Wall clock time and date at job start Tue Mar 31 2020 03:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00159 * 2 1 4 4 H 1.48500 * 109.46970 * 239.99873 * 3 2 1 5 5 H 1.48495 * 109.47110 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46847 * 120.00125 * 3 2 1 7 7 C 1.38820 * 119.99794 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99758 * 163.08144 * 7 2 1 9 9 N 1.36932 * 119.99910 * 343.08163 * 7 2 1 10 10 C 1.46925 * 120.63311 * 331.83866 * 9 7 2 11 11 C 1.53184 * 108.77931 * 233.58832 * 10 9 7 12 12 C 1.53038 * 109.31454 * 305.36604 * 11 10 9 13 13 N 1.46501 * 109.45879 * 181.38109 * 12 11 10 14 14 C 1.34781 * 119.99651 * 154.97183 * 13 12 11 15 15 O 1.21283 * 120.00133 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.00022 * 179.97438 * 14 13 12 17 17 C 1.52998 * 109.46912 * 180.02562 * 16 14 13 18 18 N 1.46509 * 109.46897 * 180.02562 * 17 16 14 19 19 C 1.35308 * 125.86813 * 124.99675 * 18 17 16 20 20 C 1.35356 * 106.17295 * 179.97438 * 19 18 17 21 21 N 1.33764 * 106.49738 * 0.02562 * 20 19 18 22 22 N 1.28643 * 108.88852 * 359.97438 * 21 20 19 23 23 C 1.53047 * 109.52657 * 61.37081 * 12 11 10 24 24 C 1.46926 * 120.62857 * 151.82458 * 9 7 2 25 25 H 0.96996 * 119.99704 * 0.02562 * 1 2 3 26 26 H 1.09009 * 109.58212 * 113.80324 * 10 9 7 27 27 H 1.09005 * 109.70346 * 353.45041 * 10 9 7 28 28 H 1.08998 * 109.50080 * 185.41162 * 11 10 9 29 29 H 1.09003 * 109.49679 * 65.31733 * 11 10 9 30 30 H 1.08992 * 109.46533 * 301.35815 * 12 11 10 31 31 H 0.96996 * 120.00657 * 334.97775 * 13 12 11 32 32 H 1.09005 * 109.46490 * 60.00492 * 16 14 13 33 33 H 1.08995 * 109.47112 * 300.00542 * 16 14 13 34 34 H 1.08996 * 109.47249 * 60.00690 * 17 16 14 35 35 H 1.08997 * 109.47026 * 299.99668 * 17 16 14 36 36 H 1.08000 * 126.91530 * 359.97438 * 19 18 17 37 37 H 1.08004 * 126.74805 * 179.97438 * 20 19 18 38 38 H 1.09004 * 109.49607 * 58.57856 * 23 12 11 39 39 H 1.08993 * 109.49657 * 178.67272 * 23 12 11 40 40 H 1.09001 * 109.58362 * 246.19841 * 24 9 7 41 41 H 1.09000 * 109.58835 * 6.47773 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0552 -1.2226 -0.2716 9 7 1.3700 -2.3623 0.3462 10 6 0.2260 -2.3399 1.2678 11 6 0.4972 -3.3190 2.4143 12 6 0.8117 -4.7007 1.8362 13 7 1.0392 -5.6474 2.9308 14 6 0.8352 -6.9653 2.7353 15 8 0.4637 -7.3674 1.6530 16 6 1.0698 -7.9393 3.8611 17 6 0.7680 -9.3593 3.3780 18 7 0.9955 -10.3062 4.4726 19 6 0.0975 -11.2002 4.9470 20 6 0.7204 -11.8654 5.9478 21 7 1.9524 -11.3521 6.0360 22 7 2.0841 -10.4305 5.1481 23 6 2.0673 -4.6171 0.9652 24 6 1.8138 -3.6529 -0.1979 25 1 -0.4849 0.8400 -0.0004 26 1 -0.6772 -2.6405 0.7365 27 1 0.0966 -1.3346 1.6687 28 1 -0.3834 -3.3839 3.0533 29 1 1.3469 -2.9675 2.9996 30 1 -0.0283 -5.0408 1.2306 31 1 1.3366 -5.3259 3.7963 32 1 0.4152 -7.6927 4.6971 33 1 2.1093 -7.8787 4.1833 34 1 1.4228 -9.6056 2.5422 35 1 -0.2714 -9.4202 3.0556 36 1 -0.9130 -11.3525 4.5974 37 1 0.3041 -12.6548 6.5562 38 1 2.9021 -4.2532 1.5643 39 1 2.3044 -5.6059 0.5728 40 1 1.0402 -4.0605 -0.8487 41 1 2.7332 -3.5131 -0.7665 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701244768.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:57 Heat of formation + Delta-G solvation = 79.581722 kcal Electronic energy + Delta-G solvation = -22953.321032 eV Core-core repulsion = 19485.056923 eV Total energy + Delta-G solvation = -3468.264109 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.52260 -39.99453 -37.55304 -35.54662 -34.53644 -32.36387 -31.43282 -31.21648 -30.16550 -29.38897 -26.03082 -24.68909 -22.98569 -22.41618 -22.14397 -21.47602 -20.32075 -19.34589 -18.15474 -17.16052 -16.73352 -16.39468 -16.04753 -15.63241 -15.19657 -14.83513 -14.53573 -14.04593 -13.72889 -13.61642 -13.56980 -13.02761 -12.99914 -12.67706 -12.42082 -12.13643 -11.77225 -11.53489 -11.19446 -11.17808 -10.94649 -10.75368 -10.57072 -10.48352 -10.36016 -10.11082 -10.03078 -9.79691 -9.69700 -9.57174 -8.86080 -8.50676 -6.73862 -5.84241 -3.26691 1.29270 1.95628 2.29979 2.51682 3.20340 3.35735 3.41357 3.42472 4.00662 4.20710 4.30320 4.45678 4.58425 4.72915 4.87520 4.91144 5.06613 5.25150 5.26602 5.35411 5.43081 5.47029 5.51365 5.78022 5.85187 5.99869 6.16567 6.23018 6.24250 6.44746 6.46797 6.50360 6.72718 6.79127 6.92450 7.24783 7.46702 7.58463 7.75123 8.15063 8.21753 8.39836 9.15948 9.78911 10.35704 11.24769 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.049277 B = 0.002474 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.074661 B =11315.242555 C =11357.495810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.002 3.998 3 Si 0.904 3.096 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.254 4.254 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.174 3.826 11 C -0.147 4.147 12 C 0.150 3.850 13 N -0.719 5.719 14 C 0.517 3.483 15 O -0.544 6.544 16 C -0.156 4.156 17 C 0.131 3.869 18 N -0.290 5.290 19 C -0.048 4.048 20 C -0.055 4.055 21 N -0.274 5.274 22 N -0.085 5.085 23 C -0.139 4.139 24 C 0.147 3.853 25 H 0.255 0.745 26 H 0.021 0.979 27 H 0.092 0.908 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.398 0.602 32 H 0.100 0.900 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.116 0.884 36 H 0.191 0.809 37 H 0.189 0.811 38 H 0.059 0.941 39 H 0.054 0.946 40 H 0.020 0.980 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.068 -18.405 10.434 21.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.383 4.383 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.187 4.187 12 C 0.047 3.953 13 N -0.368 5.368 14 C 0.302 3.698 15 O -0.422 6.422 16 C -0.197 4.197 17 C 0.010 3.990 18 N -0.084 5.084 19 C -0.199 4.199 20 C -0.212 4.212 21 N -0.140 5.140 22 N -0.065 5.065 23 C -0.179 4.179 24 C 0.020 3.980 25 H 0.065 0.935 26 H 0.039 0.961 27 H 0.110 0.890 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.101 0.899 31 H 0.232 0.768 32 H 0.119 0.881 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.134 0.866 36 H 0.208 0.792 37 H 0.206 0.794 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.038 0.962 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.008 -17.989 9.797 20.509 hybrid contribution -0.680 0.661 0.245 0.980 sum -1.688 -17.328 10.043 20.099 Atomic orbital electron populations 1.70010 1.05264 1.25709 1.53806 1.25064 0.95311 0.98476 1.00783 0.86352 0.78903 0.83239 0.78168 1.20835 1.21620 1.21028 1.19150 0.92581 0.84752 1.41862 0.91657 1.44083 1.35809 1.01673 1.49959 1.20741 0.88919 0.97938 0.87641 1.22546 1.00582 0.94664 1.00902 1.21106 0.98657 0.88237 0.87313 1.46346 1.67984 1.06374 1.16123 1.20107 0.77584 0.83339 0.88780 1.90739 1.46761 1.78287 1.26415 1.21898 1.06069 0.92751 0.99013 1.21878 1.05567 0.85803 0.85725 1.47608 1.09498 1.25831 1.25428 1.23763 0.99185 0.96262 1.00695 1.23651 0.92210 1.04410 1.00975 1.75135 1.17719 1.05895 1.15240 1.78316 1.07973 1.16290 1.03946 1.22380 0.97067 0.99594 0.98903 1.20873 0.97971 0.86536 0.92592 0.93511 0.96100 0.88976 0.92729 0.92092 0.89887 0.76815 0.88125 0.87070 0.87125 0.86574 0.79182 0.79359 0.92246 0.92709 0.96181 0.92485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.65 11.19 55.49 0.62 -25.03 16 2 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 3 Si 0.90 21.27 29.59 -169.99 -5.03 16.24 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.25 -6.82 9.58 -15.06 -0.14 -6.96 16 8 H 0.07 1.73 7.89 -52.49 -0.41 1.31 16 9 N -0.59 -14.45 2.99 -172.32 -0.52 -14.96 16 10 C 0.17 3.96 5.30 -3.72 -0.02 3.94 16 11 C -0.15 -2.54 5.55 -26.62 -0.15 -2.69 16 12 C 0.15 2.41 2.42 -67.89 -0.16 2.25 16 13 N -0.72 -8.78 5.08 -53.76 -0.27 -9.05 16 14 C 0.52 6.11 7.79 -10.98 -0.09 6.03 16 15 O -0.54 -8.36 15.64 5.55 0.09 -8.28 16 16 C -0.16 -1.26 5.83 -27.88 -0.16 -1.42 16 17 C 0.13 1.01 5.75 -4.04 -0.02 0.99 16 18 N -0.29 -2.60 3.44 -61.26 -0.21 -2.81 16 19 C -0.05 -0.33 11.57 -17.05 -0.20 -0.53 16 20 C -0.06 -0.46 12.05 -17.74 -0.21 -0.67 16 21 N -0.27 -3.31 12.41 30.24 0.38 -2.93 16 22 N -0.09 -1.02 12.91 60.35 0.78 -0.24 16 23 C -0.14 -2.41 5.65 -26.61 -0.15 -2.57 16 24 C 0.15 3.07 6.52 -3.71 -0.02 3.05 16 25 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 26 H 0.02 0.50 8.14 -51.92 -0.42 0.08 16 27 H 0.09 2.34 6.07 -51.93 -0.31 2.03 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.08 1.50 7.58 -51.93 -0.39 1.11 16 31 H 0.40 3.85 8.60 -40.82 -0.35 3.49 16 32 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.11 0.89 8.12 -51.93 -0.42 0.46 16 34 H 0.11 0.91 8.10 -51.93 -0.42 0.49 16 35 H 0.12 0.72 8.02 -51.93 -0.42 0.30 16 36 H 0.19 0.58 8.06 -52.49 -0.42 0.16 16 37 H 0.19 0.90 8.06 -52.48 -0.42 0.48 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 LS Contribution 341.22 15.07 5.14 5.14 Total: -1.00 -33.13 341.22 -6.53 -39.65 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -6.08 Total: 0.89 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -1.42 Total: 1.38 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: 0.78 Total: -55.03 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: 0.09 Total: -8.28 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.13 -6.53 -39.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701244768.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.237 kcal (2) G-P(sol) polarization free energy of solvation -33.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds