Wall clock time and date at job start Tue Mar 31 2020 03:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00159 * 2 1 4 4 H 1.48500 * 109.46970 * 239.99873 * 3 2 1 5 5 H 1.48495 * 109.47110 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46847 * 120.00125 * 3 2 1 7 7 C 1.38820 * 119.99794 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99758 * 163.08144 * 7 2 1 9 9 N 1.36932 * 119.99910 * 343.08163 * 7 2 1 10 10 C 1.46925 * 120.63311 * 331.83866 * 9 7 2 11 11 C 1.53184 * 108.77931 * 233.58832 * 10 9 7 12 12 C 1.53038 * 109.31454 * 305.36604 * 11 10 9 13 13 N 1.46501 * 109.45879 * 181.38109 * 12 11 10 14 14 C 1.34781 * 119.99651 * 154.97183 * 13 12 11 15 15 O 1.21283 * 120.00133 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.00022 * 179.97438 * 14 13 12 17 17 C 1.52998 * 109.46912 * 180.02562 * 16 14 13 18 18 N 1.46509 * 109.46897 * 180.02562 * 17 16 14 19 19 C 1.35308 * 125.86813 * 124.99675 * 18 17 16 20 20 C 1.35356 * 106.17295 * 179.97438 * 19 18 17 21 21 N 1.33764 * 106.49738 * 0.02562 * 20 19 18 22 22 N 1.28643 * 108.88852 * 359.97438 * 21 20 19 23 23 C 1.53047 * 109.52657 * 61.37081 * 12 11 10 24 24 C 1.46926 * 120.62857 * 151.82458 * 9 7 2 25 25 H 0.96996 * 119.99704 * 0.02562 * 1 2 3 26 26 H 1.09009 * 109.58212 * 113.80324 * 10 9 7 27 27 H 1.09005 * 109.70346 * 353.45041 * 10 9 7 28 28 H 1.08998 * 109.50080 * 185.41162 * 11 10 9 29 29 H 1.09003 * 109.49679 * 65.31733 * 11 10 9 30 30 H 1.08992 * 109.46533 * 301.35815 * 12 11 10 31 31 H 0.96996 * 120.00657 * 334.97775 * 13 12 11 32 32 H 1.09005 * 109.46490 * 60.00492 * 16 14 13 33 33 H 1.08995 * 109.47112 * 300.00542 * 16 14 13 34 34 H 1.08996 * 109.47249 * 60.00690 * 17 16 14 35 35 H 1.08997 * 109.47026 * 299.99668 * 17 16 14 36 36 H 1.08000 * 126.91530 * 359.97438 * 19 18 17 37 37 H 1.08004 * 126.74805 * 179.97438 * 20 19 18 38 38 H 1.09004 * 109.49607 * 58.57856 * 23 12 11 39 39 H 1.08993 * 109.49657 * 178.67272 * 23 12 11 40 40 H 1.09001 * 109.58362 * 246.19841 * 24 9 7 41 41 H 1.09000 * 109.58835 * 6.47773 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0552 -1.2226 -0.2716 9 7 1.3700 -2.3623 0.3462 10 6 0.2260 -2.3399 1.2678 11 6 0.4972 -3.3190 2.4143 12 6 0.8117 -4.7007 1.8362 13 7 1.0392 -5.6474 2.9308 14 6 0.8352 -6.9653 2.7353 15 8 0.4637 -7.3674 1.6530 16 6 1.0698 -7.9393 3.8611 17 6 0.7680 -9.3593 3.3780 18 7 0.9955 -10.3062 4.4726 19 6 0.0975 -11.2002 4.9470 20 6 0.7204 -11.8654 5.9478 21 7 1.9524 -11.3521 6.0360 22 7 2.0841 -10.4305 5.1481 23 6 2.0673 -4.6171 0.9652 24 6 1.8138 -3.6529 -0.1979 25 1 -0.4849 0.8400 -0.0004 26 1 -0.6772 -2.6405 0.7365 27 1 0.0966 -1.3346 1.6687 28 1 -0.3834 -3.3839 3.0533 29 1 1.3469 -2.9675 2.9996 30 1 -0.0283 -5.0408 1.2306 31 1 1.3366 -5.3259 3.7963 32 1 0.4152 -7.6927 4.6971 33 1 2.1093 -7.8787 4.1833 34 1 1.4228 -9.6056 2.5422 35 1 -0.2714 -9.4202 3.0556 36 1 -0.9130 -11.3525 4.5974 37 1 0.3041 -12.6548 6.5562 38 1 2.9021 -4.2532 1.5643 39 1 2.3044 -5.6059 0.5728 40 1 1.0402 -4.0605 -0.8487 41 1 2.7332 -3.5131 -0.7665 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701244768.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:56 Heat of formation + Delta-G solvation = 56.119734 kcal Electronic energy + Delta-G solvation = -22954.338420 eV Core-core repulsion = 19485.056923 eV Total energy + Delta-G solvation = -3469.281497 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.16787 -41.06949 -39.05060 -36.35570 -35.91408 -33.98682 -32.38094 -31.92292 -31.68325 -30.94852 -27.29900 -26.06001 -23.98952 -23.70596 -23.49163 -22.33805 -21.37590 -20.86469 -19.00377 -18.68528 -17.61614 -17.35828 -17.12702 -16.80851 -16.46968 -15.77774 -15.63674 -15.36780 -15.26881 -14.90733 -14.67551 -14.47515 -14.11137 -14.04035 -13.62321 -13.21078 -13.00617 -12.80798 -12.59700 -12.55898 -12.42382 -12.24323 -12.04573 -11.88116 -11.84957 -11.57950 -11.37051 -11.19744 -10.88691 -10.55970 -10.30812 -10.03168 -8.71636 -7.89114 -5.34650 0.67933 1.34026 1.48276 1.49798 1.56910 1.57453 1.65975 2.24065 2.51143 3.26785 3.40892 3.61532 3.64969 3.71739 3.82303 3.92415 4.05352 4.25655 4.29280 4.32656 4.35855 4.45390 4.49415 4.64176 4.66128 4.80694 4.85274 4.90071 5.01938 5.04513 5.14726 5.29475 5.31023 5.46557 5.52420 5.63524 5.65622 5.70736 6.37886 6.54107 7.13687 7.21188 7.54684 7.83335 8.35560 9.17715 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.049277 B = 0.002474 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.074661 B =11315.242555 C =11357.495810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.049 4.049 3 Si 0.968 3.032 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.276 1.276 7 C -0.265 4.265 8 H 0.066 0.934 9 N -0.610 5.610 10 C 0.177 3.823 11 C -0.129 4.129 12 C 0.162 3.838 13 N -0.710 5.710 14 C 0.521 3.479 15 O -0.579 6.579 16 C -0.141 4.141 17 C 0.131 3.869 18 N -0.289 5.289 19 C -0.033 4.033 20 C -0.065 4.065 21 N -0.314 5.314 22 N -0.125 5.125 23 C -0.125 4.125 24 C 0.144 3.856 25 H 0.251 0.749 26 H -0.004 1.004 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.414 0.586 32 H 0.122 0.878 33 H 0.115 0.885 34 H 0.102 0.898 35 H 0.136 0.864 36 H 0.233 0.767 37 H 0.218 0.782 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.009 0.991 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.144 -19.647 11.906 23.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.245 4.245 3 Si 0.796 3.204 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.202 1.202 7 C -0.395 4.395 8 H 0.084 0.916 9 N -0.333 5.333 10 C 0.051 3.949 11 C -0.169 4.169 12 C 0.058 3.942 13 N -0.361 5.361 14 C 0.308 3.692 15 O -0.459 6.459 16 C -0.181 4.181 17 C 0.011 3.989 18 N -0.083 5.083 19 C -0.185 4.185 20 C -0.223 4.223 21 N -0.179 5.179 22 N -0.104 5.104 23 C -0.165 4.165 24 C 0.018 3.982 25 H 0.060 0.940 26 H 0.014 0.986 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.251 0.749 32 H 0.141 0.859 33 H 0.133 0.867 34 H 0.120 0.880 35 H 0.154 0.846 36 H 0.249 0.751 37 H 0.234 0.766 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.027 0.973 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.043 -19.254 11.306 22.352 hybrid contribution -0.720 0.958 -0.272 1.229 sum -1.764 -18.296 11.034 21.439 Atomic orbital electron populations 1.70168 1.06633 1.26038 1.55217 1.25811 0.96061 1.01508 1.01091 0.85334 0.77558 0.79142 0.78356 1.20328 1.22031 1.20208 1.19471 0.92844 0.85922 1.41260 0.91613 1.44346 1.35986 1.02204 1.50808 1.20573 0.87723 0.97797 0.88797 1.22255 1.01953 0.93823 0.98861 1.20651 0.97221 0.88359 0.88009 1.46064 1.68138 1.06127 1.15789 1.20646 0.76211 0.83270 0.89113 1.90735 1.48215 1.78773 1.28205 1.21773 1.06822 0.91764 0.97771 1.21934 1.06528 0.85341 0.85138 1.47710 1.09348 1.26079 1.25188 1.24460 1.00199 0.94456 0.99357 1.24263 0.91234 1.05062 1.01759 1.75075 1.19883 1.06803 1.16120 1.78271 1.09489 1.17488 1.05200 1.22177 0.97834 0.98731 0.97735 1.20973 0.97348 0.85966 0.93962 0.93986 0.98612 0.92000 0.90326 0.91362 0.91887 0.74889 0.85947 0.86670 0.87969 0.84636 0.75104 0.76580 0.91728 0.91899 0.97324 0.92595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.41 11.19 21.65 0.24 -54.17 16 2 C -0.05 -2.70 4.92 84.86 0.42 -2.29 16 3 Si 0.97 44.07 29.59 68.60 2.03 46.10 16 4 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 6 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.26 -14.37 9.58 84.04 0.81 -13.57 16 8 H 0.07 3.48 7.89 -2.91 -0.02 3.46 16 9 N -0.61 -30.17 2.99 -699.10 -2.09 -32.26 16 10 C 0.18 8.21 5.30 86.36 0.46 8.67 16 11 C -0.13 -4.31 5.55 30.67 0.17 -4.14 16 12 C 0.16 5.00 2.42 45.02 0.11 5.11 16 13 N -0.71 -15.54 5.08 -442.39 -2.25 -17.78 16 14 C 0.52 11.07 7.79 87.66 0.68 11.75 16 15 O -0.58 -16.87 15.64 -3.04 -0.05 -16.92 16 16 C -0.14 -1.87 5.83 29.85 0.17 -1.70 16 17 C 0.13 1.70 5.75 86.38 0.50 2.19 16 18 N -0.29 -4.53 3.44 -347.72 -1.20 -5.72 16 19 C -0.03 -0.36 11.57 83.49 0.97 0.61 16 20 C -0.07 -0.93 12.05 83.73 1.01 0.07 16 21 N -0.31 -7.27 12.41 -58.25 -0.72 -7.99 16 22 N -0.13 -2.85 12.91 37.02 0.48 -2.37 16 23 C -0.12 -4.19 5.65 30.67 0.17 -4.01 16 24 C 0.14 6.03 6.52 86.36 0.56 6.60 16 25 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 26 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 27 H 0.06 3.23 6.07 -2.38 -0.01 3.22 16 28 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.06 2.25 7.58 -2.39 -0.02 2.23 16 31 H 0.41 6.62 8.60 -92.71 -0.80 5.83 16 32 H 0.12 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.12 1.54 8.12 -2.39 -0.02 1.52 16 34 H 0.10 1.52 8.10 -2.39 -0.02 1.51 16 35 H 0.14 1.23 8.02 -2.39 -0.02 1.22 16 36 H 0.23 0.30 8.06 -2.91 -0.02 0.28 16 37 H 0.22 1.47 8.06 -2.91 -0.02 1.45 16 38 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 39 H 0.06 2.02 8.14 -2.39 -0.02 2.01 16 40 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.06 2.31 7.93 -2.39 -0.02 2.29 16 Total: -1.00 -74.11 341.22 2.71 -71.41 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 0.24 Total: 10.41 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: 6.02 Total: 9.29 kcal Atomic # 7 Polarization: -114.76 SS G_CDS: -5.54 Total: -120.30 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.05 Total: -16.92 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -74.11 2.71 -71.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701244768.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.527 kcal (2) G-P(sol) polarization free energy of solvation -74.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds