Wall clock time and date at job start Tue Mar 31 2020 03:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46506 * 120.00239 * 2 1 4 4 C 1.50703 * 109.46877 * 269.72094 * 3 2 1 5 5 O 1.21281 * 119.99990 * 0.02562 * 4 3 2 6 6 N 1.34772 * 120.00069 * 179.97438 * 4 3 2 7 7 C 1.46496 * 120.00214 * 180.02562 * 6 4 3 8 8 C 1.50697 * 109.47126 * 90.00035 * 7 6 4 9 9 H 1.08004 * 120.00054 * 0.02562 * 8 7 6 10 10 C 1.37882 * 120.00029 * 180.02562 * 8 7 6 11 11 N 1.31509 * 119.99890 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99932 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47384 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47209 * 120.00140 * 12 10 8 15 15 H 1.48498 * 109.46945 * 239.99711 * 12 10 8 16 16 C 1.46500 * 119.99760 * 0.02562 * 6 4 3 17 17 C 1.52992 * 109.47399 * 90.00015 * 16 6 4 18 18 C 1.47203 * 109.47359 * 180.02562 * 17 16 6 19 19 N 6.68580 * 130.89451 * 21.14592 * 2 1 3 20 20 C 1.34777 * 119.99828 * 179.71805 * 2 1 3 21 21 O 1.21284 * 119.99754 * 180.27842 * 20 2 1 22 22 C 1.50696 * 120.00137 * 0.28058 * 20 2 1 23 23 C 1.53001 * 117.49887 * 248.61985 * 22 20 2 24 24 C 1.52994 * 59.99933 * 252.50574 * 23 22 20 25 25 H 1.08998 * 109.46661 * 89.99886 * 1 2 3 26 26 H 1.08993 * 109.47575 * 210.00600 * 1 2 3 27 27 H 1.09001 * 109.46870 * 330.00556 * 1 2 3 28 28 H 1.09000 * 109.46803 * 29.71572 * 3 2 1 29 29 H 1.09000 * 109.47214 * 149.72366 * 3 2 1 30 30 H 1.09004 * 109.46974 * 209.99814 * 7 6 4 31 31 H 1.08998 * 109.47423 * 330.00108 * 7 6 4 32 32 H 0.96999 * 120.00110 * 180.02562 * 11 10 8 33 33 H 1.09001 * 109.47063 * 209.99832 * 16 6 4 34 34 H 1.09004 * 109.47264 * 329.99843 * 16 6 4 35 35 H 1.09001 * 109.46863 * 299.99939 * 17 16 6 36 36 H 1.08996 * 109.47344 * 59.99864 * 17 16 6 37 37 H 1.09004 * 115.54642 * 34.32831 * 22 20 2 38 38 H 1.09001 * 117.49733 * 0.02562 * 23 22 20 39 39 H 1.08997 * 117.49999 * 145.01700 * 23 22 20 40 40 H 1.09004 * 117.50553 * 252.50777 * 24 23 22 41 41 H 1.09012 * 117.51513 * 107.47863 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4547 1.7003 -1.4208 5 8 2.0641 1.0157 -2.3426 6 7 3.1179 2.8474 -1.6672 7 6 3.3674 3.2672 -3.0484 8 6 2.2223 4.1211 -3.5285 9 1 1.3919 4.3306 -2.8704 10 6 2.2347 4.6351 -4.8079 11 7 3.2460 4.3804 -5.6090 12 14 0.8156 5.6942 -5.4027 13 1 -0.1894 5.8301 -4.3179 14 1 1.3243 7.0379 -5.7781 15 1 0.1835 5.0561 -6.5853 16 6 3.5892 3.6746 -0.5537 17 6 5.0027 3.2417 -0.1594 18 6 5.4760 4.0724 0.9598 19 7 5.8420 4.7136 1.8232 20 6 2.1388 -1.1672 0.0057 21 8 3.3517 -1.1672 0.0108 22 6 1.3854 -2.4723 0.0058 23 6 1.4552 -3.3283 1.2720 24 6 2.2073 -3.7627 0.0124 25 1 -0.3632 0.0000 -1.0277 26 1 -0.3634 -0.8898 0.5139 27 1 -0.3633 0.8901 0.5138 28 1 1.6063 2.0296 0.5094 29 1 3.1478 1.1396 0.5181 30 1 4.2925 3.8420 -3.0919 31 1 3.4561 2.3871 -3.6852 32 1 3.2549 4.7422 -6.5089 33 1 3.6014 4.7211 -0.8583 34 1 2.9207 3.5519 0.2985 35 1 4.9905 2.1952 0.1451 36 1 5.6712 3.3644 -1.0115 37 1 0.4493 -2.4747 -0.5528 38 1 2.0459 -2.9473 2.1051 39 1 0.5650 -3.8940 1.5468 40 1 1.8120 -4.6142 -0.5415 41 1 3.2933 -3.6676 0.0163 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609136009.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:55 Heat of formation + Delta-G solvation = -9.494836 kcal Electronic energy + Delta-G solvation = -23589.634658 eV Core-core repulsion = 20085.215149 eV Total energy + Delta-G solvation = -3504.419510 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.29352 -38.96377 -36.86896 -36.29319 -35.43562 -35.01917 -32.89902 -30.82138 -29.47235 -27.07344 -26.48889 -24.09992 -23.89163 -22.60964 -22.34242 -19.23044 -18.51307 -17.72459 -17.38264 -16.79959 -16.49212 -16.20101 -15.37309 -15.18954 -14.80266 -14.57220 -14.35920 -14.21825 -13.69333 -13.49471 -13.01062 -12.86248 -12.66567 -12.51679 -12.41814 -12.29694 -12.18408 -11.85669 -11.69439 -11.54551 -11.28100 -10.97549 -10.83435 -10.76158 -10.65664 -10.60051 -10.20845 -9.79298 -9.70649 -9.44756 -8.48944 -8.42744 -7.84531 -6.09542 -4.14384 2.47707 2.76097 2.84855 2.91426 3.26444 3.28366 3.34854 3.37807 3.66721 3.77996 4.24055 4.40423 4.41476 4.64531 4.74252 4.94090 4.96542 5.05460 5.12747 5.15485 5.25387 5.26906 5.36924 5.39151 5.45818 5.55462 5.64862 5.76519 5.79160 5.84796 5.98487 6.07596 6.35192 6.94201 7.35182 7.37320 7.42856 7.60834 7.86244 8.16583 8.18285 8.27629 8.82930 8.97565 9.51023 10.98660 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.012034 B = 0.004779 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.218817 B = 5856.990516 C = 7437.376119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.595 5.595 3 C 0.092 3.908 4 C 0.493 3.507 5 O -0.523 6.523 6 N -0.596 5.596 7 C 0.245 3.755 8 C -0.528 4.528 9 H 0.058 0.942 10 C 0.062 3.938 11 N -0.893 5.893 12 Si 0.897 3.103 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.283 1.283 16 C 0.118 3.882 17 C -0.053 4.053 18 C 0.219 3.781 19 N -0.447 5.447 20 C 0.550 3.450 21 O -0.539 6.539 22 C -0.190 4.190 23 C -0.155 4.155 24 C -0.148 4.148 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.035 0.965 31 H 0.045 0.955 32 H 0.263 0.737 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.109 0.891 36 H 0.118 0.882 37 H 0.125 0.875 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.806 -10.645 13.872 18.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.326 5.326 3 C -0.035 4.035 4 C 0.278 3.722 5 O -0.399 6.399 6 N -0.329 5.329 7 C 0.126 3.874 8 C -0.566 4.566 9 H 0.076 0.924 10 C -0.140 4.140 11 N -0.531 5.531 12 Si 0.725 3.275 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.209 1.209 16 C -0.009 4.009 17 C -0.095 4.095 18 C -0.099 4.099 19 N -0.124 5.124 20 C 0.339 3.661 21 O -0.416 6.416 22 C -0.211 4.211 23 C -0.192 4.192 24 C -0.185 4.185 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.121 0.879 29 H 0.125 0.875 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.114 0.886 34 H 0.092 0.908 35 H 0.127 0.873 36 H 0.136 0.864 37 H 0.143 0.857 38 H 0.116 0.884 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.770 -10.009 14.453 17.980 hybrid contribution -1.020 0.608 -0.942 1.515 sum -4.790 -9.402 13.512 17.144 Atomic orbital electron populations 1.21851 0.78864 1.02814 1.02742 1.47244 1.07181 1.04912 1.73310 1.21521 0.99499 0.86111 0.96347 1.20773 0.79047 0.81415 0.90968 1.90683 1.50080 1.53210 1.45914 1.48216 1.54929 1.21033 1.08722 1.19347 0.96606 0.96224 0.75209 1.21440 1.05808 1.30878 0.98516 0.92361 1.24925 0.96123 0.96510 0.96464 1.69931 1.30442 1.45048 1.07728 0.86464 0.82313 0.79924 0.78824 1.19828 1.20966 1.20926 1.21311 0.91509 0.97614 0.90421 1.19929 0.99592 0.97764 0.92183 1.29100 0.93208 0.93603 0.94014 1.81197 1.09263 1.10197 1.11770 1.19582 0.87217 0.84250 0.75065 1.90672 1.13886 1.87178 1.49886 1.22184 1.02899 0.90766 1.05214 1.22924 1.03151 1.01720 0.91410 1.22949 1.00151 0.95413 1.00001 0.91781 0.90790 0.91021 0.87924 0.87512 0.94693 0.93651 0.92715 0.88601 0.90819 0.87334 0.86415 0.85710 0.88359 0.87920 0.87966 0.87402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.81 10.05 59.85 0.60 1.41 16 2 N -0.59 -8.08 2.36 -182.95 -0.43 -8.51 16 3 C 0.09 1.26 4.49 -5.19 -0.02 1.24 16 4 C 0.49 9.37 7.74 -10.99 -0.09 9.28 16 5 O -0.52 -12.50 16.01 5.56 0.09 -12.41 16 6 N -0.60 -11.12 2.46 -175.07 -0.43 -11.55 16 7 C 0.24 5.90 5.16 -5.20 -0.03 5.87 16 8 C -0.53 -14.05 9.39 -34.44 -0.32 -14.37 16 9 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 10 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 11 N -0.89 -25.63 13.29 55.43 0.74 -24.90 16 12 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 13 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 C 0.12 1.58 5.17 -4.05 -0.02 1.56 16 17 C -0.05 -0.60 6.03 -29.52 -0.18 -0.78 16 18 C 0.22 2.76 15.43 -20.76 -0.32 2.44 16 19 N -0.45 -6.75 18.54 42.15 0.78 -5.97 16 20 C 0.55 8.13 7.46 -10.99 -0.08 8.05 16 21 O -0.54 -9.74 15.84 5.55 0.09 -9.65 16 22 C -0.19 -2.07 4.79 -91.77 -0.44 -2.51 16 23 C -0.15 -1.28 10.23 -26.73 -0.27 -1.55 16 24 C -0.15 -1.46 10.04 -26.74 -0.27 -1.73 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.54 6.64 -51.93 -0.34 0.20 16 27 H 0.07 0.59 7.89 -51.93 -0.41 0.18 16 28 H 0.10 1.08 7.15 -51.93 -0.37 0.71 16 29 H 0.11 1.37 6.47 -51.93 -0.34 1.03 16 30 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 31 H 0.05 1.27 7.42 -51.93 -0.39 0.88 16 32 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.10 1.35 8.07 -51.93 -0.42 0.93 16 34 H 0.07 0.78 6.44 -51.93 -0.33 0.45 16 35 H 0.11 1.12 7.22 -51.93 -0.38 0.75 16 36 H 0.12 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.13 1.18 7.27 -51.93 -0.38 0.80 16 38 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.11 1.25 7.67 -51.92 -0.40 0.85 16 LS Contribution 357.92 15.07 5.39 5.39 Total: -1.00 -35.83 357.92 -6.16 -41.99 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -5.83 Total: -0.99 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: -1.54 Total: 10.51 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: 0.66 Total: -50.92 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: 0.18 Total: -22.06 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.83 -6.16 -41.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609136009.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.497 kcal (2) G-P(sol) polarization free energy of solvation -35.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds