Wall clock time and date at job start Tue Mar 31 2020 03:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00047 * 2 1 4 4 H 1.48494 * 109.47052 * 239.99926 * 3 2 1 5 5 H 1.48500 * 109.47055 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47106 * 119.99366 * 3 2 1 7 7 C 1.37875 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99720 * 175.14336 * 7 2 1 9 9 C 1.50694 * 120.00314 * 355.42420 * 7 2 1 10 10 C 1.52992 * 115.55114 * 274.92789 * 9 7 2 11 11 N 1.46495 * 109.47269 * 294.81128 * 10 9 7 12 12 C 1.34782 * 120.00258 * 184.79147 * 11 10 9 13 13 O 1.21582 * 119.99693 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00034 * 180.02562 * 12 11 10 15 15 C 1.46497 * 120.00194 * 180.02562 * 14 12 11 16 16 C 1.52996 * 109.47267 * 180.02562 * 15 14 12 17 17 C 1.53006 * 109.46865 * 180.02562 * 16 15 14 18 18 N 1.46507 * 109.46786 * 179.97438 * 17 16 15 19 19 C 1.34427 * 126.81898 * 125.00047 * 18 17 16 20 20 N 1.30826 * 108.07810 * 179.97438 * 19 18 17 21 21 C 1.33241 * 109.82900 * 359.97438 * 20 19 18 22 22 N 1.30720 * 108.94596 * 359.75516 * 21 20 19 23 23 C 1.53003 * 117.49968 * 129.25534 * 9 7 2 24 24 C 1.53006 * 117.49603 * 60.59599 * 9 7 2 25 25 H 0.97001 * 119.99960 * 5.00103 * 1 2 3 26 26 H 1.09001 * 109.47339 * 54.81686 * 10 9 7 27 27 H 1.09007 * 109.46904 * 174.81223 * 10 9 7 28 28 H 0.96999 * 120.00105 * 4.80424 * 11 10 9 29 29 H 0.97004 * 120.00199 * 0.02562 * 14 12 11 30 30 H 1.09007 * 109.47147 * 300.00790 * 15 14 12 31 31 H 1.09003 * 109.46836 * 59.99708 * 15 14 12 32 32 H 1.08997 * 109.47183 * 299.99542 * 16 15 14 33 33 H 1.09000 * 109.47163 * 60.00403 * 16 15 14 34 34 H 1.08996 * 109.47351 * 299.99838 * 17 16 15 35 35 H 1.09000 * 109.46911 * 60.00236 * 17 16 15 36 36 H 1.08001 * 125.96428 * 0.02562 * 19 18 17 37 37 H 1.07999 * 125.53053 * 179.97438 * 21 20 19 38 38 H 1.09003 * 117.50034 * 359.97438 * 23 9 7 39 39 H 1.09002 * 117.49971 * 145.02730 * 23 9 7 40 40 H 1.08996 * 117.49810 * 214.97781 * 24 9 7 41 41 H 1.08995 * 117.50078 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0044 -1.1940 0.0005 8 1 3.0816 -1.1957 -0.0787 9 6 1.2546 -2.4970 0.1052 10 6 0.9188 -2.9527 1.5266 11 7 2.1578 -3.2464 2.2508 12 6 2.1052 -3.7590 3.4962 13 8 1.0293 -3.9781 4.0184 14 7 3.2451 -4.0287 4.1627 15 6 3.1879 -4.5864 5.5162 16 6 4.6093 -4.7963 6.0419 17 6 4.5495 -5.3793 7.4552 18 7 5.9106 -5.5808 7.9583 19 6 6.4272 -5.0962 9.1008 20 7 7.6686 -5.4996 9.1883 21 6 7.9789 -6.2409 8.1256 22 7 6.9329 -6.3242 7.3461 23 6 1.5730 -3.5803 -0.9273 24 6 0.2453 -2.8218 -0.9979 25 1 -0.4850 0.8369 -0.0732 26 1 0.3749 -2.1616 2.0428 27 1 0.3013 -3.8500 1.4840 28 1 3.0162 -3.0718 1.8342 29 1 4.1035 -3.8536 3.7463 30 1 2.6567 -3.8961 6.1715 31 1 2.6637 -5.5419 5.4936 32 1 5.1408 -5.4865 5.3867 33 1 5.1331 -3.8406 6.0646 34 1 4.0179 -4.6896 8.1106 35 1 4.0259 -6.3351 7.4320 36 1 5.9078 -4.4817 9.8213 37 1 8.9380 -6.7016 7.9401 38 1 2.3246 -3.3504 -1.6826 39 1 1.5428 -4.6177 -0.5940 40 1 -0.6578 -3.3605 -0.7110 41 1 0.1233 -2.0928 -1.7990 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619525878.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:08 Heat of formation + Delta-G solvation = 79.408788 kcal Electronic energy + Delta-G solvation = -22307.449160 eV Core-core repulsion = 18839.177551 eV Total energy + Delta-G solvation = -3468.271608 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.36554 -39.49627 -36.97022 -36.24382 -34.11267 -33.28597 -31.97965 -31.54323 -30.94388 -26.94231 -25.77548 -24.83905 -22.74875 -22.30684 -21.51175 -21.18653 -20.29373 -19.40675 -17.75716 -17.70092 -16.46878 -16.24263 -15.71288 -15.62565 -15.09376 -14.80620 -14.59512 -14.35621 -14.02976 -13.87434 -13.46511 -13.10261 -13.00347 -12.64391 -12.19519 -11.98473 -11.82583 -11.59626 -11.30890 -10.99017 -10.97552 -10.56596 -10.34963 -10.24812 -10.14055 -10.06343 -9.78946 -9.48725 -9.06283 -8.94572 -8.49998 -8.26095 -8.02596 -6.08982 -4.18943 1.29151 1.92439 2.64478 3.10965 3.24787 3.31010 3.31995 3.72260 3.98651 4.03030 4.32779 4.41160 4.47763 4.65810 4.76975 4.86354 4.92327 5.11966 5.18815 5.35595 5.40049 5.71603 5.80716 5.89343 6.02094 6.08871 6.33669 6.42416 6.46419 6.57246 6.66183 6.69867 6.82601 7.11141 7.27125 7.39426 7.41866 7.58416 7.73888 7.79194 8.32473 8.59276 8.82093 9.13013 9.48091 10.98168 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.020661 B = 0.002595 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.863381 B =10786.167797 C =11390.231547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.073 3.927 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.501 4.501 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.182 3.818 11 N -0.720 5.720 12 C 0.698 3.302 13 O -0.604 6.604 14 N -0.755 5.755 15 C 0.146 3.854 16 C -0.143 4.143 17 C 0.133 3.867 18 N -0.377 5.377 19 C 0.254 3.746 20 N -0.550 5.550 21 C 0.196 3.804 22 N -0.316 5.316 23 C -0.211 4.211 24 C -0.142 4.142 25 H 0.262 0.738 26 H 0.065 0.935 27 H 0.038 0.962 28 H 0.397 0.603 29 H 0.395 0.605 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.219 0.781 37 H 0.216 0.784 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.626 -9.653 14.284 20.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.131 4.131 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.538 4.538 8 H 0.077 0.923 9 C 0.023 3.977 10 C 0.058 3.942 11 N -0.372 5.372 12 C 0.398 3.602 13 O -0.484 6.484 14 N -0.412 5.412 15 C 0.020 3.980 16 C -0.182 4.182 17 C 0.010 3.990 18 N -0.168 5.168 19 C -0.043 4.043 20 N -0.278 5.278 21 C -0.107 4.107 22 N -0.144 5.144 23 C -0.248 4.248 24 C -0.180 4.180 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.056 0.944 28 H 0.230 0.770 29 H 0.228 0.772 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.126 0.874 35 H 0.113 0.887 36 H 0.235 0.765 37 H 0.233 0.767 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.533 -10.022 14.372 19.947 hybrid contribution 1.025 1.299 -0.363 1.695 sum 10.558 -8.723 14.010 19.592 Atomic orbital electron populations 1.69976 1.05867 1.26988 1.48201 1.24987 0.94827 0.98942 0.94327 0.86686 0.79647 0.83211 0.78582 1.20305 1.21263 1.20213 1.20303 0.92551 0.88625 1.52340 0.92325 1.19042 0.99402 0.93261 0.85955 1.20865 0.83219 0.97722 0.92384 1.45164 1.11349 1.66542 1.14142 1.16021 0.83788 0.78766 0.81639 1.90871 1.27835 1.60665 1.68995 1.45013 1.07894 1.71191 1.17123 1.20895 0.94754 0.99205 0.83153 1.22045 0.98097 1.02693 0.95372 1.21763 0.77453 1.03250 0.96518 1.50600 1.11884 1.37434 1.16909 1.26119 0.90915 0.97434 0.89828 1.70547 1.13164 1.18073 1.25970 1.26036 0.98890 0.97104 0.88697 1.78066 0.97224 1.17037 1.22092 1.23016 1.00700 0.95603 1.05494 1.22469 0.90809 1.01309 1.03406 0.92795 0.91702 0.94363 0.76953 0.77170 0.91548 0.91516 0.89620 0.90528 0.87436 0.88675 0.76463 0.76739 0.90442 0.91724 0.91782 0.89504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.08 12.65 55.43 0.70 -23.38 16 2 C 0.07 1.93 5.43 -17.82 -0.10 1.83 16 3 Si 0.89 20.40 29.54 -169.99 -5.02 15.37 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.50 -12.74 8.59 -34.44 -0.30 -13.04 16 8 H 0.06 1.46 7.82 -52.48 -0.41 1.05 16 9 C 0.02 0.56 1.47 -155.66 -0.23 0.33 16 10 C 0.18 4.10 5.50 -4.05 -0.02 4.08 16 11 N -0.72 -13.78 5.48 -65.23 -0.36 -14.14 16 12 C 0.70 12.87 8.57 -86.91 -0.74 12.13 16 13 O -0.60 -13.44 16.34 5.29 0.09 -13.35 16 14 N -0.75 -9.90 5.56 -65.22 -0.36 -10.27 16 15 C 0.15 1.48 5.67 -4.05 -0.02 1.46 16 16 C -0.14 -1.06 5.55 -26.73 -0.15 -1.21 16 17 C 0.13 0.76 6.55 -4.04 -0.03 0.73 16 18 N -0.38 -3.04 3.69 -62.63 -0.23 -3.27 16 19 C 0.25 1.85 12.63 -90.66 -1.14 0.70 16 20 N -0.55 -5.36 11.19 -15.83 -0.18 -5.53 16 21 C 0.20 1.79 13.03 -91.81 -1.20 0.60 16 22 N -0.32 -3.25 12.58 29.29 0.37 -2.88 16 23 C -0.21 -4.37 9.96 -26.69 -0.27 -4.64 16 24 C -0.14 -3.24 9.14 -26.69 -0.24 -3.48 16 25 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 26 H 0.06 1.67 8.14 -51.93 -0.42 1.25 16 27 H 0.04 0.86 8.09 -51.92 -0.42 0.44 16 28 H 0.40 6.91 8.34 -40.82 -0.34 6.57 16 29 H 0.39 4.26 8.49 -40.82 -0.35 3.92 16 30 H 0.07 0.70 8.14 -51.92 -0.42 0.27 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.11 0.32 8.09 -51.93 -0.42 -0.10 16 35 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.22 0.61 8.06 -52.49 -0.42 0.19 16 37 H 0.22 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 41 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 LS Contribution 357.12 15.07 5.38 5.38 Total: -1.00 -33.84 357.12 -10.20 -44.04 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -6.15 Total: 8.53 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -4.44 Total: -0.50 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: -0.06 Total: -59.47 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.09 Total: -13.35 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.84 -10.20 -44.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619525878.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.450 kcal (2) G-P(sol) polarization free energy of solvation -33.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds