Wall clock time and date at job start Tue Mar 31 2020 03:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 113.99959 * 2 1 4 4 C 1.53006 * 109.47054 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46986 * 64.99687 * 4 3 2 6 6 C 1.36953 * 120.00192 * 264.10340 * 5 4 3 7 7 H 1.07998 * 119.99522 * 137.40432 * 6 5 4 8 8 C 1.38986 * 119.99935 * 317.41275 * 6 5 4 9 9 N 1.31407 * 119.99738 * 347.26326 * 8 6 5 10 10 Si 1.86802 * 119.99835 * 167.26866 * 8 6 5 11 11 H 1.48500 * 109.47048 * 59.99329 * 10 8 6 12 12 H 1.48495 * 109.46945 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.46821 * 299.99734 * 10 8 6 14 14 C 1.34776 * 119.99730 * 84.11321 * 5 4 3 15 15 O 1.21653 * 120.00107 * 5.81844 * 14 5 4 16 16 C 1.47237 * 119.99760 * 185.82202 * 14 5 4 17 17 C 1.36674 * 126.19972 * 174.76556 * 16 14 5 18 18 N 1.35418 * 106.67576 * 179.97438 * 17 16 14 19 19 C 1.36386 * 107.77094 * 0.04483 * 18 17 16 20 20 N 1.29730 * 108.95158 * 359.96428 * 19 18 17 21 21 C 1.51106 * 123.82784 * 179.84288 * 19 18 17 22 22 C 1.53394 * 108.23088 * 344.10727 * 21 19 18 23 23 C 1.53137 * 109.26023 * 48.93804 * 22 21 19 24 24 C 1.46559 * 127.54475 * 180.10947 * 18 17 16 25 25 H 1.09005 * 109.47184 * 60.00247 * 1 2 3 26 26 H 1.09005 * 109.46975 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47185 * 300.00078 * 1 2 3 28 28 H 1.09000 * 109.47065 * 59.99832 * 3 2 1 29 29 H 1.08997 * 109.46716 * 299.99603 * 3 2 1 30 30 H 1.09001 * 109.46595 * 304.99715 * 4 3 2 31 31 H 1.08999 * 109.47071 * 184.99963 * 4 3 2 32 32 H 0.97003 * 119.99468 * 180.02562 * 9 8 6 33 33 H 1.07997 * 126.66053 * 359.95238 * 17 16 14 34 34 H 1.08994 * 109.72333 * 224.41151 * 21 19 18 35 35 H 1.08999 * 109.71719 * 103.79790 * 21 19 18 36 36 H 1.08998 * 109.50207 * 168.86889 * 22 21 19 37 37 H 1.09002 * 109.50460 * 288.99862 * 22 21 19 38 38 H 1.08993 * 109.46721 * 50.22329 * 23 22 21 39 39 H 1.09000 * 109.45697 * 170.19183 * 23 22 21 40 40 H 1.09009 * 109.58300 * 43.00871 * 24 18 17 41 41 H 1.08992 * 109.59146 * 282.58592 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9756 0.5643 -1.2527 6 6 4.2131 -0.7835 -1.3028 7 1 3.8731 -1.3605 -2.1500 8 6 4.8914 -1.4087 -0.2632 9 7 5.5206 -0.6883 0.6378 10 14 4.9086 -3.2730 -0.1470 11 1 5.5282 -3.8396 -1.3718 12 1 5.6952 -3.6875 1.0424 13 1 3.5165 -3.7738 -0.0195 14 6 4.1471 1.3202 -2.3553 15 8 4.0397 2.5300 -2.2862 16 6 4.4644 0.6817 -3.6435 17 6 4.5648 1.3103 -4.8530 18 7 4.8706 0.3552 -5.7631 19 6 4.9517 -0.8364 -5.1047 20 7 4.7101 -0.6394 -3.8454 21 6 5.2721 -2.1500 -5.7793 22 6 5.0837 -1.9717 -7.2911 23 6 5.8141 -0.7046 -7.7452 24 6 5.0849 0.5291 -7.2024 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.6885 1.8464 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 3.8514 0.5682 0.8410 31 1 3.9785 2.1765 0.0889 32 1 5.9943 -1.1247 1.3632 33 1 4.4268 2.3639 -5.0455 34 1 4.5986 -2.9251 -5.4137 35 1 6.3041 -2.4299 -5.5679 36 1 5.4946 -2.8356 -7.8135 37 1 4.0213 -1.8802 -7.5172 38 1 6.8358 -0.7187 -7.3661 39 1 5.8315 -0.6662 -8.8344 40 1 5.6913 1.4180 -7.3768 41 1 4.1236 0.6359 -7.7048 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697208034.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:29 Heat of formation + Delta-G solvation = -30.497542 kcal Electronic energy + Delta-G solvation = -24456.180487 eV Core-core repulsion = 20950.850231 eV Total energy + Delta-G solvation = -3505.330255 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.08894 -40.24672 -38.52649 -37.21105 -36.51142 -34.18069 -33.36605 -31.48194 -30.19542 -29.38302 -27.26092 -26.58008 -25.46311 -24.22637 -22.97739 -22.52087 -20.75923 -19.83563 -19.01829 -17.81789 -17.36283 -17.16357 -16.83878 -16.70038 -16.11704 -16.04854 -15.79140 -15.17193 -15.07517 -14.86695 -14.80088 -14.45520 -14.35481 -13.96455 -13.55604 -13.27870 -12.93888 -12.79889 -12.65260 -12.52119 -12.45885 -12.06169 -11.99286 -11.90647 -11.84692 -11.72771 -10.97999 -10.75878 -10.51957 -10.40346 -10.28377 -9.40361 -9.08813 -8.09799 -5.80861 0.81001 1.46543 1.51195 1.58714 1.74072 1.88149 2.45222 2.84337 2.95890 3.09826 3.30716 3.49799 3.74195 3.79873 3.87638 4.17210 4.24013 4.30568 4.40088 4.48080 4.51745 4.52958 4.56101 4.61605 4.63237 4.73012 4.79199 4.87924 4.90796 5.01956 5.03621 5.14901 5.30972 5.35846 5.39511 5.64964 5.88335 6.15114 6.33785 6.42501 6.76052 7.15104 7.38022 7.73056 8.10680 8.96098 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.014617 B = 0.005952 C = 0.005007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.131330 B = 4702.969464 C = 5590.879535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.399 6.399 3 C 0.066 3.934 4 C 0.114 3.886 5 N -0.427 5.427 6 C -0.288 4.288 7 H 0.107 0.893 8 C -0.011 4.011 9 N -0.918 5.918 10 Si 0.980 3.020 11 H -0.266 1.266 12 H -0.286 1.286 13 H -0.272 1.272 14 C 0.527 3.473 15 O -0.641 6.641 16 C -0.065 4.065 17 C 0.016 3.984 18 N -0.453 5.453 19 C 0.184 3.816 20 N -0.466 5.466 21 C -0.034 4.034 22 C -0.115 4.115 23 C -0.128 4.128 24 C 0.092 3.908 25 H 0.037 0.963 26 H 0.093 0.907 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.029 0.971 30 H 0.095 0.905 31 H 0.057 0.943 32 H 0.263 0.737 33 H 0.197 0.803 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.108 0.892 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.124 0.876 40 H 0.105 0.895 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.170 -2.834 -16.772 17.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.318 6.318 3 C -0.011 4.011 4 C -0.010 4.010 5 N -0.142 5.142 6 C -0.417 4.417 7 H 0.124 0.876 8 C -0.209 4.209 9 N -0.559 5.559 10 Si 0.805 3.195 11 H -0.191 1.191 12 H -0.211 1.211 13 H -0.197 1.197 14 C 0.318 3.682 15 O -0.531 6.531 16 C -0.194 4.194 17 C -0.124 4.124 18 N -0.136 5.136 19 C -0.080 4.080 20 N -0.185 5.185 21 C -0.073 4.073 22 C -0.153 4.153 23 C -0.166 4.166 24 C -0.028 4.028 25 H 0.056 0.944 26 H 0.111 0.889 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.048 0.952 30 H 0.113 0.887 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.213 0.787 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.127 0.873 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.142 0.858 40 H 0.123 0.877 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.001 -3.048 -16.058 16.618 hybrid contribution -0.056 0.489 0.330 0.592 sum -3.057 -2.560 -15.728 16.226 Atomic orbital electron populations 1.22889 0.80577 1.03324 1.00272 1.88081 1.20581 1.27853 1.95304 1.22814 0.94222 0.84589 0.99490 1.21410 0.91496 0.97762 0.90311 1.43409 1.55269 1.08119 1.07391 1.19984 1.32593 0.82185 1.06892 0.87590 1.26160 0.94520 1.03779 0.96463 1.69990 1.33073 1.37176 1.15694 0.85182 0.78126 0.78712 0.77445 1.19082 1.21123 1.19709 1.17788 0.80315 0.85279 0.84798 1.90530 1.60788 1.14634 1.87170 1.20594 1.13789 0.90964 0.94041 1.22544 1.05441 0.96124 0.88251 1.45725 1.51310 1.06704 1.09825 1.24594 1.05007 0.90560 0.87865 1.70795 1.16825 1.16116 1.14800 1.20408 1.03258 0.88182 0.95451 1.21671 1.01790 0.99554 0.92287 1.21927 0.99182 0.91992 1.03456 1.22469 1.03393 1.02050 0.74869 0.94394 0.88856 0.92676 0.91010 0.95226 0.88711 0.92508 0.92791 0.78662 0.89192 0.89092 0.87337 0.91018 0.91255 0.85793 0.87716 0.88005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 11.01 113.37 1.25 2.09 16 2 O -0.40 -18.33 10.46 -148.98 -1.56 -19.89 16 3 C 0.07 3.01 6.24 71.98 0.45 3.46 16 4 C 0.11 6.16 5.28 86.38 0.46 6.61 16 5 N -0.43 -24.84 2.45 -639.43 -1.57 -26.41 16 6 C -0.29 -16.90 7.78 84.07 0.65 -16.25 16 7 H 0.11 6.32 5.77 -2.91 -0.02 6.30 16 8 C -0.01 -0.63 5.07 84.94 0.43 -0.20 16 9 N -0.92 -55.06 11.39 21.67 0.25 -54.81 16 10 Si 0.98 46.18 29.57 68.60 2.03 48.21 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 12 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 13 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 14 C 0.53 30.20 7.57 86.61 0.66 30.85 16 15 O -0.64 -37.70 16.53 -4.20 -0.07 -37.77 16 16 C -0.07 -3.26 6.71 40.52 0.27 -2.99 16 17 C 0.02 0.62 11.36 83.77 0.95 1.57 16 18 N -0.45 -13.80 3.13 -512.19 -1.60 -15.40 16 19 C 0.18 6.57 7.65 138.05 1.06 7.62 16 20 N -0.47 -22.33 7.99 -176.07 -1.41 -23.74 16 21 C -0.03 -0.83 6.33 30.11 0.19 -0.64 16 22 C -0.12 -1.63 5.95 30.77 0.18 -1.45 16 23 C -0.13 -1.54 5.93 30.72 0.18 -1.35 16 24 C 0.09 1.55 6.96 86.45 0.60 2.15 16 25 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 26 H 0.09 2.73 8.14 -2.38 -0.02 2.71 16 27 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 29 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.09 5.48 5.67 -2.39 -0.01 5.47 16 31 H 0.06 3.11 7.53 -2.39 -0.02 3.09 16 32 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 33 H 0.20 6.59 8.06 -2.91 -0.02 6.57 16 34 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.07 1.01 8.12 -2.39 -0.02 0.99 16 38 H 0.07 0.97 8.11 -2.39 -0.02 0.95 16 39 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 41 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -82.67 337.84 4.43 -78.25 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 1.03 Total: 20.09 kcal Atomic # 6 Polarization: 24.15 SS G_CDS: 7.33 Total: 31.49 kcal Atomic # 7 Polarization: -116.03 SS G_CDS: -4.33 Total: -120.37 kcal Atomic # 8 Polarization: -56.04 SS G_CDS: -1.63 Total: -57.67 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -82.67 4.43 -78.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697208034.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.750 kcal (2) G-P(sol) polarization free energy of solvation -82.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds