Wall clock time and date at job start Tue Mar 31 2020 03:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.39857 * 119.86383 * 2 1 4 4 C 1.29689 * 121.13995 * 199.41463 * 3 2 1 5 5 C 1.46736 * 119.54843 * 179.88252 * 4 3 2 6 6 O 1.21658 * 119.99956 * 187.96636 * 5 4 3 7 7 N 1.34776 * 120.00144 * 8.24673 * 5 4 3 8 8 C 1.46921 * 120.63041 * 190.55757 * 7 5 4 9 9 C 1.52768 * 109.00683 * 233.58089 * 8 7 5 10 10 C 1.53041 * 109.37971 * 305.58921 * 9 8 7 11 11 C 1.50707 * 109.44378 * 181.25415 * 10 9 8 12 12 H 1.07999 * 119.99626 * 245.96398 * 11 10 9 13 13 C 1.37876 * 120.00083 * 65.96615 * 11 10 9 14 14 N 1.31515 * 120.00024 * 355.65281 * 13 11 10 15 15 Si 1.86802 * 119.99844 * 175.64839 * 13 11 10 16 16 H 1.48497 * 109.47025 * 94.99876 * 15 13 11 17 17 H 1.48498 * 109.47012 * 214.99887 * 15 13 11 18 18 H 1.48498 * 109.47162 * 334.99748 * 15 13 11 19 19 C 1.53035 * 109.53877 * 61.24103 * 10 9 8 20 20 C 1.46927 * 120.62698 * 10.83301 * 7 5 4 21 21 C 1.50545 * 120.90467 * 359.60913 * 4 3 2 22 22 C 1.53011 * 109.60254 * 326.07617 * 21 4 3 23 23 C 1.34749 * 119.79911 * 179.75230 * 2 1 3 24 24 O 1.21257 * 120.12146 * 359.73010 * 23 2 1 25 25 H 1.09000 * 109.47024 * 270.24465 * 1 2 3 26 26 H 1.08999 * 109.46826 * 30.24572 * 1 2 3 27 27 H 1.08994 * 109.46856 * 150.24656 * 1 2 3 28 28 H 1.08995 * 109.59036 * 353.41527 * 8 7 5 29 29 H 1.09003 * 109.58786 * 113.84295 * 8 7 5 30 30 H 1.08999 * 109.56274 * 185.55608 * 9 8 7 31 31 H 1.08997 * 109.38182 * 65.51664 * 9 8 7 32 32 H 1.09002 * 109.45889 * 301.21423 * 10 9 8 33 33 H 0.96998 * 120.00071 * 179.97438 * 14 13 11 34 34 H 1.09007 * 109.49564 * 178.68242 * 19 10 9 35 35 H 1.08997 * 109.52736 * 58.60329 * 19 10 9 36 36 H 1.09003 * 109.58542 * 246.15763 * 20 7 5 37 37 H 1.09000 * 109.58977 * 6.44274 * 20 7 5 38 38 H 1.08998 * 109.44928 * 86.11222 * 21 4 3 39 39 H 1.09000 * 109.45166 * 206.06671 * 21 4 3 40 40 H 1.08996 * 109.51498 * 167.36411 * 22 21 4 41 41 H 1.08997 * 109.51892 * 287.47522 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1614 1.2129 0.0000 4 6 3.4033 1.2732 -0.3690 5 6 4.0996 2.5648 -0.3579 6 8 5.2139 2.6592 -0.8368 7 7 3.5069 3.6452 0.1879 8 6 4.0805 4.9855 0.0060 9 6 4.2714 5.6351 1.3754 10 6 2.9431 5.6172 2.1355 11 6 3.1223 6.2853 3.4745 12 1 3.0287 5.7083 4.3826 13 6 3.4057 7.6330 3.5400 14 7 3.6041 8.3178 2.4349 15 14 3.5075 8.4864 5.1986 16 1 4.9224 8.5283 5.6476 17 1 2.9860 9.8713 5.0756 18 1 2.6952 7.7379 6.1911 19 6 2.4923 4.1697 2.3441 20 6 2.2782 3.5043 0.9810 21 6 4.1420 0.0352 -0.8027 22 6 3.6424 -1.1682 -0.0006 23 6 2.1347 -1.1693 0.0051 24 8 1.5270 -2.2185 0.0145 25 1 -0.3633 0.0044 1.0277 26 1 -0.3633 0.8878 -0.5176 27 1 -0.3633 -0.8921 -0.5100 28 1 5.0445 4.9054 -0.4964 29 1 3.4035 5.5946 -0.5931 30 1 4.6036 6.6653 1.2476 31 1 5.0204 5.0784 1.9386 32 1 2.1884 6.1534 1.5602 33 1 3.8031 9.2660 2.4810 34 1 1.5582 4.1571 2.9059 35 1 3.2574 3.6261 2.8983 36 1 1.4512 3.9900 0.4631 37 1 2.0520 2.4470 1.1197 38 1 3.9672 -0.1385 -1.8644 39 1 5.2095 0.1695 -0.6277 40 1 4.0054 -2.0878 -0.4596 41 1 4.0110 -1.1020 1.0230 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701297508.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:18 Heat of formation + Delta-G solvation = -33.196004 kcal Electronic energy + Delta-G solvation = -24172.631115 eV Core-core repulsion = 20667.183845 eV Total energy + Delta-G solvation = -3505.447269 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.04516 -40.97943 -38.60788 -38.24720 -35.42319 -35.19691 -33.32755 -32.55689 -31.52131 -29.02814 -28.06368 -26.09218 -25.25139 -24.32111 -23.60238 -21.97156 -20.52893 -19.14504 -18.82524 -18.36609 -17.95250 -17.46538 -17.02113 -16.58660 -16.45165 -16.26896 -15.50302 -15.12957 -14.96328 -14.64145 -14.46761 -14.40777 -14.20626 -13.88783 -13.58819 -13.53422 -13.22971 -13.13462 -12.99732 -12.82624 -12.52697 -12.30384 -12.13120 -11.98864 -11.89525 -11.40474 -11.33125 -11.09883 -10.84914 -10.46076 -10.33839 -9.84344 -9.55057 -8.07625 -6.19702 -0.31084 1.02900 1.27184 1.41700 1.44267 1.53316 1.85898 1.98898 2.45187 2.78949 3.20465 3.34443 3.45187 3.86740 3.94010 4.10188 4.23924 4.37115 4.38675 4.47884 4.51441 4.52330 4.65482 4.71530 4.73784 4.77906 4.81177 4.90512 4.98763 5.08248 5.17902 5.19138 5.28588 5.44603 5.52343 5.67203 5.99396 6.10394 6.33956 6.40141 6.44923 6.73210 6.91644 6.95316 7.48264 8.97102 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.025209 B = 0.003873 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.443368 B = 7228.562262 C = 7822.025111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.467 5.467 3 N -0.201 5.201 4 C 0.086 3.914 5 C 0.568 3.432 6 O -0.558 6.558 7 N -0.582 5.582 8 C 0.119 3.881 9 C -0.109 4.109 10 C 0.044 3.956 11 C -0.533 4.533 12 H 0.050 0.950 13 C 0.016 3.984 14 N -0.914 5.914 15 Si 0.947 3.053 16 H -0.281 1.281 17 H -0.284 1.284 18 H -0.269 1.269 19 C -0.117 4.117 20 C 0.095 3.905 21 C -0.098 4.098 22 C -0.136 4.136 23 C 0.491 3.509 24 O -0.552 6.552 25 H 0.075 0.925 26 H 0.097 0.903 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.026 0.974 32 H 0.007 0.993 33 H 0.260 0.740 34 H 0.069 0.931 35 H 0.043 0.957 36 H 0.073 0.927 37 H 0.135 0.865 38 H 0.116 0.884 39 H 0.123 0.877 40 H 0.141 0.859 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.990 -16.152 -6.944 17.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.288 5.288 3 N -0.014 5.014 4 C -0.106 4.106 5 C 0.353 3.647 6 O -0.435 6.435 7 N -0.313 5.313 8 C -0.003 4.003 9 C -0.148 4.148 10 C 0.026 3.974 11 C -0.571 4.571 12 H 0.068 0.932 13 C -0.183 4.183 14 N -0.554 5.554 15 Si 0.774 3.226 16 H -0.207 1.207 17 H -0.209 1.209 18 H -0.194 1.194 19 C -0.155 4.155 20 C -0.027 4.027 21 C -0.138 4.138 22 C -0.175 4.175 23 C 0.280 3.720 24 O -0.427 6.427 25 H 0.093 0.907 26 H 0.116 0.884 27 H 0.106 0.894 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.045 0.955 32 H 0.025 0.975 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.062 0.938 36 H 0.092 0.908 37 H 0.152 0.848 38 H 0.134 0.866 39 H 0.141 0.859 40 H 0.159 0.841 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.534 -16.101 -6.944 17.887 hybrid contribution 0.567 0.657 0.853 1.217 sum -2.967 -15.444 -6.091 16.865 Atomic orbital electron populations 1.21913 0.73884 1.04699 1.04007 1.49358 1.08337 1.01312 1.69760 1.74876 1.09123 1.06731 1.10627 1.24854 0.92620 0.96701 0.96445 1.17656 0.84868 0.82903 0.79246 1.90809 1.18681 1.84684 1.49377 1.48215 1.27101 1.06786 1.49239 1.21628 0.98960 0.81352 0.98372 1.21680 0.99462 1.00028 0.93650 1.18641 0.92818 0.91613 0.94367 1.21562 1.47966 0.94146 0.93422 0.93208 1.25663 0.94981 0.98315 0.99323 1.69993 1.48865 1.08357 1.28158 0.85707 0.78077 0.77946 0.80894 1.20659 1.20938 1.19354 1.21914 1.00734 0.96849 0.96040 1.22788 0.84815 1.04468 0.90620 1.20945 1.02970 0.87725 1.02141 1.21929 0.88749 1.01805 1.05057 1.21838 0.92571 0.82914 0.74632 1.90718 1.71255 1.31293 1.49426 0.90653 0.88438 0.89387 0.90177 0.91217 0.91312 0.95529 0.97462 0.93039 0.91275 0.93835 0.90829 0.84827 0.86630 0.85915 0.84052 0.86311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.57 10.73 127.77 1.37 2.94 16 2 N -0.47 -9.79 3.86 -484.50 -1.87 -11.67 16 3 N -0.20 -4.55 7.20 -43.50 -0.31 -4.86 16 4 C 0.09 1.99 6.61 45.05 0.30 2.28 16 5 C 0.57 17.25 7.60 86.46 0.66 17.90 16 6 O -0.56 -19.48 15.77 -4.21 -0.07 -19.55 16 7 N -0.58 -19.23 2.98 -824.41 -2.46 -21.69 16 8 C 0.12 4.45 6.42 86.22 0.55 5.00 16 9 C -0.11 -4.96 5.19 30.53 0.16 -4.80 16 10 C 0.04 2.08 1.99 -11.51 -0.02 2.06 16 11 C -0.53 -28.28 8.48 25.60 0.22 -28.07 16 12 H 0.05 2.62 7.75 -2.91 -0.02 2.60 16 13 C 0.02 0.87 5.36 84.65 0.45 1.32 16 14 N -0.91 -51.06 11.59 21.45 0.25 -50.81 16 15 Si 0.95 42.65 29.54 68.60 2.03 44.68 16 16 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 17 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 19 C -0.12 -4.41 5.30 30.67 0.16 -4.25 16 20 C 0.10 2.92 5.80 86.36 0.50 3.42 16 21 C -0.10 -1.59 5.81 29.80 0.17 -1.42 16 22 C -0.14 -1.99 6.20 29.87 0.19 -1.80 16 23 C 0.49 10.53 7.55 87.68 0.66 11.19 16 24 O -0.55 -14.96 16.67 -2.96 -0.05 -15.01 16 25 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.09 1.43 7.41 -2.39 -0.02 1.41 16 28 H 0.08 2.97 7.01 -2.39 -0.02 2.96 16 29 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.07 3.53 6.37 -2.39 -0.02 3.52 16 31 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 34 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 35 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.14 3.61 4.24 -85.49 -0.36 3.25 16 38 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.12 1.89 7.65 -2.39 -0.02 1.88 16 40 H 0.14 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -65.35 330.28 3.57 -61.78 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: 0.68 Total: 11.36 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: 5.37 Total: 5.77 kcal Atomic # 7 Polarization: -84.63 SS G_CDS: -4.39 Total: -89.02 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -0.12 Total: -34.56 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -65.35 3.57 -61.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701297508.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.584 kcal (2) G-P(sol) polarization free energy of solvation -65.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds