Wall clock time and date at job start Tue Mar 31 2020 03:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47644 * 2 1 4 4 N 1.46499 * 109.47414 * 179.97438 * 3 2 1 5 5 C 1.34812 * 126.59360 * 125.27298 * 4 3 2 6 6 C 1.36597 * 106.84174 * 180.15200 * 5 4 3 7 7 C 1.47518 * 125.77464 * 179.89954 * 6 5 4 8 8 O 1.21599 * 119.99678 * 3.48373 * 7 6 5 9 9 N 1.34775 * 120.00322 * 183.48817 * 7 6 5 10 10 C 1.46964 * 120.59509 * 174.22421 * 9 7 6 11 11 C 1.53375 * 108.63098 * 235.20460 * 10 9 7 12 12 N 1.46967 * 108.63606 * 310.57346 * 11 10 9 13 13 C 1.36932 * 120.59208 * 235.20421 * 12 11 10 14 14 H 1.07998 * 120.00263 * 25.42738 * 13 12 11 15 15 C 1.38816 * 119.99716 * 205.14491 * 13 12 11 16 16 N 1.31618 * 120.00337 * 215.99453 * 15 13 12 17 17 Si 1.86798 * 119.99748 * 35.99949 * 15 13 12 18 18 H 1.48505 * 109.47346 * 95.71975 * 17 15 13 19 19 H 1.48506 * 109.47005 * 215.71900 * 17 15 13 20 20 H 1.48500 * 109.47485 * 335.71861 * 17 15 13 21 21 C 1.46961 * 118.81006 * 55.48268 * 12 11 10 22 22 C 1.46965 * 120.59200 * 354.20413 * 9 7 6 23 23 N 1.34399 * 108.45446 * 359.63458 * 6 5 4 24 24 N 1.28762 * 109.52634 * 0.22667 * 23 6 5 25 25 H 1.09002 * 109.47009 * 300.00409 * 1 2 3 26 26 H 1.09005 * 109.47264 * 59.99747 * 1 2 3 27 27 H 1.08997 * 109.47926 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46808 * 240.00105 * 2 1 3 29 29 H 1.09002 * 109.47097 * 120.00754 * 2 1 3 30 30 H 1.09002 * 109.47252 * 59.99739 * 3 2 1 31 31 H 1.09005 * 109.46996 * 300.00417 * 3 2 1 32 32 H 1.08002 * 126.58436 * 0.02562 * 5 4 3 33 33 H 1.08995 * 109.60911 * 115.46385 * 10 9 7 34 34 H 1.08994 * 109.75190 * 355.03149 * 10 9 7 35 35 H 1.09007 * 109.60880 * 190.83444 * 11 10 9 36 36 H 1.09002 * 109.61396 * 70.32236 * 11 10 9 37 37 H 0.96998 * 120.00126 * 180.02562 * 16 15 13 38 38 H 1.08997 * 109.61327 * 64.26483 * 21 12 11 39 39 H 1.09000 * 109.61170 * 184.77722 * 21 12 11 40 40 H 1.09002 * 109.60716 * 244.54171 * 22 9 7 41 41 H 1.09004 * 109.60838 * 5.04331 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4423 0.0006 5 6 4.3091 2.0672 -0.8828 6 6 5.5945 1.7978 -0.5073 7 6 6.8110 2.2771 -1.1905 8 8 6.7178 3.0285 -2.1421 9 7 8.0256 1.8821 -0.7602 10 6 9.2385 2.2481 -1.5051 11 6 10.0107 0.9669 -1.8437 12 7 10.1460 0.1630 -0.6208 13 6 11.3801 -0.2383 -0.1837 14 1 12.2588 0.3299 -0.4509 15 6 11.5010 -1.3722 0.6079 16 7 12.3992 -1.4110 1.5692 17 14 10.3891 -2.8430 0.3086 18 1 11.0892 -3.8246 -0.5584 19 1 10.0521 -3.4810 1.6066 20 1 9.1420 -2.3929 -0.3602 21 6 8.9327 -0.2076 0.1209 22 6 8.1609 1.0782 0.4626 23 7 5.5636 1.0270 0.5932 24 7 4.3405 0.7963 0.9229 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3635 -1.0276 -0.0005 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5140 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9969 2.6644 -1.7268 33 1 9.8614 2.8996 -0.8924 34 1 8.9641 2.7638 -2.4253 35 1 10.9995 1.2252 -2.2229 36 1 9.4645 0.3986 -2.5966 37 1 12.4839 -2.2035 2.1221 38 1 8.3115 -0.8576 -0.4952 39 1 9.2093 -0.7251 1.0395 40 1 8.7071 1.6465 1.2154 41 1 7.1721 0.8200 0.8418 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611236508.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:23 Heat of formation + Delta-G solvation = 88.773464 kcal Electronic energy + Delta-G solvation = -23829.063368 eV Core-core repulsion = 20361.197843 eV Total energy + Delta-G solvation = -3467.865525 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.33498 -40.81446 -38.57138 -36.97900 -35.63807 -33.80762 -33.42044 -32.49881 -31.58404 -28.96398 -27.99219 -25.80165 -24.84358 -24.22511 -23.66177 -22.52596 -21.97009 -20.52931 -19.11244 -18.13500 -17.60045 -17.21145 -17.07069 -16.74028 -16.24970 -16.11128 -15.87115 -15.64689 -15.22225 -14.99452 -14.73296 -14.48374 -14.18177 -14.01962 -13.66119 -13.60740 -13.20164 -12.99327 -12.87502 -12.70296 -12.39885 -12.33791 -12.16995 -11.93176 -11.77750 -11.54174 -11.33195 -11.28580 -10.86212 -10.67302 -10.38558 -9.84853 -8.89700 -8.22846 -5.38604 0.14729 0.55176 1.10302 1.34697 1.44108 1.51904 1.93975 2.19797 2.45141 2.89220 3.09938 3.31311 3.41918 3.68367 3.84097 3.94145 4.08668 4.15821 4.16770 4.23928 4.36808 4.38733 4.48371 4.51970 4.61578 4.61937 4.72659 4.79748 4.86177 4.99304 5.12393 5.14507 5.17846 5.30303 5.34050 5.49945 5.59845 5.84922 6.09620 6.36631 6.81720 6.88979 7.09255 7.62089 8.05060 8.95026 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.018971 B = 0.004273 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.593449 B = 6550.656343 C = 7610.764541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.137 4.137 3 C 0.111 3.889 4 N -0.345 5.345 5 C 0.117 3.883 6 C -0.123 4.123 7 C 0.599 3.401 8 O -0.569 6.569 9 N -0.589 5.589 10 C 0.104 3.896 11 C 0.132 3.868 12 N -0.615 5.615 13 C -0.261 4.261 14 H 0.057 0.943 15 C -0.013 4.013 16 N -0.929 5.929 17 Si 0.894 3.106 18 H -0.300 1.300 19 H -0.294 1.294 20 H -0.240 1.240 21 C 0.137 3.863 22 C 0.062 3.938 23 N -0.230 5.230 24 N -0.086 5.086 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.116 0.884 31 H 0.145 0.855 32 H 0.243 0.757 33 H 0.067 0.933 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.032 0.968 37 H 0.263 0.737 38 H 0.029 0.971 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.590 7.632 -5.333 29.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.175 4.175 3 C -0.007 4.007 4 N -0.130 5.130 5 C -0.041 4.041 6 C -0.262 4.262 7 C 0.387 3.613 8 O -0.449 6.449 9 N -0.319 5.319 10 C -0.020 4.020 11 C 0.006 3.994 12 N -0.340 5.340 13 C -0.390 4.390 14 H 0.075 0.925 15 C -0.210 4.210 16 N -0.572 5.572 17 Si 0.721 3.279 18 H -0.228 1.228 19 H -0.221 1.221 20 H -0.164 1.164 21 C 0.011 3.989 22 C -0.064 4.064 23 N -0.102 5.102 24 N -0.065 5.065 25 H 0.087 0.913 26 H 0.093 0.907 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.134 0.866 31 H 0.162 0.838 32 H 0.259 0.741 33 H 0.085 0.915 34 H 0.120 0.880 35 H 0.099 0.901 36 H 0.050 0.950 37 H 0.072 0.928 38 H 0.047 0.953 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -27.579 7.066 -4.438 28.814 hybrid contribution 0.442 -0.690 -0.537 0.980 sum -27.137 6.377 -4.975 28.316 Atomic orbital electron populations 1.21671 0.92135 1.03010 1.03408 1.21796 0.98304 0.94542 1.02878 1.22692 0.69699 1.00415 1.07929 1.50875 1.10143 1.33223 1.18717 1.23835 0.88484 0.95707 0.96041 1.21460 0.95268 1.09533 0.99973 1.17080 0.81973 0.79808 0.82444 1.90726 1.86704 1.37744 1.29726 1.47872 1.05904 1.51678 1.26490 1.22135 0.84996 0.97546 0.97313 1.21468 0.99375 0.90945 0.87567 1.44501 1.02389 1.61348 1.25718 1.18771 0.85791 1.06367 1.28077 0.92525 1.25638 0.98313 1.00289 0.96805 1.70171 1.40296 1.29286 1.17473 0.86702 0.81394 0.82250 0.77523 1.22849 1.22116 1.16355 1.21717 0.87194 0.94838 0.95149 1.23433 1.05507 0.92024 0.85392 1.74022 1.12891 1.11676 1.11631 1.81931 0.93602 1.18033 1.12959 0.91329 0.90718 0.92099 0.91955 0.92091 0.86633 0.83765 0.74056 0.91469 0.88002 0.90140 0.95042 0.92842 0.95280 0.92657 0.92513 0.83235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.63 9.91 71.98 0.71 0.08 16 2 C -0.14 -1.20 6.14 30.59 0.19 -1.01 16 3 C 0.11 0.75 6.54 86.38 0.56 1.32 16 4 N -0.34 -5.87 3.69 -347.10 -1.28 -7.15 16 5 C 0.12 2.16 11.27 83.85 0.95 3.10 16 6 C -0.12 -3.50 6.78 40.82 0.28 -3.22 16 7 C 0.60 20.19 7.68 86.69 0.67 20.86 16 8 O -0.57 -20.06 16.30 -4.03 -0.07 -20.13 16 9 N -0.59 -21.62 2.95 -820.93 -2.42 -24.04 16 10 C 0.10 3.69 6.58 86.42 0.57 4.26 16 11 C 0.13 5.30 6.67 86.42 0.58 5.88 16 12 N -0.62 -29.98 2.73 -697.34 -1.90 -31.88 16 13 C -0.26 -14.91 9.88 84.04 0.83 -14.08 16 14 H 0.06 3.46 8.05 -2.91 -0.02 3.44 16 15 C -0.01 -0.76 4.86 84.86 0.41 -0.34 16 16 N -0.93 -58.14 13.97 21.65 0.30 -57.84 16 17 Si 0.89 45.51 26.33 68.60 1.81 47.32 16 18 H -0.30 -15.47 7.11 99.48 0.71 -14.76 16 19 H -0.29 -14.94 7.11 99.48 0.71 -14.23 16 20 H -0.24 -11.50 4.78 99.48 0.48 -11.03 16 21 C 0.14 6.23 4.53 86.56 0.39 6.62 16 22 C 0.06 2.41 6.51 86.56 0.56 2.97 16 23 N -0.23 -7.14 8.63 -50.00 -0.43 -7.58 16 24 N -0.09 -2.26 13.65 37.02 0.51 -1.76 16 25 H 0.07 0.22 8.14 -2.39 -0.02 0.20 16 26 H 0.07 0.12 8.14 -2.38 -0.02 0.10 16 27 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.14 -0.08 8.08 -2.38 -0.02 -0.10 16 32 H 0.24 2.36 8.06 -2.91 -0.02 2.34 16 33 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.10 3.30 7.03 -2.39 -0.02 3.29 16 35 H 0.08 3.10 7.92 -2.38 -0.02 3.08 16 36 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 38 H 0.03 1.34 6.72 -2.39 -0.02 1.32 16 39 H 0.06 2.72 5.37 -2.39 -0.01 2.70 16 40 H 0.06 2.30 8.14 -2.39 -0.02 2.29 16 41 H 0.15 5.53 3.56 -109.51 -0.39 5.14 16 Total: -1.00 -75.76 330.98 3.63 -72.12 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: 0.42 Total: 4.48 kcal Atomic # 6 Polarization: 19.74 SS G_CDS: 6.70 Total: 26.44 kcal Atomic # 7 Polarization: -125.01 SS G_CDS: -5.23 Total: -130.24 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.07 Total: -20.13 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.81 Total: 47.32 kcal Total: -75.76 3.63 -72.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611236508.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.896 kcal (2) G-P(sol) polarization free energy of solvation -75.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds