Wall clock time and date at job start Tue Mar 31 2020 03:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42894 * 114.00289 * 2 1 4 4 C 1.52997 * 109.47329 * 184.91865 * 3 2 1 5 5 N 1.46900 * 109.47207 * 60.06426 * 4 3 2 6 6 C 1.46892 * 111.00336 * 200.06225 * 5 4 3 7 7 C 1.50694 * 109.47445 * 66.04677 * 6 5 4 8 8 H 1.08008 * 120.00146 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00237 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99999 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00208 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47244 * 59.99740 * 11 9 7 13 13 H 1.48502 * 109.47170 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.47163 * 299.99784 * 11 9 7 15 15 C 1.46904 * 110.99916 * 76.10135 * 5 4 3 16 16 C 1.50695 * 109.47036 * 200.15808 * 15 5 4 17 17 O 1.21271 * 120.00314 * 6.43881 * 16 15 5 18 18 N 1.34778 * 119.99676 * 186.43646 * 16 15 5 19 19 C 1.39409 * 119.99754 * 181.90713 * 18 16 15 20 20 C 1.39037 * 119.69587 * 340.10240 * 19 18 16 21 21 C 1.38366 * 119.09901 * 180.02562 * 20 19 18 22 22 C 1.38836 * 118.49447 * 359.97438 * 21 20 19 23 23 C 1.38072 * 119.31334 * 0.25626 * 22 21 20 24 24 N 1.31937 * 120.84718 * 359.49864 * 23 22 21 25 25 H 1.08994 * 109.47439 * 184.92392 * 1 2 3 26 26 H 1.09000 * 109.46814 * 304.92422 * 1 2 3 27 27 H 1.09004 * 109.46826 * 64.91789 * 1 2 3 28 28 H 1.09008 * 109.46863 * 64.91968 * 3 2 1 29 29 H 1.08998 * 109.47134 * 304.92048 * 3 2 1 30 30 H 1.09004 * 109.46828 * 300.07222 * 4 3 2 31 31 H 1.08995 * 109.47437 * 180.02562 * 4 3 2 32 32 H 1.09001 * 109.47532 * 186.04642 * 6 5 4 33 33 H 1.09005 * 109.47202 * 306.04510 * 6 5 4 34 34 H 0.96997 * 119.99997 * 179.97438 * 10 9 7 35 35 H 1.08999 * 109.46540 * 80.16098 * 15 5 4 36 36 H 1.08998 * 109.46970 * 320.16287 * 15 5 4 37 37 H 0.96999 * 120.00407 * 1.90328 * 18 16 15 38 38 H 1.08000 * 120.45073 * 0.02562 * 20 19 18 39 39 H 1.07992 * 120.74992 * 180.02562 * 21 20 19 40 40 H 1.07997 * 120.34697 * 179.97438 * 22 21 20 41 41 H 1.08002 * 119.57659 * 179.74296 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5307 1.1867 -0.1237 5 7 3.8679 0.5019 -1.3788 6 6 5.2276 -0.0515 -1.3277 7 6 5.2855 -1.1473 -0.2949 8 1 4.4007 -1.4064 0.2678 9 6 6.4682 -1.8184 -0.0673 10 7 7.5458 -1.5026 -0.7520 11 14 6.5402 -3.1762 1.2136 12 1 5.5821 -4.2510 0.8500 13 1 7.9148 -3.7358 1.2651 14 1 6.1808 -2.6218 2.5435 15 6 3.7086 1.4021 -2.5288 16 6 3.5717 0.5874 -3.7891 17 8 3.4862 -0.6206 -3.7241 18 7 3.5443 1.2013 -4.9887 19 6 3.3777 0.4512 -6.1519 20 6 3.6514 -0.9119 -6.1376 21 6 3.4824 -1.6444 -7.2992 22 6 3.0430 -0.9856 -8.4396 23 6 2.7947 0.3714 -8.3830 24 7 2.9604 1.0432 -7.2597 25 1 -0.3634 -1.0238 0.0882 26 1 -0.3633 0.5883 0.8426 27 1 -0.3633 0.4357 -0.9308 28 1 1.7601 1.8145 0.9308 29 1 1.6207 1.8766 -0.8426 30 1 3.9201 0.6144 0.7183 31 1 3.9741 2.1824 -0.1232 32 1 5.4913 -0.4583 -2.3040 33 1 5.9311 0.7371 -1.0606 34 1 8.3780 -1.9745 -0.5917 35 1 4.5824 2.0490 -2.6075 36 1 2.8159 2.0122 -2.3917 37 1 3.6403 2.1650 -5.0427 38 1 3.9914 -1.3924 -5.2321 39 1 3.6867 -2.7046 -7.3181 40 1 2.9012 -1.5281 -9.3627 41 1 2.4568 0.8889 -9.2687 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602776997.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:07 Heat of formation + Delta-G solvation = -13.162640 kcal Electronic energy + Delta-G solvation = -23619.836162 eV Core-core repulsion = 20115.257604 eV Total energy + Delta-G solvation = -3504.578557 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.70761 -38.99847 -37.65639 -35.95473 -34.60066 -32.51079 -32.24094 -30.47445 -29.46318 -28.00516 -26.10233 -25.02361 -23.63207 -22.94249 -22.30015 -20.83266 -19.77237 -17.93688 -17.14832 -16.53496 -16.24925 -16.02012 -15.68553 -15.36493 -14.97190 -14.71874 -14.49764 -14.23825 -13.93629 -13.75210 -13.36288 -13.20398 -12.96783 -12.44085 -12.09781 -11.96856 -11.84479 -11.70053 -11.22914 -11.08277 -10.69200 -10.64825 -10.55966 -10.13660 -9.79854 -9.74353 -9.52636 -9.28943 -9.21106 -9.03341 -8.35020 -8.18340 -7.27525 -5.94196 -3.93095 1.21042 1.38795 2.88594 2.92047 3.41068 3.44316 3.49501 3.97774 4.24255 4.49542 4.63974 4.74251 4.91478 5.03034 5.18841 5.31191 5.34376 5.41683 5.43303 5.47978 5.53924 5.62221 5.69514 5.73450 5.80093 5.92679 5.99335 6.07239 6.10146 6.32186 6.47717 6.62393 6.99414 7.15712 7.26264 7.34391 7.65497 7.87097 8.08170 8.12509 8.18398 8.42197 8.59629 9.14816 9.69894 11.17203 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.012223 B = 0.004811 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.161563 B = 5818.502833 C = 7196.239701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.359 6.359 3 C 0.068 3.932 4 C 0.060 3.940 5 N -0.507 5.507 6 C 0.196 3.804 7 C -0.497 4.497 8 H 0.068 0.932 9 C 0.054 3.946 10 N -0.903 5.903 11 Si 0.898 3.102 12 H -0.276 1.276 13 H -0.290 1.290 14 H -0.278 1.278 15 C 0.040 3.960 16 C 0.516 3.484 17 O -0.468 6.468 18 N -0.664 5.664 19 C 0.359 3.641 20 C -0.187 4.187 21 C -0.058 4.058 22 C -0.207 4.207 23 C 0.118 3.882 24 N -0.523 5.523 25 H 0.080 0.920 26 H 0.031 0.969 27 H 0.032 0.968 28 H 0.043 0.957 29 H 0.035 0.965 30 H 0.102 0.898 31 H 0.039 0.961 32 H 0.035 0.965 33 H -0.011 1.011 34 H 0.260 0.740 35 H 0.060 0.940 36 H 0.093 0.907 37 H 0.412 0.588 38 H 0.177 0.823 39 H 0.135 0.865 40 H 0.131 0.869 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.775 7.799 -9.307 16.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.277 6.277 3 C -0.009 4.009 4 C -0.068 4.068 5 N -0.232 5.232 6 C 0.071 3.929 7 C -0.536 4.536 8 H 0.086 0.914 9 C -0.146 4.146 10 N -0.543 5.543 11 Si 0.726 3.274 12 H -0.202 1.202 13 H -0.216 1.216 14 H -0.203 1.203 15 C -0.092 4.092 16 C 0.302 3.698 17 O -0.337 6.337 18 N -0.312 5.312 19 C 0.129 3.871 20 C -0.209 4.209 21 C -0.084 4.084 22 C -0.228 4.228 23 C -0.039 4.039 24 N -0.239 5.239 25 H 0.099 0.901 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.120 0.880 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.006 0.994 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.111 0.889 37 H 0.247 0.753 38 H 0.194 0.806 39 H 0.153 0.847 40 H 0.149 0.851 41 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -11.016 7.192 -9.168 16.036 hybrid contribution 0.630 -0.153 0.462 0.796 sum -10.386 7.038 -8.707 15.271 Atomic orbital electron populations 1.22665 0.82934 1.02124 0.98821 1.88166 1.17655 1.26914 1.94951 1.22623 0.95039 0.84999 0.98240 1.22093 0.92349 0.97173 0.95154 1.61755 1.31855 1.30791 0.98781 1.19800 0.80555 0.93980 0.98552 1.21111 0.95648 1.17243 1.19577 0.91426 1.24957 0.95633 0.97401 0.96628 1.69952 1.00696 1.42204 1.41447 0.86564 0.76721 0.82383 0.81748 1.20157 1.21566 1.20340 1.21890 1.01993 0.94512 0.90835 1.21128 0.75542 0.89363 0.83723 1.90602 1.43776 1.13962 1.85380 1.43563 1.71996 1.11498 1.04133 1.18443 0.93345 0.89138 0.86184 1.22948 1.02279 0.93818 1.01867 1.21596 0.94447 1.00513 0.91869 1.21993 1.04979 0.96140 0.99679 1.22322 0.95679 0.91504 0.94386 1.67028 1.16322 1.41156 0.99370 0.90147 0.95037 0.94936 0.93927 0.94644 0.88005 0.94320 0.94667 0.99356 0.93054 0.92252 0.88913 0.75269 0.80603 0.84688 0.85125 0.82787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.55 16 2 O -0.36 -6.62 10.57 -35.23 -0.37 -6.99 16 3 C 0.07 1.06 6.10 37.16 0.23 1.29 16 4 C 0.06 1.10 5.20 -3.83 -0.02 1.09 16 5 N -0.51 -10.72 3.81 -237.53 -0.90 -11.63 16 6 C 0.20 5.08 4.37 -4.98 -0.02 5.05 16 7 C -0.50 -14.21 8.23 -34.44 -0.28 -14.49 16 8 H 0.07 1.96 7.32 -52.48 -0.38 1.58 16 9 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 10 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 11 Si 0.90 22.31 29.54 -169.99 -5.02 17.29 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 C 0.04 0.66 5.30 -4.98 -0.03 0.63 16 16 C 0.52 9.26 7.26 -10.99 -0.08 9.18 16 17 O -0.47 -10.39 12.27 5.56 0.07 -10.32 16 18 N -0.66 -9.89 5.42 -11.43 -0.06 -9.96 16 19 C 0.36 5.73 7.52 -154.70 -1.16 4.57 16 20 C -0.19 -3.10 8.88 -39.24 -0.35 -3.44 16 21 C -0.06 -0.77 10.17 -39.31 -0.40 -1.17 16 22 C -0.21 -2.32 10.11 -39.42 -0.40 -2.71 16 23 C 0.12 1.40 11.17 -17.57 -0.20 1.20 16 24 N -0.52 -7.56 10.39 -12.37 -0.13 -7.69 16 25 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.04 0.56 8.14 -51.92 -0.42 0.14 16 29 H 0.04 0.49 6.77 -51.93 -0.35 0.14 16 30 H 0.10 2.13 6.58 -51.93 -0.34 1.79 16 31 H 0.04 0.61 7.99 -51.93 -0.42 0.20 16 32 H 0.04 1.01 6.96 -51.93 -0.36 0.65 16 33 H -0.01 -0.30 8.12 -51.93 -0.42 -0.72 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.06 0.90 7.99 -51.93 -0.42 0.48 16 36 H 0.09 1.24 6.51 -51.93 -0.34 0.90 16 37 H 0.41 4.78 8.82 -40.82 -0.36 4.42 16 38 H 0.18 3.42 5.17 -52.89 -0.27 3.15 16 39 H 0.14 1.50 8.06 -52.49 -0.42 1.07 16 40 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 41 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 344.65 15.07 5.19 5.19 Total: -1.00 -35.00 344.65 -7.94 -42.94 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -5.76 Total: 3.40 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -1.70 Total: 4.21 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: -0.36 Total: -55.72 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.30 Total: -17.31 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.00 -7.94 -42.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602776997.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.777 kcal (2) G-P(sol) polarization free energy of solvation -34.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds