Wall clock time and date at job start Tue Mar 31 2020 03:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.39857 * 119.86383 * 2 1 4 4 C 1.29689 * 121.13995 * 199.41463 * 3 2 1 5 5 C 1.46736 * 119.54843 * 179.88252 * 4 3 2 6 6 O 1.21658 * 119.99956 * 187.96636 * 5 4 3 7 7 N 1.34776 * 120.00144 * 8.24673 * 5 4 3 8 8 C 1.46921 * 120.63041 * 190.55757 * 7 5 4 9 9 C 1.52768 * 109.00683 * 233.58089 * 8 7 5 10 10 C 1.53041 * 109.37971 * 305.58921 * 9 8 7 11 11 C 1.50707 * 109.44378 * 181.25415 * 10 9 8 12 12 H 1.07999 * 119.99626 * 245.96398 * 11 10 9 13 13 C 1.37876 * 120.00083 * 65.96615 * 11 10 9 14 14 N 1.31515 * 120.00024 * 355.65281 * 13 11 10 15 15 Si 1.86802 * 119.99844 * 175.64839 * 13 11 10 16 16 H 1.48497 * 109.47025 * 94.99876 * 15 13 11 17 17 H 1.48498 * 109.47012 * 214.99887 * 15 13 11 18 18 H 1.48498 * 109.47162 * 334.99748 * 15 13 11 19 19 C 1.53035 * 109.53877 * 61.24103 * 10 9 8 20 20 C 1.46927 * 120.62698 * 10.83301 * 7 5 4 21 21 C 1.50545 * 120.90467 * 359.60913 * 4 3 2 22 22 C 1.53011 * 109.60254 * 326.07617 * 21 4 3 23 23 C 1.34749 * 119.79911 * 179.75230 * 2 1 3 24 24 O 1.21257 * 120.12146 * 359.73010 * 23 2 1 25 25 H 1.09000 * 109.47024 * 270.24465 * 1 2 3 26 26 H 1.08999 * 109.46826 * 30.24572 * 1 2 3 27 27 H 1.08994 * 109.46856 * 150.24656 * 1 2 3 28 28 H 1.08995 * 109.59036 * 353.41527 * 8 7 5 29 29 H 1.09003 * 109.58786 * 113.84295 * 8 7 5 30 30 H 1.08999 * 109.56274 * 185.55608 * 9 8 7 31 31 H 1.08997 * 109.38182 * 65.51664 * 9 8 7 32 32 H 1.09002 * 109.45889 * 301.21423 * 10 9 8 33 33 H 0.96998 * 120.00071 * 179.97438 * 14 13 11 34 34 H 1.09007 * 109.49564 * 178.68242 * 19 10 9 35 35 H 1.08997 * 109.52736 * 58.60329 * 19 10 9 36 36 H 1.09003 * 109.58542 * 246.15763 * 20 7 5 37 37 H 1.09000 * 109.58977 * 6.44274 * 20 7 5 38 38 H 1.08998 * 109.44928 * 86.11222 * 21 4 3 39 39 H 1.09000 * 109.45166 * 206.06671 * 21 4 3 40 40 H 1.08996 * 109.51498 * 167.36411 * 22 21 4 41 41 H 1.08997 * 109.51892 * 287.47522 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1614 1.2129 0.0000 4 6 3.4033 1.2732 -0.3690 5 6 4.0996 2.5648 -0.3579 6 8 5.2139 2.6592 -0.8368 7 7 3.5069 3.6452 0.1879 8 6 4.0805 4.9855 0.0060 9 6 4.2714 5.6351 1.3754 10 6 2.9431 5.6172 2.1355 11 6 3.1223 6.2853 3.4745 12 1 3.0287 5.7083 4.3826 13 6 3.4057 7.6330 3.5400 14 7 3.6041 8.3178 2.4349 15 14 3.5075 8.4864 5.1986 16 1 4.9224 8.5283 5.6476 17 1 2.9860 9.8713 5.0756 18 1 2.6952 7.7379 6.1911 19 6 2.4923 4.1697 2.3441 20 6 2.2782 3.5043 0.9810 21 6 4.1420 0.0352 -0.8027 22 6 3.6424 -1.1682 -0.0006 23 6 2.1347 -1.1693 0.0051 24 8 1.5270 -2.2185 0.0145 25 1 -0.3633 0.0044 1.0277 26 1 -0.3633 0.8878 -0.5176 27 1 -0.3633 -0.8921 -0.5100 28 1 5.0445 4.9054 -0.4964 29 1 3.4035 5.5946 -0.5931 30 1 4.6036 6.6653 1.2476 31 1 5.0204 5.0784 1.9386 32 1 2.1884 6.1534 1.5602 33 1 3.8031 9.2660 2.4810 34 1 1.5582 4.1571 2.9059 35 1 3.2574 3.6261 2.8983 36 1 1.4512 3.9900 0.4631 37 1 2.0520 2.4470 1.1197 38 1 3.9672 -0.1385 -1.8644 39 1 5.2095 0.1695 -0.6277 40 1 4.0054 -2.0878 -0.4596 41 1 4.0110 -1.1020 1.0230 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701297508.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:19 Heat of formation + Delta-G solvation = -14.552161 kcal Electronic energy + Delta-G solvation = -24171.822657 eV Core-core repulsion = 20667.183845 eV Total energy + Delta-G solvation = -3504.638812 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.03256 -39.74758 -37.37521 -36.92185 -34.35480 -33.69568 -32.01291 -31.01957 -30.07548 -28.11554 -26.42020 -25.04963 -24.08828 -22.81681 -22.16941 -20.62996 -19.04285 -17.95622 -17.86358 -17.00884 -16.61379 -16.34536 -15.69616 -15.43317 -15.05250 -14.61026 -14.55695 -13.76606 -13.64934 -13.60599 -13.15864 -12.91396 -12.75702 -12.70990 -12.63712 -12.45842 -12.19667 -11.98366 -11.33519 -11.22318 -11.02471 -10.93488 -10.65446 -10.41697 -10.17265 -10.07504 -9.76401 -9.59948 -9.11164 -8.98219 -8.75671 -8.41403 -8.08820 -6.05092 -4.10393 0.73313 1.95053 2.20439 3.08181 3.17245 3.27240 3.35019 3.38092 3.73420 4.24035 4.32338 4.40185 4.68089 4.73409 4.94846 5.18974 5.21285 5.25827 5.36457 5.41986 5.48929 5.61295 5.78643 5.83302 5.87958 5.96034 6.14387 6.21602 6.37171 6.47939 6.62529 6.76366 6.93037 7.12934 7.25966 7.35051 7.63958 7.65730 7.73842 7.89352 7.99529 8.24579 8.38159 8.93522 9.54841 11.01546 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.025209 B = 0.003873 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.443368 B = 7228.562262 C = 7822.025111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.467 5.467 3 N -0.196 5.196 4 C 0.086 3.914 5 C 0.565 3.435 6 O -0.538 6.538 7 N -0.574 5.574 8 C 0.107 3.893 9 C -0.120 4.120 10 C 0.047 3.953 11 C -0.514 4.514 12 H 0.054 0.946 13 C 0.063 3.937 14 N -0.890 5.890 15 Si 0.889 3.111 16 H -0.282 1.282 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.125 4.125 20 C 0.084 3.916 21 C -0.104 4.104 22 C -0.143 4.143 23 C 0.495 3.505 24 O -0.523 6.523 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.099 0.901 31 H 0.040 0.960 32 H 0.031 0.969 33 H 0.260 0.740 34 H 0.062 0.938 35 H 0.049 0.951 36 H 0.066 0.934 37 H 0.114 0.886 38 H 0.101 0.899 39 H 0.115 0.885 40 H 0.118 0.882 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.680 -14.550 -6.863 16.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.288 5.288 3 N -0.009 5.009 4 C -0.107 4.107 5 C 0.349 3.651 6 O -0.414 6.414 7 N -0.305 5.305 8 C -0.014 4.014 9 C -0.159 4.159 10 C 0.029 3.971 11 C -0.552 4.552 12 H 0.072 0.928 13 C -0.139 4.139 14 N -0.529 5.529 15 Si 0.717 3.283 16 H -0.208 1.208 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.163 4.163 20 C -0.038 4.038 21 C -0.144 4.144 22 C -0.183 4.183 23 C 0.283 3.717 24 O -0.396 6.396 25 H 0.086 0.914 26 H 0.103 0.897 27 H 0.104 0.896 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.117 0.883 31 H 0.059 0.941 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.131 0.869 38 H 0.119 0.881 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.214 -14.489 -6.864 16.351 hybrid contribution 0.499 0.164 0.830 0.982 sum -2.715 -14.324 -6.034 15.779 Atomic orbital electron populations 1.21717 0.75022 1.03911 1.03229 1.49221 1.07598 1.01724 1.70238 1.75135 1.09052 1.05849 1.10826 1.25112 0.92402 0.97285 0.95879 1.17320 0.85202 0.82309 0.80304 1.90820 1.17640 1.84130 1.48768 1.48219 1.26739 1.07122 1.48436 1.21942 0.98502 0.80243 1.00698 1.21933 1.00501 1.01655 0.91802 1.18673 0.93045 0.89499 0.95905 1.21177 1.48182 0.93615 0.92238 0.92753 1.24960 0.95074 0.97539 0.96305 1.69873 1.48192 1.08271 1.26532 0.86625 0.78174 0.78988 0.84485 1.20819 1.21200 1.19931 1.22048 1.00851 0.99425 0.93969 1.22801 0.85049 1.03436 0.92555 1.20878 1.03069 0.89189 1.01254 1.21866 0.91046 1.01171 1.04228 1.21308 0.91364 0.83452 0.75540 1.90725 1.70400 1.30470 1.48026 0.91386 0.89735 0.89634 0.90313 0.91667 0.88283 0.94136 0.95101 0.92961 0.91948 0.93175 0.91612 0.86897 0.88136 0.86621 0.86371 0.87366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.95 10.73 59.85 0.64 1.60 16 2 N -0.47 -5.48 3.86 -67.06 -0.26 -5.74 16 3 N -0.20 -2.48 7.20 34.90 0.25 -2.22 16 4 C 0.09 1.10 6.61 -80.14 -0.53 0.57 16 5 C 0.56 9.05 7.60 -12.83 -0.10 8.95 16 6 O -0.54 -9.75 15.77 5.23 0.08 -9.67 16 7 N -0.57 -9.79 2.98 -174.56 -0.52 -10.31 16 8 C 0.11 2.00 6.42 -3.93 -0.03 1.98 16 9 C -0.12 -2.66 5.19 -26.83 -0.14 -2.80 16 10 C 0.05 1.09 1.99 -91.73 -0.18 0.91 16 11 C -0.51 -13.45 8.48 -34.44 -0.29 -13.74 16 12 H 0.05 1.42 7.75 -52.49 -0.41 1.01 16 13 C 0.06 1.67 5.36 -17.82 -0.10 1.57 16 14 N -0.89 -24.35 11.59 55.43 0.64 -23.70 16 15 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 C -0.12 -2.38 5.30 -26.61 -0.14 -2.52 16 20 C 0.08 1.36 5.80 -3.71 -0.02 1.33 16 21 C -0.10 -1.00 5.81 -27.95 -0.16 -1.17 16 22 C -0.14 -1.28 6.20 -27.84 -0.17 -1.45 16 23 C 0.50 5.93 7.55 -10.96 -0.08 5.85 16 24 O -0.52 -7.61 16.67 5.58 0.09 -7.51 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.09 0.77 7.41 -51.93 -0.39 0.38 16 28 H 0.08 1.46 7.01 -51.93 -0.36 1.10 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.10 2.45 6.37 -51.93 -0.33 2.12 16 31 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 34 H 0.06 1.15 8.14 -51.92 -0.42 0.73 16 35 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.11 1.66 4.24 -115.48 -0.49 1.17 16 38 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.12 1.07 7.65 -51.93 -0.40 0.67 16 40 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 330.28 15.07 4.98 4.98 Total: -1.00 -30.36 330.28 -7.21 -37.57 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -6.16 Total: -0.10 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -1.30 Total: 1.08 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: 0.11 Total: -41.98 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: 0.18 Total: -17.18 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.36 -7.21 -37.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701297508.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.017 kcal (2) G-P(sol) polarization free energy of solvation -30.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds