Wall clock time and date at job start Tue Mar 31 2020 03:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 113.99959 * 2 1 4 4 C 1.53006 * 109.47054 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46986 * 64.99687 * 4 3 2 6 6 C 1.36953 * 120.00192 * 264.10340 * 5 4 3 7 7 H 1.07998 * 119.99522 * 137.40432 * 6 5 4 8 8 C 1.38986 * 119.99935 * 317.41275 * 6 5 4 9 9 N 1.31407 * 119.99738 * 347.26326 * 8 6 5 10 10 Si 1.86802 * 119.99835 * 167.26866 * 8 6 5 11 11 H 1.48500 * 109.47048 * 59.99329 * 10 8 6 12 12 H 1.48495 * 109.46945 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.46821 * 299.99734 * 10 8 6 14 14 C 1.34776 * 119.99730 * 84.11321 * 5 4 3 15 15 O 1.21653 * 120.00107 * 5.81844 * 14 5 4 16 16 C 1.47237 * 119.99760 * 185.82202 * 14 5 4 17 17 C 1.36674 * 126.19972 * 174.76556 * 16 14 5 18 18 N 1.35418 * 106.67576 * 179.97438 * 17 16 14 19 19 C 1.36386 * 107.77094 * 0.04483 * 18 17 16 20 20 N 1.29730 * 108.95158 * 359.96428 * 19 18 17 21 21 C 1.51106 * 123.82784 * 179.84288 * 19 18 17 22 22 C 1.53394 * 108.23088 * 344.10727 * 21 19 18 23 23 C 1.53137 * 109.26023 * 48.93804 * 22 21 19 24 24 C 1.46559 * 127.54475 * 180.10947 * 18 17 16 25 25 H 1.09005 * 109.47184 * 60.00247 * 1 2 3 26 26 H 1.09005 * 109.46975 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47185 * 300.00078 * 1 2 3 28 28 H 1.09000 * 109.47065 * 59.99832 * 3 2 1 29 29 H 1.08997 * 109.46716 * 299.99603 * 3 2 1 30 30 H 1.09001 * 109.46595 * 304.99715 * 4 3 2 31 31 H 1.08999 * 109.47071 * 184.99963 * 4 3 2 32 32 H 0.97003 * 119.99468 * 180.02562 * 9 8 6 33 33 H 1.07997 * 126.66053 * 359.95238 * 17 16 14 34 34 H 1.08994 * 109.72333 * 224.41151 * 21 19 18 35 35 H 1.08999 * 109.71719 * 103.79790 * 21 19 18 36 36 H 1.08998 * 109.50207 * 168.86889 * 22 21 19 37 37 H 1.09002 * 109.50460 * 288.99862 * 22 21 19 38 38 H 1.08993 * 109.46721 * 50.22329 * 23 22 21 39 39 H 1.09000 * 109.45697 * 170.19183 * 23 22 21 40 40 H 1.09009 * 109.58300 * 43.00871 * 24 18 17 41 41 H 1.08992 * 109.59146 * 282.58592 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9756 0.5643 -1.2527 6 6 4.2131 -0.7835 -1.3028 7 1 3.8731 -1.3605 -2.1500 8 6 4.8914 -1.4087 -0.2632 9 7 5.5206 -0.6883 0.6378 10 14 4.9086 -3.2730 -0.1470 11 1 5.5282 -3.8396 -1.3718 12 1 5.6952 -3.6875 1.0424 13 1 3.5165 -3.7738 -0.0195 14 6 4.1471 1.3202 -2.3553 15 8 4.0397 2.5300 -2.2862 16 6 4.4644 0.6817 -3.6435 17 6 4.5648 1.3103 -4.8530 18 7 4.8706 0.3552 -5.7631 19 6 4.9517 -0.8364 -5.1047 20 7 4.7101 -0.6394 -3.8454 21 6 5.2721 -2.1500 -5.7793 22 6 5.0837 -1.9717 -7.2911 23 6 5.8141 -0.7046 -7.7452 24 6 5.0849 0.5291 -7.2024 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.6885 1.8464 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 3.8514 0.5682 0.8410 31 1 3.9785 2.1765 0.0889 32 1 5.9943 -1.1247 1.3632 33 1 4.4268 2.3639 -5.0455 34 1 4.5986 -2.9251 -5.4137 35 1 6.3041 -2.4299 -5.5679 36 1 5.4946 -2.8356 -7.8135 37 1 4.0213 -1.8802 -7.5172 38 1 6.8358 -0.7187 -7.3661 39 1 5.8315 -0.6662 -8.8344 40 1 5.6913 1.4180 -7.3768 41 1 4.1236 0.6359 -7.7048 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697208034.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:30 Heat of formation + Delta-G solvation = -6.995852 kcal Electronic energy + Delta-G solvation = -24455.161377 eV Core-core repulsion = 20950.850231 eV Total energy + Delta-G solvation = -3504.311145 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.65961 -38.29592 -36.84946 -36.12557 -34.45003 -32.94920 -31.26764 -29.92658 -28.68866 -28.06461 -25.72988 -24.64597 -24.13531 -22.64303 -21.94242 -20.78245 -18.78652 -18.68227 -17.26878 -16.22908 -15.84477 -15.66992 -15.18206 -15.06127 -14.36699 -14.23965 -14.16651 -14.10216 -13.82506 -13.55906 -13.31567 -13.08463 -12.92369 -12.37344 -11.80485 -11.67142 -11.29704 -11.21359 -11.12269 -11.04641 -10.96334 -10.88782 -10.79904 -10.51266 -10.15352 -9.93840 -9.08554 -8.99133 -8.91051 -8.76107 -8.31940 -7.72539 -7.10563 -5.99229 -3.64276 2.39479 3.10205 3.29377 3.43853 3.48019 3.49319 4.40866 4.42856 4.54953 4.61386 4.64440 4.69721 4.80444 5.06621 5.13413 5.27022 5.36701 5.42490 5.49254 5.56457 5.69772 5.75215 5.78357 5.81706 5.97465 6.05908 6.09414 6.11127 6.16725 6.23221 6.47062 6.59668 6.73618 6.85548 7.31735 7.46557 7.63666 7.96414 8.02015 8.26267 8.72500 8.89279 9.46330 9.79100 10.19209 11.06681 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.014617 B = 0.005952 C = 0.005007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.131330 B = 4702.969464 C = 5590.879535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.364 6.364 3 C 0.052 3.948 4 C 0.116 3.884 5 N -0.411 5.411 6 C -0.285 4.285 7 H 0.114 0.886 8 C 0.036 3.964 9 N -0.886 5.886 10 Si 0.919 3.081 11 H -0.274 1.274 12 H -0.291 1.291 13 H -0.276 1.276 14 C 0.540 3.460 15 O -0.617 6.617 16 C -0.005 4.005 17 C -0.007 4.007 18 N -0.465 5.465 19 C 0.178 3.822 20 N -0.412 5.412 21 C -0.030 4.030 22 C -0.123 4.123 23 C -0.133 4.133 24 C 0.106 3.894 25 H 0.030 0.970 26 H 0.077 0.923 27 H 0.029 0.971 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.115 0.885 31 H 0.070 0.930 32 H 0.263 0.737 33 H 0.177 0.823 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.804 -1.589 -13.756 14.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.282 6.282 3 C -0.025 4.025 4 C -0.008 4.008 5 N -0.126 5.126 6 C -0.414 4.414 7 H 0.131 0.869 8 C -0.166 4.166 9 N -0.526 5.526 10 Si 0.747 3.253 11 H -0.199 1.199 12 H -0.217 1.217 13 H -0.201 1.201 14 C 0.329 3.671 15 O -0.505 6.505 16 C -0.135 4.135 17 C -0.143 4.143 18 N -0.150 5.150 19 C -0.084 4.084 20 N -0.130 5.130 21 C -0.069 4.069 22 C -0.161 4.161 23 C -0.171 4.171 24 C -0.017 4.017 25 H 0.049 0.951 26 H 0.095 0.905 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.133 0.867 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.194 0.806 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.626 -1.795 -13.002 13.386 hybrid contribution -0.152 0.046 -0.462 0.489 sum -2.778 -1.750 -13.465 13.859 Atomic orbital electron populations 1.22634 0.83585 1.01661 0.98703 1.88155 1.17240 1.27760 1.95004 1.23067 0.96700 0.84265 0.98513 1.21466 0.88824 0.99198 0.91305 1.43203 1.54668 1.07993 1.06783 1.19930 1.32613 0.81873 1.06960 0.86860 1.25362 0.94865 0.99504 0.96845 1.69863 1.32021 1.35616 1.15061 0.86126 0.78032 0.83960 0.77216 1.19910 1.21684 1.20138 1.17192 0.81064 0.85251 0.83556 1.90594 1.59682 1.13826 1.86424 1.20781 1.09252 0.89563 0.93914 1.22355 1.07947 0.95037 0.88951 1.45414 1.53552 1.08249 1.07797 1.23798 1.07439 0.88378 0.88792 1.71014 1.14457 1.16086 1.11477 1.20116 1.03140 0.90955 0.92675 1.21658 1.01126 0.97730 0.95627 1.21867 1.00210 0.93788 1.01238 1.21881 1.01309 0.99837 0.78660 0.95117 0.90482 0.95223 0.94244 0.94271 0.86727 0.91191 0.92720 0.80573 0.88895 0.89647 0.90391 0.91319 0.90652 0.89781 0.89658 0.90285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 101.05 1.11 1.65 16 2 O -0.36 -8.26 10.46 -35.23 -0.37 -8.63 16 3 C 0.05 1.16 6.24 37.16 0.23 1.39 16 4 C 0.12 2.98 5.28 -4.04 -0.02 2.96 16 5 N -0.41 -11.41 2.45 -116.09 -0.28 -11.70 16 6 C -0.28 -8.04 7.78 -14.99 -0.12 -8.16 16 7 H 0.11 3.24 5.77 -52.49 -0.30 2.94 16 8 C 0.04 1.01 5.07 -17.46 -0.09 0.92 16 9 N -0.89 -25.57 11.39 55.50 0.63 -24.94 16 10 Si 0.92 22.05 29.57 -169.99 -5.03 17.03 16 11 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 C 0.54 14.74 7.57 -12.60 -0.10 14.65 16 15 O -0.62 -17.35 16.53 5.23 0.09 -17.27 16 16 C -0.01 -0.13 6.71 -82.98 -0.56 -0.68 16 17 C -0.01 -0.13 11.36 -16.53 -0.19 -0.32 16 18 N -0.46 -7.51 3.13 -113.24 -0.35 -7.87 16 19 C 0.18 3.25 7.65 -154.61 -1.18 2.07 16 20 N -0.41 -9.62 7.99 -7.00 -0.06 -9.68 16 21 C -0.03 -0.40 6.33 -27.48 -0.17 -0.57 16 22 C -0.12 -1.13 5.95 -26.46 -0.16 -1.29 16 23 C -0.13 -1.12 5.93 -26.53 -0.16 -1.28 16 24 C 0.11 1.10 6.96 -3.88 -0.03 1.07 16 25 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.11 3.14 5.67 -51.93 -0.29 2.85 16 31 H 0.07 1.80 7.53 -51.93 -0.39 1.41 16 32 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.18 3.05 8.06 -52.49 -0.42 2.62 16 34 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 38 H 0.07 0.68 8.11 -51.93 -0.42 0.26 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.09 0.76 8.14 -51.92 -0.42 0.34 16 41 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 337.84 15.07 5.09 5.09 Total: -1.00 -35.44 337.84 -7.74 -43.18 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -6.04 Total: 2.38 kcal Atomic # 6 Polarization: 13.83 SS G_CDS: -1.42 Total: 12.41 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: -0.06 Total: -54.18 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.28 Total: -25.90 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.44 -7.74 -43.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697208034.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.183 kcal (2) G-P(sol) polarization free energy of solvation -35.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds