Wall clock time and date at job start Tue Mar 31 2020 03:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42903 * 113.99984 * 2 1 4 4 C 1.53004 * 109.47454 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.46986 * 64.99600 * 4 3 2 6 6 C 1.46496 * 120.00628 * 270.00225 * 5 4 3 7 7 C 1.50699 * 109.47598 * 270.00465 * 6 5 4 8 8 H 1.08005 * 119.99628 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00538 * 179.97438 * 7 6 5 10 10 N 1.31511 * 119.99774 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00058 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.46761 * 60.00209 * 11 9 7 13 13 H 1.48496 * 109.46664 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47077 * 300.00223 * 11 9 7 15 15 C 1.34774 * 119.99828 * 90.00387 * 5 4 3 16 16 O 1.21279 * 120.00472 * 179.97438 * 15 5 4 17 17 C 1.50706 * 120.00020 * 0.02562 * 15 5 4 18 18 C 1.52997 * 109.47238 * 180.02562 * 17 15 5 19 19 C 1.50696 * 109.47055 * 179.97438 * 18 17 15 20 20 C 1.38396 * 119.99906 * 125.00029 * 19 18 17 21 21 N 1.32124 * 119.99712 * 179.97438 * 20 19 18 22 22 C 1.32160 * 119.99910 * 359.97438 * 21 20 19 23 23 C 1.38342 * 120.00077 * 359.97438 * 22 21 20 24 24 N 1.32123 * 120.00267 * 304.72376 * 19 18 17 25 25 H 1.08996 * 109.47283 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47304 * 300.00130 * 1 2 3 27 27 H 1.09002 * 109.47200 * 59.99688 * 1 2 3 28 28 H 1.09003 * 109.47458 * 60.00083 * 3 2 1 29 29 H 1.09002 * 109.47344 * 300.00334 * 3 2 1 30 30 H 1.09004 * 109.46898 * 305.00005 * 4 3 2 31 31 H 1.08993 * 109.47182 * 185.00344 * 4 3 2 32 32 H 1.09008 * 109.47096 * 29.99824 * 6 5 4 33 33 H 1.09003 * 109.47776 * 149.99700 * 6 5 4 34 34 H 0.97002 * 119.99965 * 179.97438 * 10 9 7 35 35 H 1.09001 * 109.46953 * 299.99667 * 17 15 5 36 36 H 1.09000 * 109.47318 * 59.99264 * 17 15 5 37 37 H 1.09001 * 109.46832 * 299.99686 * 18 17 15 38 38 H 1.09004 * 109.47261 * 59.99705 * 18 17 15 39 39 H 1.07997 * 120.00254 * 359.95184 * 20 19 18 40 40 H 1.08002 * 119.99439 * 180.02562 * 22 21 20 41 41 H 1.08006 * 119.99610 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.1052 -0.8919 -1.3428 7 6 5.5009 -1.2977 -0.9449 8 1 6.2197 -0.5458 -0.6544 9 6 5.8603 -2.6288 -0.9517 10 7 4.9852 -3.5444 -1.3060 11 14 7.5907 -3.1317 -0.4592 12 1 7.8545 -2.6960 0.9356 13 1 7.7219 -4.6080 -0.5505 14 1 8.5711 -2.4906 -1.3719 15 6 4.2614 1.3338 -2.3217 16 8 4.6263 0.8204 -3.3582 17 6 4.1287 2.8321 -2.2290 18 6 4.5097 3.4619 -3.5703 19 6 4.3764 4.9601 -3.4777 20 6 5.4523 5.7714 -3.7936 21 7 5.3352 7.0849 -3.7128 22 6 4.1906 7.6241 -3.3309 23 6 3.1149 6.8131 -3.0162 24 7 3.2309 5.4994 -3.1001 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.6886 1.8465 0.8900 29 1 1.6885 1.8465 -0.8900 30 1 3.8514 0.5683 0.8410 31 1 3.9784 2.1766 0.0890 32 1 3.3853 -1.3629 -0.6733 33 1 3.9119 -1.2114 -2.3669 34 1 5.2381 -4.4808 -1.3111 35 1 3.0982 3.0912 -1.9861 36 1 4.7912 3.2080 -1.4493 37 1 5.5402 3.2028 -3.8136 38 1 3.8468 3.0859 -4.3496 39 1 6.3876 5.3307 -4.1057 40 1 4.0949 8.6978 -3.2654 41 1 2.1794 7.2538 -2.7045 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619434685.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:18 Heat of formation + Delta-G solvation = -36.079256 kcal Electronic energy + Delta-G solvation = -23326.546264 eV Core-core repulsion = 19820.973968 eV Total energy + Delta-G solvation = -3505.572296 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.26134 -39.16176 -37.48521 -35.11449 -34.70763 -33.56790 -32.60501 -30.51673 -29.50220 -27.33960 -25.96934 -25.51078 -24.64881 -22.92104 -22.66565 -21.48487 -18.36612 -17.68131 -17.19789 -16.82952 -16.40696 -16.14005 -15.86836 -15.30505 -15.20176 -15.01614 -14.74564 -14.37713 -14.10702 -13.70935 -13.18911 -12.86771 -12.47690 -12.35391 -11.95471 -11.81501 -11.78092 -11.69785 -11.61980 -11.35889 -11.17787 -10.98725 -10.86491 -10.76319 -10.35176 -10.08374 -9.55301 -9.42279 -9.40050 -9.23667 -8.82709 -8.32647 -7.57842 -5.94018 -3.98260 0.57439 0.94050 3.36913 3.40988 3.41870 3.47710 3.48650 3.81392 3.97817 4.08298 4.09488 4.30673 4.51699 4.61736 4.92269 4.97301 5.21137 5.22522 5.28998 5.30616 5.37472 5.40029 5.47331 5.51854 5.59375 5.64672 5.66731 5.82889 5.89331 6.05651 6.09692 6.25732 6.26779 7.07792 7.28549 7.43695 7.59317 7.61372 7.66797 8.03690 8.35871 8.52443 8.99023 9.16008 9.65522 11.13960 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.014326 B = 0.004125 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.041726 B = 6786.114397 C = 8254.113662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.371 6.371 3 C 0.044 3.956 4 C 0.112 3.888 5 N -0.589 5.589 6 C 0.250 3.750 7 C -0.526 4.526 8 H 0.054 0.946 9 C 0.061 3.939 10 N -0.894 5.894 11 Si 0.896 3.104 12 H -0.278 1.278 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.503 3.497 16 O -0.542 6.542 17 C -0.133 4.133 18 C -0.052 4.052 19 C 0.092 3.908 20 C 0.052 3.948 21 N -0.438 5.438 22 C 0.034 3.966 23 C 0.053 3.947 24 N -0.436 5.436 25 H 0.084 0.916 26 H 0.034 0.966 27 H 0.036 0.964 28 H 0.050 0.950 29 H 0.046 0.954 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.045 0.955 33 H 0.039 0.961 34 H 0.262 0.738 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.171 0.829 40 H 0.167 0.833 41 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.956 19.848 1.028 21.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.289 6.289 3 C -0.034 4.034 4 C -0.013 4.013 5 N -0.320 5.320 6 C 0.131 3.869 7 C -0.565 4.565 8 H 0.073 0.927 9 C -0.141 4.141 10 N -0.533 5.533 11 Si 0.723 3.277 12 H -0.204 1.204 13 H -0.213 1.213 14 H -0.203 1.203 15 C 0.289 3.711 16 O -0.420 6.420 17 C -0.173 4.173 18 C -0.091 4.091 19 C -0.048 4.048 20 C -0.108 4.108 21 N -0.152 5.152 22 C -0.126 4.126 23 C -0.107 4.107 24 N -0.152 5.152 25 H 0.102 0.898 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.110 0.890 31 H 0.098 0.902 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.111 0.889 36 H 0.102 0.898 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.188 0.812 40 H 0.184 0.816 41 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -6.669 19.176 0.455 20.308 hybrid contribution 0.604 0.066 0.445 0.753 sum -6.065 19.242 0.900 20.195 Atomic orbital electron populations 1.22696 0.82064 1.02571 0.99113 1.88101 1.18713 1.26959 1.95137 1.23112 0.95327 0.85409 0.99576 1.21503 0.91219 0.98923 0.89629 1.48165 1.64087 1.09917 1.09791 1.19296 0.96632 0.72163 0.98834 1.21439 0.97494 0.92181 1.45387 0.92737 1.24913 0.97300 0.96431 0.95416 1.69938 1.34329 1.00976 1.48029 0.86605 0.84884 0.77288 0.78879 1.20350 1.21256 1.20286 1.20279 0.78340 0.88270 0.84163 1.90668 1.46919 1.75086 1.29376 1.21644 1.03738 0.93983 0.97975 1.20303 1.04578 0.85651 0.98588 1.22484 0.89767 0.98645 0.93886 1.23720 1.00132 0.89631 0.97303 1.68451 1.24650 1.12798 1.09295 1.23727 0.89809 1.02002 0.97033 1.23786 1.00252 0.89997 0.96647 1.68301 1.24358 1.12639 1.09907 0.89785 0.94723 0.94572 0.93165 0.93572 0.89041 0.90171 0.93699 0.94304 0.92815 0.88856 0.89756 0.88785 0.88662 0.81179 0.81603 0.81475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.37 -6.47 9.53 -35.23 -0.34 -6.81 16 3 C 0.04 0.63 6.28 37.16 0.23 0.87 16 4 C 0.11 1.83 5.62 -4.04 -0.02 1.81 16 5 N -0.59 -12.53 2.42 -175.06 -0.42 -12.95 16 6 C 0.25 6.70 4.98 -5.20 -0.03 6.68 16 7 C -0.53 -15.17 9.39 -34.44 -0.32 -15.49 16 8 H 0.05 1.55 7.81 -52.48 -0.41 1.14 16 9 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 10 N -0.89 -27.17 13.29 55.43 0.74 -26.43 16 11 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 14 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 15 C 0.50 10.24 7.67 -10.98 -0.08 10.16 16 16 O -0.54 -13.36 15.56 5.56 0.09 -13.28 16 17 C -0.13 -1.91 4.12 -27.88 -0.11 -2.03 16 18 C -0.05 -0.69 4.92 -27.89 -0.14 -0.83 16 19 C 0.09 1.09 6.17 -82.41 -0.51 0.58 16 20 C 0.05 0.57 10.85 -17.37 -0.19 0.38 16 21 N -0.44 -4.82 10.50 -13.05 -0.14 -4.95 16 22 C 0.03 0.29 11.22 -17.37 -0.19 0.09 16 23 C 0.05 0.46 11.22 -17.38 -0.20 0.27 16 24 N -0.44 -5.05 10.06 -9.29 -0.09 -5.15 16 25 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.64 7.30 -51.93 -0.38 0.26 16 30 H 0.09 1.60 8.07 -51.93 -0.42 1.18 16 31 H 0.08 1.03 6.44 -51.93 -0.33 0.70 16 32 H 0.05 1.26 7.12 -51.92 -0.37 0.89 16 33 H 0.04 1.18 7.42 -51.93 -0.39 0.80 16 34 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 35 H 0.09 1.24 7.09 -51.93 -0.37 0.87 16 36 H 0.08 1.08 7.40 -51.93 -0.38 0.70 16 37 H 0.09 1.22 7.85 -51.93 -0.41 0.81 16 38 H 0.10 1.35 8.10 -51.93 -0.42 0.93 16 39 H 0.17 1.50 7.96 -52.49 -0.42 1.08 16 40 H 0.17 0.85 8.06 -52.49 -0.42 0.42 16 41 H 0.17 0.88 8.06 -52.48 -0.42 0.46 16 LS Contribution 350.66 15.07 5.28 5.28 Total: -1.00 -36.17 350.66 -6.42 -42.58 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -5.97 Total: -1.15 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: -0.55 Total: 5.70 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: 0.08 Total: -49.48 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.25 Total: -20.08 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -36.17 -6.42 -42.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619434685.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.506 kcal (2) G-P(sol) polarization free energy of solvation -36.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds