 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.020728 B = 0.003074 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.489201 B = 9107.244888 C =10117.567500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.511 4.511 8 H 0.064 0.936 9 C 0.193 3.807 10 N -0.536 5.536 11 C 0.040 3.960 12 C 0.118 3.882 13 N -0.602 5.602 14 C 0.521 3.479 15 O -0.554 6.554 16 C -0.155 4.155 17 C 0.132 3.868 18 N -0.290 5.290 19 C -0.049 4.049 20 C -0.055 4.055 21 N -0.273 5.273 22 N -0.083 5.083 23 C 0.106 3.894 24 C 0.049 3.951 25 H 0.262 0.738 26 H -0.008 1.008 27 H 0.032 0.968 28 H 0.027 0.973 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.113 0.887 33 H 0.102 0.898 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.191 0.809 37 H 0.189 0.811 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.027 0.973 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.452 -17.960 -4.665 22.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.549 4.549 8 H 0.083 0.917 9 C 0.069 3.931 10 N -0.261 5.261 11 C -0.089 4.089 12 C -0.004 4.004 13 N -0.334 5.334 14 C 0.308 3.692 15 O -0.433 6.433 16 C -0.196 4.196 17 C 0.011 3.989 18 N -0.084 5.084 19 C -0.200 4.200 20 C -0.212 4.212 21 N -0.139 5.139 22 N -0.063 5.063 23 C -0.017 4.017 24 C -0.080 4.080 25 H 0.071 0.929 26 H 0.010 0.990 27 H 0.050 0.950 28 H 0.045 0.955 29 H 0.101 0.899 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.132 0.868 33 H 0.121 0.879 34 H 0.133 0.867 35 H 0.128 0.872 36 H 0.208 0.792 37 H 0.206 0.794 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.045 0.955 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 11.483 -17.174 -4.736 21.195 hybrid contribution 0.406 0.063 0.004 0.411 sum 11.889 -17.110 -4.732 21.366 Atomic orbital electron populations 1.69965 1.06114 1.26833 1.50711 1.25002 0.94869 0.99416 0.95290 0.86438 0.80033 0.83346 0.77581 1.19614 1.21064 1.20974 1.21159 0.93481 0.89826 1.50450 0.91743 1.19736 0.89978 0.87130 0.96293 1.62094 1.28149 1.02745 1.33133 1.22412 0.94916 0.90512 1.01081 1.21807 0.91699 0.99670 0.87263 1.48220 1.46416 1.08554 1.30249 1.20091 0.81862 0.83589 0.83614 1.90698 1.52696 1.30063 1.69860 1.21903 1.01909 0.97969 0.97789 1.21860 0.94657 0.98781 0.83595 1.47599 1.19714 1.24924 1.16192 1.23740 0.91929 1.02495 1.01844 1.23651 1.03274 0.99163 0.95118 1.75148 1.01636 1.15005 1.22066 1.78346 1.19545 1.15061 0.93340 1.22196 0.96379 0.82508 1.00618 1.22416 0.95017 0.99048 0.91494 0.92863 0.99036 0.94981 0.95454 0.89917 0.89261 0.90721 0.86839 0.87941 0.86654 0.87235 0.79234 0.79374 0.90250 0.90093 0.95489 0.88287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.02 13.29 55.43 0.74 -25.28 16 2 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 3 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.51 -13.65 8.41 -34.44 -0.29 -13.94 16 8 H 0.06 1.69 7.13 -52.49 -0.37 1.31 16 9 C 0.19 4.80 4.72 -4.98 -0.02 4.77 16 10 N -0.54 -10.67 4.62 -235.47 -1.09 -11.76 16 11 C 0.04 0.68 5.62 -3.71 -0.02 0.66 16 12 C 0.12 1.67 6.60 -3.61 -0.02 1.65 16 13 N -0.60 -8.05 3.00 -172.18 -0.52 -8.56 16 14 C 0.52 6.43 7.71 -10.98 -0.08 6.35 16 15 O -0.55 -8.16 15.43 5.55 0.09 -8.08 16 16 C -0.16 -1.41 4.19 -27.88 -0.12 -1.53 16 17 C 0.13 1.07 5.74 -4.04 -0.02 1.04 16 18 N -0.29 -2.74 3.44 -61.26 -0.21 -2.95 16 19 C -0.05 -0.36 11.57 -17.05 -0.20 -0.55 16 20 C -0.05 -0.48 12.05 -17.74 -0.21 -0.69 16 21 N -0.27 -3.47 12.41 30.24 0.38 -3.09 16 22 N -0.08 -1.05 12.92 60.35 0.78 -0.27 16 23 C 0.11 1.37 6.54 -3.36 -0.02 1.35 16 24 C 0.05 0.85 5.47 -3.46 -0.02 0.84 16 25 H 0.26 7.17 8.31 -40.82 -0.34 6.84 16 26 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 16 27 H 0.03 0.85 7.97 -51.93 -0.41 0.44 16 28 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 1.36 7.99 -51.93 -0.41 0.95 16 30 H 0.09 1.24 7.06 -51.92 -0.37 0.88 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.11 1.10 7.65 -51.92 -0.40 0.70 16 33 H 0.10 0.80 7.99 -51.93 -0.41 0.38 16 34 H 0.12 0.71 8.03 -51.93 -0.42 0.30 16 35 H 0.11 0.94 8.10 -51.93 -0.42 0.52 16 36 H 0.19 0.60 8.06 -52.49 -0.42 0.17 16 37 H 0.19 0.97 8.06 -52.48 -0.42 0.55 16 38 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.08 0.84 6.01 -51.93 -0.31 0.52 16 40 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.10 1.84 6.67 -51.93 -0.35 1.49 16 LS Contribution 339.76 15.07 5.12 5.12 Total: -1.00 -33.18 339.76 -6.84 -40.02 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -5.97 Total: -2.46 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -1.13 Total: 1.39 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: 0.08 Total: -51.91 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: 0.09 Total: -8.08 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.18 -6.84 -40.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602206220.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.072 kcal (2) G-P(sol) polarization free energy of solvation -33.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds