Wall clock time and date at job start Tue Mar 31 2020 03:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46506 * 120.00239 * 2 1 4 4 C 1.50703 * 109.46877 * 269.72094 * 3 2 1 5 5 O 1.21281 * 119.99990 * 0.02562 * 4 3 2 6 6 N 1.34772 * 120.00069 * 179.97438 * 4 3 2 7 7 C 1.46496 * 120.00214 * 180.02562 * 6 4 3 8 8 C 1.50697 * 109.47126 * 90.00035 * 7 6 4 9 9 H 1.08004 * 120.00054 * 0.02562 * 8 7 6 10 10 C 1.37882 * 120.00029 * 180.02562 * 8 7 6 11 11 N 1.31509 * 119.99890 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99932 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47384 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47209 * 120.00140 * 12 10 8 15 15 H 1.48498 * 109.46945 * 239.99711 * 12 10 8 16 16 C 1.46500 * 119.99760 * 0.02562 * 6 4 3 17 17 C 1.52992 * 109.47399 * 90.00015 * 16 6 4 18 18 C 1.47203 * 109.47359 * 180.02562 * 17 16 6 19 19 N 6.68580 * 130.89451 * 21.14592 * 2 1 3 20 20 C 1.34777 * 119.99828 * 179.71805 * 2 1 3 21 21 O 1.21284 * 119.99754 * 180.27842 * 20 2 1 22 22 C 1.50696 * 120.00137 * 0.28058 * 20 2 1 23 23 C 1.53001 * 117.49887 * 248.61985 * 22 20 2 24 24 C 1.52994 * 59.99933 * 252.50574 * 23 22 20 25 25 H 1.08998 * 109.46661 * 89.99886 * 1 2 3 26 26 H 1.08993 * 109.47575 * 210.00600 * 1 2 3 27 27 H 1.09001 * 109.46870 * 330.00556 * 1 2 3 28 28 H 1.09000 * 109.46803 * 29.71572 * 3 2 1 29 29 H 1.09000 * 109.47214 * 149.72366 * 3 2 1 30 30 H 1.09004 * 109.46974 * 209.99814 * 7 6 4 31 31 H 1.08998 * 109.47423 * 330.00108 * 7 6 4 32 32 H 0.96999 * 120.00110 * 180.02562 * 11 10 8 33 33 H 1.09001 * 109.47063 * 209.99832 * 16 6 4 34 34 H 1.09004 * 109.47264 * 329.99843 * 16 6 4 35 35 H 1.09001 * 109.46863 * 299.99939 * 17 16 6 36 36 H 1.08996 * 109.47344 * 59.99864 * 17 16 6 37 37 H 1.09004 * 115.54642 * 34.32831 * 22 20 2 38 38 H 1.09001 * 117.49733 * 0.02562 * 23 22 20 39 39 H 1.08997 * 117.49999 * 145.01700 * 23 22 20 40 40 H 1.09004 * 117.50553 * 252.50777 * 24 23 22 41 41 H 1.09012 * 117.51513 * 107.47863 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4547 1.7003 -1.4208 5 8 2.0641 1.0157 -2.3426 6 7 3.1179 2.8474 -1.6672 7 6 3.3674 3.2672 -3.0484 8 6 2.2223 4.1211 -3.5285 9 1 1.3919 4.3306 -2.8704 10 6 2.2347 4.6351 -4.8079 11 7 3.2460 4.3804 -5.6090 12 14 0.8156 5.6942 -5.4027 13 1 -0.1894 5.8301 -4.3179 14 1 1.3243 7.0379 -5.7781 15 1 0.1835 5.0561 -6.5853 16 6 3.5892 3.6746 -0.5537 17 6 5.0027 3.2417 -0.1594 18 6 5.4760 4.0724 0.9598 19 7 5.8420 4.7136 1.8232 20 6 2.1388 -1.1672 0.0057 21 8 3.3517 -1.1672 0.0108 22 6 1.3854 -2.4723 0.0058 23 6 1.4552 -3.3283 1.2720 24 6 2.2073 -3.7627 0.0124 25 1 -0.3632 0.0000 -1.0277 26 1 -0.3634 -0.8898 0.5139 27 1 -0.3633 0.8901 0.5138 28 1 1.6063 2.0296 0.5094 29 1 3.1478 1.1396 0.5181 30 1 4.2925 3.8420 -3.0919 31 1 3.4561 2.3871 -3.6852 32 1 3.2549 4.7422 -6.5089 33 1 3.6014 4.7211 -0.8583 34 1 2.9207 3.5519 0.2985 35 1 4.9905 2.1952 0.1451 36 1 5.6712 3.3644 -1.0115 37 1 0.4493 -2.4747 -0.5528 38 1 2.0459 -2.9473 2.1051 39 1 0.5650 -3.8940 1.5468 40 1 1.8120 -4.6142 -0.5415 41 1 3.2933 -3.6676 0.0163 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609136009.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:54 Heat of formation + Delta-G solvation = -32.882645 kcal Electronic energy + Delta-G solvation = -23590.648830 eV Core-core repulsion = 20085.215149 eV Total energy + Delta-G solvation = -3505.433681 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.45296 -40.30994 -38.03382 -37.19650 -36.71847 -36.29739 -34.86358 -32.19938 -30.76674 -28.68493 -27.48474 -25.39411 -25.25398 -23.80793 -23.26465 -20.42312 -19.74232 -18.90435 -18.46945 -18.32001 -18.08441 -17.45977 -16.78067 -16.29336 -16.13512 -15.83690 -15.66567 -15.39240 -14.89008 -14.67196 -14.32950 -14.22584 -13.85225 -13.60161 -13.56140 -13.48938 -13.28230 -13.21158 -12.99362 -12.73646 -12.70464 -12.54397 -12.38403 -12.17412 -11.88584 -11.64691 -11.51331 -11.37645 -10.92512 -10.85542 -10.60159 -9.63550 -9.49758 -8.18062 -6.31060 1.39961 1.41183 1.42587 1.53082 1.65631 1.81125 1.86646 1.95176 2.34172 2.47445 2.94618 3.10089 3.14673 3.55762 3.75472 3.86669 4.01825 4.03744 4.07899 4.17036 4.31440 4.34425 4.37565 4.57276 4.71508 4.77374 4.80205 4.92188 4.99061 5.02718 5.05375 5.07570 5.26436 5.31140 5.42063 5.60305 5.86615 6.11607 6.34356 6.57196 6.70803 6.80354 7.14262 7.33249 7.49132 8.89354 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.012034 B = 0.004779 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.218817 B = 5856.990516 C = 7437.376119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.598 5.598 3 C 0.098 3.902 4 C 0.485 3.515 5 O -0.583 6.583 6 N -0.597 5.597 7 C 0.260 3.740 8 C -0.536 4.536 9 H 0.059 0.941 10 C 0.008 3.992 11 N -0.929 5.929 12 Si 0.963 3.037 13 H -0.263 1.263 14 H -0.274 1.274 15 H -0.286 1.286 16 C 0.114 3.886 17 C -0.041 4.041 18 C 0.247 3.753 19 N -0.484 5.484 20 C 0.537 3.463 21 O -0.585 6.585 22 C -0.206 4.206 23 C -0.124 4.124 24 C -0.160 4.160 25 H 0.042 0.958 26 H 0.104 0.896 27 H 0.095 0.905 28 H 0.146 0.854 29 H 0.120 0.880 30 H 0.032 0.968 31 H -0.004 1.004 32 H 0.265 0.735 33 H 0.090 0.910 34 H 0.113 0.887 35 H 0.125 0.875 36 H 0.117 0.883 37 H 0.141 0.859 38 H 0.094 0.906 39 H 0.137 0.863 40 H 0.123 0.877 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.806 -10.681 16.132 20.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.329 5.329 3 C -0.028 4.028 4 C 0.273 3.727 5 O -0.463 6.463 6 N -0.328 5.328 7 C 0.139 3.861 8 C -0.575 4.575 9 H 0.077 0.923 10 C -0.191 4.191 11 N -0.569 5.569 12 Si 0.788 3.212 13 H -0.187 1.187 14 H -0.200 1.200 15 H -0.213 1.213 16 C -0.011 4.011 17 C -0.082 4.082 18 C -0.070 4.070 19 N -0.162 5.162 20 C 0.327 3.673 21 O -0.465 6.465 22 C -0.226 4.226 23 C -0.161 4.161 24 C -0.197 4.197 25 H 0.060 0.940 26 H 0.123 0.877 27 H 0.114 0.886 28 H 0.163 0.837 29 H 0.137 0.863 30 H 0.050 0.950 31 H 0.014 0.986 32 H 0.074 0.926 33 H 0.109 0.891 34 H 0.131 0.869 35 H 0.143 0.857 36 H 0.135 0.865 37 H 0.159 0.841 38 H 0.112 0.888 39 H 0.155 0.845 40 H 0.141 0.859 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.789 -10.021 16.773 20.378 hybrid contribution -0.368 0.582 -1.663 1.800 sum -6.157 -9.439 15.110 18.850 Atomic orbital electron populations 1.22083 0.76774 1.05632 1.02176 1.47486 1.08618 1.04493 1.72274 1.21613 1.01294 0.87489 0.92447 1.21813 0.77589 0.80482 0.92811 1.90651 1.52450 1.54924 1.48277 1.48112 1.54947 1.21824 1.07945 1.18787 0.95910 0.93578 0.77850 1.21762 1.06276 1.30682 0.98758 0.92299 1.25797 0.98607 0.97912 0.96781 1.70053 1.32411 1.46352 1.08111 0.85439 0.79279 0.78327 0.78185 1.18704 1.19985 1.21251 1.21575 0.93317 0.96437 0.89752 1.19808 0.98276 0.98336 0.91751 1.29020 0.92140 0.92583 0.93270 1.81240 1.10458 1.11435 1.13114 1.20348 0.87066 0.85783 0.74070 1.90637 1.15868 1.87977 1.52036 1.22244 1.03262 0.89174 1.07965 1.23045 1.03553 0.99555 0.89940 1.23018 0.98954 0.95657 1.02097 0.93972 0.87718 0.88595 0.83699 0.86253 0.95011 0.98621 0.92634 0.89128 0.86935 0.85672 0.86483 0.84131 0.88757 0.84541 0.85889 0.89902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.33 10.05 127.77 1.28 2.61 16 2 N -0.60 -15.27 2.36 -851.13 -2.01 -17.28 16 3 C 0.10 2.49 4.49 85.63 0.38 2.87 16 4 C 0.49 18.41 7.74 87.66 0.68 19.08 16 5 O -0.58 -28.86 16.01 -3.03 -0.05 -28.91 16 6 N -0.60 -22.19 2.46 -826.18 -2.03 -24.22 16 7 C 0.26 12.95 5.16 85.63 0.44 13.40 16 8 C -0.54 -28.95 9.39 25.60 0.24 -28.71 16 9 H 0.06 3.10 7.81 -2.91 -0.02 3.08 16 10 C 0.01 0.43 5.46 84.66 0.46 0.90 16 11 N -0.93 -54.70 13.29 21.45 0.28 -54.42 16 12 Si 0.96 43.37 29.54 68.60 2.03 45.40 16 13 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 14 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 15 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 16 C 0.11 2.84 5.17 86.38 0.45 3.28 16 17 C -0.04 -0.85 6.03 28.79 0.17 -0.68 16 18 C 0.25 5.78 15.43 89.44 1.38 7.16 16 19 N -0.48 -13.91 18.54 20.01 0.37 -13.54 16 20 C 0.54 15.50 7.46 87.66 0.65 16.15 16 21 O -0.58 -21.38 15.84 -3.04 -0.05 -21.43 16 22 C -0.21 -4.16 4.79 -11.54 -0.06 -4.21 16 23 C -0.12 -1.70 10.23 30.59 0.31 -1.38 16 24 C -0.16 -2.98 10.04 30.59 0.31 -2.68 16 25 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.10 1.18 6.64 -2.39 -0.02 1.17 16 27 H 0.10 1.22 7.89 -2.39 -0.02 1.20 16 28 H 0.15 2.43 7.15 -2.39 -0.02 2.41 16 29 H 0.12 2.77 6.47 -2.39 -0.02 2.76 16 30 H 0.03 1.58 8.07 -2.38 -0.02 1.56 16 31 H 0.00 -0.26 7.42 -2.39 -0.02 -0.28 16 32 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 33 H 0.09 2.41 8.07 -2.39 -0.02 2.39 16 34 H 0.11 1.96 6.44 -2.39 -0.02 1.95 16 35 H 0.13 2.32 7.22 -2.39 -0.02 2.30 16 36 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 37 H 0.14 2.35 7.27 -2.39 -0.02 2.33 16 38 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.12 1.72 8.14 -2.38 -0.02 1.70 16 41 H 0.08 1.97 7.67 -2.38 -0.02 1.95 16 Total: -1.00 -82.64 357.92 6.30 -76.34 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 1.04 Total: 10.26 kcal Atomic # 6 Polarization: 21.08 SS G_CDS: 6.71 Total: 27.79 kcal Atomic # 7 Polarization: -106.07 SS G_CDS: -3.38 Total: -109.46 kcal Atomic # 8 Polarization: -50.24 SS G_CDS: -0.10 Total: -50.34 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -82.64 6.30 -76.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609136009.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.458 kcal (2) G-P(sol) polarization free energy of solvation -82.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds