Wall clock time and date at job start Tue Mar 31 2020 03:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42894 * 114.00289 * 2 1 4 4 C 1.52997 * 109.47329 * 184.91865 * 3 2 1 5 5 N 1.46900 * 109.47207 * 60.06426 * 4 3 2 6 6 C 1.46892 * 111.00336 * 200.06225 * 5 4 3 7 7 C 1.50694 * 109.47445 * 66.04677 * 6 5 4 8 8 H 1.08008 * 120.00146 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00237 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99999 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00208 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47244 * 59.99740 * 11 9 7 13 13 H 1.48502 * 109.47170 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.47163 * 299.99784 * 11 9 7 15 15 C 1.46904 * 110.99916 * 76.10135 * 5 4 3 16 16 C 1.50695 * 109.47036 * 200.15808 * 15 5 4 17 17 O 1.21271 * 120.00314 * 6.43881 * 16 15 5 18 18 N 1.34778 * 119.99676 * 186.43646 * 16 15 5 19 19 C 1.39409 * 119.99754 * 181.90713 * 18 16 15 20 20 C 1.39037 * 119.69587 * 340.10240 * 19 18 16 21 21 C 1.38366 * 119.09901 * 180.02562 * 20 19 18 22 22 C 1.38836 * 118.49447 * 359.97438 * 21 20 19 23 23 C 1.38072 * 119.31334 * 0.25626 * 22 21 20 24 24 N 1.31937 * 120.84718 * 359.49864 * 23 22 21 25 25 H 1.08994 * 109.47439 * 184.92392 * 1 2 3 26 26 H 1.09000 * 109.46814 * 304.92422 * 1 2 3 27 27 H 1.09004 * 109.46826 * 64.91789 * 1 2 3 28 28 H 1.09008 * 109.46863 * 64.91968 * 3 2 1 29 29 H 1.08998 * 109.47134 * 304.92048 * 3 2 1 30 30 H 1.09004 * 109.46828 * 300.07222 * 4 3 2 31 31 H 1.08995 * 109.47437 * 180.02562 * 4 3 2 32 32 H 1.09001 * 109.47532 * 186.04642 * 6 5 4 33 33 H 1.09005 * 109.47202 * 306.04510 * 6 5 4 34 34 H 0.96997 * 119.99997 * 179.97438 * 10 9 7 35 35 H 1.08999 * 109.46540 * 80.16098 * 15 5 4 36 36 H 1.08998 * 109.46970 * 320.16287 * 15 5 4 37 37 H 0.96999 * 120.00407 * 1.90328 * 18 16 15 38 38 H 1.08000 * 120.45073 * 0.02562 * 20 19 18 39 39 H 1.07992 * 120.74992 * 180.02562 * 21 20 19 40 40 H 1.07997 * 120.34697 * 179.97438 * 22 21 20 41 41 H 1.08002 * 119.57659 * 179.74296 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5307 1.1867 -0.1237 5 7 3.8679 0.5019 -1.3788 6 6 5.2276 -0.0515 -1.3277 7 6 5.2855 -1.1473 -0.2949 8 1 4.4007 -1.4064 0.2678 9 6 6.4682 -1.8184 -0.0673 10 7 7.5458 -1.5026 -0.7520 11 14 6.5402 -3.1762 1.2136 12 1 5.5821 -4.2510 0.8500 13 1 7.9148 -3.7358 1.2651 14 1 6.1808 -2.6218 2.5435 15 6 3.7086 1.4021 -2.5288 16 6 3.5717 0.5874 -3.7891 17 8 3.4862 -0.6206 -3.7241 18 7 3.5443 1.2013 -4.9887 19 6 3.3777 0.4512 -6.1519 20 6 3.6514 -0.9119 -6.1376 21 6 3.4824 -1.6444 -7.2992 22 6 3.0430 -0.9856 -8.4396 23 6 2.7947 0.3714 -8.3830 24 7 2.9604 1.0432 -7.2597 25 1 -0.3634 -1.0238 0.0882 26 1 -0.3633 0.5883 0.8426 27 1 -0.3633 0.4357 -0.9308 28 1 1.7601 1.8145 0.9308 29 1 1.6207 1.8766 -0.8426 30 1 3.9201 0.6144 0.7183 31 1 3.9741 2.1824 -0.1232 32 1 5.4913 -0.4583 -2.3040 33 1 5.9311 0.7371 -1.0606 34 1 8.3780 -1.9745 -0.5917 35 1 4.5824 2.0490 -2.6075 36 1 2.8159 2.0122 -2.3917 37 1 3.6403 2.1650 -5.0427 38 1 3.9914 -1.3924 -5.2321 39 1 3.6867 -2.7046 -7.3181 40 1 2.9012 -1.5281 -9.3627 41 1 2.4568 0.8889 -9.2687 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602776997.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:06 Heat of formation + Delta-G solvation = -39.762750 kcal Electronic energy + Delta-G solvation = -23620.989629 eV Core-core repulsion = 20115.257604 eV Total energy + Delta-G solvation = -3505.732025 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.91978 -40.26271 -38.97610 -37.46675 -35.90238 -34.66541 -33.31510 -31.67613 -30.87806 -29.68169 -27.39274 -26.60120 -24.73268 -24.24682 -23.94938 -22.20729 -21.23406 -19.13878 -18.54487 -18.42183 -17.42683 -17.20316 -17.16474 -16.62919 -16.42686 -16.18952 -15.96566 -15.57165 -15.27729 -15.03149 -14.76382 -14.61838 -14.09638 -14.00666 -13.80919 -13.42501 -13.15726 -13.03268 -12.81868 -12.61129 -12.48319 -12.36083 -11.95480 -11.80890 -11.53913 -11.25933 -10.87983 -10.66250 -10.57491 -10.48017 -10.38809 -9.31067 -8.92071 -8.16708 -6.23393 0.12434 0.32566 1.39152 1.43676 1.51139 1.58803 1.69992 2.42810 2.90584 3.07022 3.16265 3.28250 3.62292 3.68869 4.03446 4.12293 4.15962 4.29254 4.32518 4.33633 4.38034 4.45094 4.57131 4.61060 4.62487 4.75064 4.89329 4.89873 5.04936 5.07783 5.20950 5.28278 5.32669 5.39058 5.69077 5.85198 6.06319 6.20423 6.32956 6.51424 6.67810 6.91588 7.01686 7.13815 7.44368 8.94318 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.012223 B = 0.004811 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.161563 B = 5818.502833 C = 7196.239701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.406 6.406 3 C 0.073 3.927 4 C 0.058 3.942 5 N -0.526 5.526 6 C 0.217 3.783 7 C -0.511 4.511 8 H 0.057 0.943 9 C 0.002 3.998 10 N -0.936 5.936 11 Si 0.963 3.037 12 H -0.278 1.278 13 H -0.281 1.281 14 H -0.264 1.264 15 C 0.041 3.959 16 C 0.513 3.487 17 O -0.520 6.520 18 N -0.650 5.650 19 C 0.336 3.664 20 C -0.221 4.221 21 C -0.063 4.063 22 C -0.191 4.191 23 C 0.118 3.882 24 N -0.530 5.530 25 H 0.080 0.920 26 H 0.056 0.944 27 H 0.042 0.958 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.066 0.934 32 H -0.003 1.003 33 H -0.029 1.029 34 H 0.262 0.738 35 H 0.078 0.922 36 H 0.134 0.866 37 H 0.427 0.573 38 H 0.139 0.861 39 H 0.151 0.849 40 H 0.173 0.827 41 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.487 8.991 -10.468 18.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.326 6.326 3 C -0.004 4.004 4 C -0.069 4.069 5 N -0.250 5.250 6 C 0.091 3.909 7 C -0.549 4.549 8 H 0.075 0.925 9 C -0.195 4.195 10 N -0.577 5.577 11 Si 0.788 3.212 12 H -0.203 1.203 13 H -0.207 1.207 14 H -0.188 1.188 15 C -0.091 4.091 16 C 0.301 3.699 17 O -0.393 6.393 18 N -0.298 5.298 19 C 0.107 3.893 20 C -0.244 4.244 21 C -0.089 4.089 22 C -0.211 4.211 23 C -0.039 4.039 24 N -0.245 5.245 25 H 0.098 0.902 26 H 0.075 0.925 27 H 0.060 0.940 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.015 0.985 33 H -0.012 1.012 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.152 0.848 37 H 0.265 0.735 38 H 0.156 0.844 39 H 0.169 0.831 40 H 0.190 0.810 41 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -12.750 8.443 -10.339 18.459 hybrid contribution 1.095 -0.500 0.657 1.372 sum -11.654 7.942 -9.682 17.107 Atomic orbital electron populations 1.22819 0.80711 1.02879 1.00386 1.88100 1.20300 1.28795 1.95360 1.22660 0.92542 0.84510 1.00699 1.22151 0.94878 0.97474 0.92438 1.61523 1.28469 1.33567 1.01459 1.19309 0.83110 0.92951 0.95527 1.21387 0.95354 1.18136 1.20052 0.92501 1.25816 0.95252 0.99766 0.98709 1.70072 1.01225 1.43467 1.42953 0.85536 0.76890 0.79182 0.79590 1.20317 1.20658 1.18844 1.22020 1.04566 0.93903 0.88577 1.21413 0.74759 0.88851 0.84887 1.90610 1.46393 1.16105 1.86230 1.43291 1.71062 1.12135 1.03331 1.18514 0.94734 0.89085 0.86953 1.22742 1.04841 0.94844 1.01987 1.21882 0.94040 1.01384 0.91634 1.22427 1.02432 0.96122 1.00122 1.23158 0.93993 0.92151 0.94637 1.67121 1.16467 1.41417 0.99539 0.90162 0.92501 0.93986 0.90982 0.92302 0.91513 0.91561 0.98461 1.01190 0.92904 0.90413 0.84833 0.73468 0.84383 0.83127 0.80954 0.78579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 11.01 113.37 1.25 1.98 16 2 O -0.41 -14.75 10.57 -148.98 -1.57 -16.33 16 3 C 0.07 2.12 6.10 71.98 0.44 2.56 16 4 C 0.06 2.11 5.20 86.30 0.45 2.56 16 5 N -0.53 -22.77 3.81 -905.40 -3.45 -26.22 16 6 C 0.22 11.86 4.37 85.56 0.37 12.24 16 7 C -0.51 -30.51 8.23 25.60 0.21 -30.30 16 8 H 0.06 3.45 7.32 -2.91 -0.02 3.43 16 9 C 0.00 0.11 5.46 84.65 0.46 0.57 16 10 N -0.94 -58.34 13.29 21.45 0.28 -58.05 16 11 Si 0.96 46.87 29.54 68.60 2.03 48.89 16 12 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 13 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 14 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 15 C 0.04 1.34 5.30 85.55 0.45 1.79 16 16 C 0.51 19.12 7.26 87.66 0.64 19.76 16 17 O -0.52 -24.76 12.27 -3.00 -0.04 -24.80 16 18 N -0.65 -19.64 5.42 -308.46 -1.67 -21.31 16 19 C 0.34 10.84 7.52 132.91 1.00 11.84 16 20 C -0.22 -7.70 8.88 22.49 0.20 -7.50 16 21 C -0.06 -1.65 10.17 22.44 0.23 -1.43 16 22 C -0.19 -3.68 10.11 22.37 0.23 -3.46 16 23 C 0.12 2.40 11.17 84.64 0.95 3.35 16 24 N -0.53 -14.47 10.39 -193.03 -2.01 -16.47 16 25 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 29 H 0.06 1.43 6.77 -2.39 -0.02 1.41 16 30 H 0.07 2.88 6.58 -2.38 -0.02 2.86 16 31 H 0.07 2.00 7.99 -2.39 -0.02 1.98 16 32 H 0.00 -0.17 6.96 -2.39 -0.02 -0.18 16 33 H -0.03 -1.67 8.12 -2.38 -0.02 -1.69 16 34 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 35 H 0.08 2.30 7.99 -2.39 -0.02 2.28 16 36 H 0.13 3.25 6.51 -2.39 -0.02 3.24 16 37 H 0.43 9.64 8.82 -92.71 -0.82 8.82 16 38 H 0.14 5.94 5.17 -9.25 -0.05 5.90 16 39 H 0.15 3.29 8.06 -2.91 -0.02 3.26 16 40 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 41 H 0.20 2.26 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -81.88 344.65 0.64 -81.24 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 0.19 Total: 19.09 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: 6.87 Total: 13.97 kcal Atomic # 7 Polarization: -115.22 SS G_CDS: -6.84 Total: -122.06 kcal Atomic # 8 Polarization: -39.52 SS G_CDS: -1.61 Total: -41.13 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.89 kcal Total: -81.88 0.64 -81.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602776997.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.474 kcal (2) G-P(sol) polarization free energy of solvation -81.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds