Wall clock time and date at job start Tue Mar 31 2020 03:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.36605 * 126.58273 * 2 1 4 4 C 1.47523 * 125.76715 * 0.02759 * 3 2 1 5 5 O 1.21595 * 120.00014 * 353.93525 * 4 3 2 6 6 N 1.34773 * 120.00307 * 173.93630 * 4 3 2 7 7 C 1.47076 * 120.88290 * 183.62350 * 6 4 3 8 8 C 1.53708 * 108.27272 * 128.75661 * 7 6 4 9 9 N 1.46898 * 109.25486 * 54.08206 * 8 7 6 10 10 C 1.46897 * 110.99443 * 172.60656 * 9 8 7 11 11 C 1.50703 * 109.47372 * 294.30234 * 10 9 8 12 12 H 1.07997 * 119.99822 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00086 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00236 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00024 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46730 * 89.99803 * 15 13 11 17 17 H 1.48494 * 109.47281 * 209.99884 * 15 13 11 18 18 H 1.48497 * 109.47027 * 330.00427 * 15 13 11 19 19 C 1.46897 * 111.26778 * 296.75337 * 9 8 7 20 20 C 1.47084 * 120.87593 * 3.90285 * 6 4 3 21 21 N 1.34396 * 108.45987 * 180.02562 * 3 2 1 22 22 N 1.28759 * 109.52765 * 359.97438 * 21 3 2 23 23 N 1.34816 * 126.58313 * 179.69207 * 2 1 3 24 24 C 1.46500 * 126.59204 * 0.02562 * 23 2 1 25 25 H 1.08992 * 109.47580 * 89.99559 * 1 2 3 26 26 H 1.09000 * 109.47275 * 329.99463 * 1 2 3 27 27 H 1.09007 * 109.47127 * 209.99808 * 1 2 3 28 28 H 1.08999 * 109.62902 * 248.52171 * 7 6 4 29 29 H 1.08993 * 109.63046 * 9.10851 * 7 6 4 30 30 H 1.08996 * 109.64159 * 294.07486 * 8 7 6 31 31 H 1.08997 * 109.41251 * 173.94779 * 8 7 6 32 32 H 1.09007 * 109.47590 * 54.30041 * 10 9 8 33 33 H 1.08999 * 109.47417 * 174.30306 * 10 9 8 34 34 H 0.97002 * 120.00249 * 180.02562 * 14 13 11 35 35 H 1.08999 * 109.49767 * 303.14503 * 19 9 8 36 36 H 1.09005 * 109.50894 * 183.08316 * 19 9 8 37 37 H 1.08998 * 109.62882 * 350.89596 * 20 6 4 38 38 H 1.09003 * 109.62829 * 111.47658 * 20 6 4 39 39 H 1.09001 * 109.47212 * 89.99807 * 24 23 2 40 40 H 1.09001 * 109.47064 * 210.00003 * 24 23 2 41 41 H 1.08998 * 109.46918 * 329.99870 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5027 0.0006 5 8 0.6915 2.7646 -0.1101 6 7 2.7754 3.4968 0.1238 7 6 2.3448 4.9007 0.2062 8 6 3.0151 5.5391 1.4333 9 7 4.4681 5.3395 1.3503 10 6 5.1628 6.0831 2.4097 11 6 4.9833 7.5626 2.1855 12 1 4.4108 7.9151 1.3404 13 6 5.5510 8.4660 3.0588 14 7 6.2495 8.0368 4.0871 15 14 5.3291 10.2998 2.7805 16 1 4.1072 10.7632 3.4860 17 1 6.5112 11.0272 3.3082 18 1 5.1921 10.5668 1.3262 19 6 4.8133 3.9124 1.3957 20 6 4.2166 3.2068 0.1733 21 7 3.5983 0.6789 -0.0006 22 7 3.6299 -0.6083 -0.0004 23 7 2.3104 -1.0825 0.0058 24 6 1.8864 -2.4848 0.0128 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 0.8899 0.5139 27 1 -0.3634 -0.8901 0.5138 28 1 2.6476 5.4302 -0.6971 29 1 1.2612 4.9455 0.3145 30 1 2.6351 5.0730 2.3423 31 1 2.7950 6.6065 1.4520 32 1 4.7462 5.8094 3.3790 33 1 6.2249 5.8388 2.3886 34 1 6.6485 8.6724 4.7017 35 1 4.4084 3.4689 2.3053 36 1 5.8975 3.7997 1.3875 37 1 4.3709 2.1313 0.2598 38 1 4.6958 3.5766 -0.7332 39 1 1.7815 -2.8379 -1.0131 40 1 2.6329 -3.0876 0.5300 41 1 0.9292 -2.5723 0.5268 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602209264.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:41 Heat of formation + Delta-G solvation = 87.428299 kcal Electronic energy + Delta-G solvation = -23764.901368 eV Core-core repulsion = 20296.977512 eV Total energy + Delta-G solvation = -3467.923856 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.49785 -39.58528 -37.39734 -35.33794 -34.20380 -32.58662 -32.32088 -30.69763 -28.82348 -27.87110 -27.65371 -25.49325 -23.67595 -23.02262 -21.81011 -21.39361 -20.41701 -19.01264 -17.45549 -16.68119 -16.32746 -16.09243 -15.83791 -15.03072 -14.68316 -14.63109 -14.19930 -14.02962 -13.79481 -13.70180 -13.56424 -13.37542 -13.32975 -12.87600 -12.70585 -12.41554 -12.01969 -11.84791 -11.37500 -11.15580 -10.81019 -10.73265 -10.63774 -10.48995 -10.47069 -10.27780 -9.89026 -9.59868 -9.31818 -9.15720 -8.43707 -8.31981 -7.21611 -6.00626 -4.02165 0.91449 1.59704 1.77304 3.13875 3.32542 3.33868 3.40057 3.44570 3.97158 4.05200 4.32762 4.44410 4.49662 4.54720 4.79725 4.94836 4.98845 5.16376 5.28989 5.35683 5.39521 5.52151 5.60265 5.67862 5.78607 5.87082 5.96436 6.07404 6.14972 6.40328 6.49503 6.56474 6.63260 6.84999 7.31803 7.36257 7.57184 7.80248 7.82550 8.10111 8.20862 8.27657 8.56217 9.05386 9.62104 11.10241 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.034786 B = 0.003294 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.722375 B = 8499.336481 C = 9006.944849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.120 3.880 3 C -0.094 4.094 4 C 0.600 3.400 5 O -0.549 6.549 6 N -0.588 5.588 7 C 0.115 3.885 8 C 0.052 3.948 9 N -0.537 5.537 10 C 0.193 3.807 11 C -0.508 4.508 12 H 0.064 0.936 13 C 0.055 3.945 14 N -0.899 5.899 15 Si 0.898 3.102 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.272 1.272 19 C 0.044 3.956 20 C 0.077 3.923 21 N -0.199 5.199 22 N -0.070 5.070 23 N -0.365 5.365 24 C 0.087 3.913 25 H 0.092 0.908 26 H 0.111 0.889 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.024 0.976 31 H 0.097 0.903 32 H -0.010 1.010 33 H 0.032 0.968 34 H 0.261 0.739 35 H 0.023 0.977 36 H 0.080 0.920 37 H 0.136 0.864 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.323 -21.261 -8.453 25.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.017 4.017 3 C -0.233 4.233 4 C 0.386 3.614 5 O -0.428 6.428 6 N -0.319 5.319 7 C -0.007 4.007 8 C -0.077 4.077 9 N -0.262 5.262 10 C 0.068 3.932 11 C -0.546 4.546 12 H 0.082 0.918 13 C -0.146 4.146 14 N -0.538 5.538 15 Si 0.726 3.274 16 H -0.208 1.208 17 H -0.213 1.213 18 H -0.197 1.197 19 C -0.086 4.086 20 C -0.047 4.047 21 N -0.071 5.071 22 N -0.049 5.049 23 N -0.151 5.151 24 C -0.054 4.054 25 H 0.110 0.890 26 H 0.129 0.871 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.107 0.893 30 H 0.042 0.958 31 H 0.115 0.885 32 H 0.008 0.992 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.041 0.959 36 H 0.098 0.902 37 H 0.152 0.848 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.120 0.880 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.180 -21.320 -8.800 25.212 hybrid contribution -1.022 0.779 0.831 1.530 sum -11.202 -20.541 -7.970 24.717 Atomic orbital electron populations 1.20683 0.84605 1.05196 1.04634 1.21883 0.96227 0.86222 0.97417 1.21274 0.88774 0.95565 1.17732 1.16759 0.85263 0.82412 0.77000 1.90727 1.16153 1.83346 1.52546 1.48029 1.07519 1.06565 1.69767 1.22022 0.99852 0.79183 0.99631 1.22411 0.89079 1.01695 0.94503 1.62094 1.06358 1.06830 1.50919 1.19722 0.93768 0.93025 0.86657 1.21163 1.32686 0.90392 1.10381 0.91784 1.24995 0.95280 0.99203 0.95148 1.69961 1.34744 1.34509 1.14616 0.86500 0.77498 0.84948 0.78493 1.20760 1.21298 1.19722 1.22375 1.00439 0.90055 0.95693 1.22962 0.78292 1.04367 0.99036 1.74189 1.18669 1.03449 1.10831 1.82032 0.96051 1.03956 1.22844 1.50251 1.06479 1.07718 1.50638 1.22164 1.02436 0.76112 1.04665 0.88953 0.87091 0.90793 0.90693 0.89340 0.95816 0.88520 0.99208 0.95041 0.92938 0.95876 0.90158 0.84799 0.91073 0.89268 0.88039 0.88560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.69 9.52 36.00 0.34 -0.35 16 2 C 0.12 1.30 7.02 -81.88 -0.57 0.73 16 3 C -0.09 -1.35 6.78 -83.55 -0.57 -1.92 16 4 C 0.60 9.77 7.70 -12.48 -0.10 9.68 16 5 O -0.55 -9.41 14.27 5.28 0.08 -9.34 16 6 N -0.59 -9.98 3.00 -173.41 -0.52 -10.50 16 7 C 0.12 1.98 6.62 -3.36 -0.02 1.96 16 8 C 0.05 1.05 5.47 -3.46 -0.02 1.03 16 9 N -0.54 -11.85 4.62 -235.46 -1.09 -12.94 16 10 C 0.19 5.11 4.72 -4.98 -0.02 5.08 16 11 C -0.51 -14.28 8.41 -34.44 -0.29 -14.57 16 12 H 0.06 1.77 7.13 -52.49 -0.37 1.39 16 13 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 14 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 15 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 19 C 0.04 0.84 5.62 -3.70 -0.02 0.82 16 20 C 0.08 1.28 6.45 -3.60 -0.02 1.26 16 21 N -0.20 -2.94 8.65 32.85 0.28 -2.65 16 22 N -0.07 -0.92 13.78 60.35 0.83 -0.09 16 23 N -0.36 -3.49 4.03 -63.59 -0.26 -3.75 16 24 C 0.09 0.34 11.33 59.85 0.68 1.01 16 25 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.11 1.06 6.57 -51.93 -0.34 0.72 16 27 H 0.07 0.31 7.17 -51.92 -0.37 -0.06 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.09 1.45 7.08 -51.93 -0.37 1.08 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.10 2.03 6.67 -51.93 -0.35 1.68 16 32 H -0.01 -0.28 8.12 -51.93 -0.42 -0.70 16 33 H 0.03 0.88 7.97 -51.93 -0.41 0.47 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.08 1.49 7.99 -51.93 -0.41 1.07 16 37 H 0.14 2.14 3.73 -120.17 -0.45 1.69 16 38 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 39 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.10 0.14 7.15 -51.93 -0.37 -0.23 16 LS Contribution 332.48 15.07 5.01 5.01 Total: -1.00 -34.13 332.48 -6.63 -40.75 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -5.97 Total: -3.21 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: -0.71 Total: 6.19 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: -0.01 Total: -56.11 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.08 Total: -9.34 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.13 -6.63 -40.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602209264.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.180 kcal (2) G-P(sol) polarization free energy of solvation -34.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds