Wall clock time and date at job start Tue Mar 31 2020 03:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 114.00056 * 2 1 4 4 C 1.52992 * 109.47167 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47353 * 65.00145 * 4 3 2 6 6 C 1.46497 * 119.99538 * 270.00064 * 5 4 3 7 7 C 1.50694 * 109.47260 * 269.99660 * 6 5 4 8 8 H 1.08005 * 120.00164 * 359.97438 * 7 6 5 9 9 C 1.37880 * 120.00258 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00108 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 119.99769 * 0.02562 * 9 7 6 12 12 H 1.48494 * 109.47144 * 90.00120 * 11 9 7 13 13 H 1.48500 * 109.46745 * 210.00195 * 11 9 7 14 14 H 1.48494 * 109.46878 * 329.99736 * 11 9 7 15 15 C 1.34770 * 120.00135 * 89.99663 * 5 4 3 16 16 O 1.21739 * 120.00334 * 0.02562 * 15 5 4 17 17 C 1.41826 * 120.00149 * 180.02562 * 15 5 4 18 18 C 1.35042 * 120.00358 * 173.08999 * 17 15 5 19 19 C 1.46965 * 119.99898 * 347.47004 * 18 17 15 20 20 C 1.41431 * 126.44485 * 314.09748 * 19 18 17 21 21 N 1.30446 * 108.04361 * 179.81248 * 20 19 18 22 22 N 1.39924 * 108.95973 * 0.44676 * 21 20 19 23 23 C 1.46503 * 125.74164 * 179.71104 * 22 21 20 24 24 C 1.34399 * 108.52023 * 359.70895 * 22 21 20 25 25 H 1.08996 * 109.47450 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47042 * 300.00294 * 1 2 3 27 27 H 1.08999 * 109.46788 * 60.00214 * 1 2 3 28 28 H 1.09000 * 109.47237 * 59.99684 * 3 2 1 29 29 H 1.09005 * 109.47379 * 299.99920 * 3 2 1 30 30 H 1.08999 * 109.47526 * 304.99842 * 4 3 2 31 31 H 1.09010 * 109.47350 * 185.00005 * 4 3 2 32 32 H 1.09002 * 109.47363 * 29.99899 * 6 5 4 33 33 H 1.09004 * 109.47024 * 149.99726 * 6 5 4 34 34 H 0.97000 * 119.99692 * 180.02562 * 10 9 7 35 35 H 1.08002 * 119.99571 * 353.09545 * 17 15 5 36 36 H 1.07999 * 120.00025 * 167.47486 * 18 17 15 37 37 H 1.07999 * 125.97823 * 359.96185 * 20 19 18 38 38 H 1.08999 * 109.46977 * 269.99706 * 23 22 21 39 39 H 1.08997 * 109.46758 * 29.99916 * 23 22 21 40 40 H 1.08999 * 109.47069 * 150.00039 * 23 22 21 41 41 H 1.07991 * 126.32123 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.1063 -0.8926 -1.3402 7 6 5.5017 -1.2982 -0.9411 8 1 6.2203 -0.5462 -0.6504 9 6 5.8613 -2.6292 -0.9481 10 7 7.0793 -2.9831 -0.6002 11 14 4.6190 -3.9297 -1.4529 12 1 4.7059 -4.1550 -2.9181 13 1 4.9125 -5.1982 -0.7387 14 1 3.2511 -3.4698 -1.1030 15 6 4.2634 1.3328 -2.3200 16 8 4.1561 2.5432 -2.2456 17 6 4.6900 0.7319 -3.5317 18 6 4.8429 1.4854 -4.6419 19 6 4.3125 2.8556 -4.6788 20 6 3.0311 3.2723 -4.2494 21 7 2.9399 4.5596 -4.4398 22 7 4.1353 5.0218 -5.0012 23 6 4.4274 6.4093 -5.3697 24 6 4.9706 3.9788 -5.1455 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6886 1.8464 0.8899 29 1 1.6887 1.8464 -0.8900 30 1 3.8508 0.5685 0.8427 31 1 3.9785 2.1766 0.0902 32 1 3.3858 -1.3632 -0.6713 33 1 3.9139 -1.2123 -2.3644 34 1 7.3323 -3.9195 -0.6055 35 1 4.8927 -0.3283 -3.5666 36 1 5.3548 1.0811 -5.5027 37 1 2.2633 2.6364 -3.8340 38 1 4.1240 6.5826 -6.4022 39 1 3.8787 7.0831 -4.7117 40 1 5.4969 6.5945 -5.2694 41 1 5.9711 4.0119 -5.5507 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701324686.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:29 Heat of formation + Delta-G solvation = 36.840457 kcal Electronic energy + Delta-G solvation = -23924.062773 eV Core-core repulsion = 20421.652513 eV Total energy + Delta-G solvation = -3502.410260 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.79547 -39.23808 -37.46683 -35.03957 -33.70982 -32.51849 -32.27416 -30.22075 -29.03303 -27.52700 -26.53434 -25.88820 -23.69127 -22.40821 -21.60007 -20.69549 -19.93543 -17.77179 -16.95542 -16.92012 -16.28079 -15.89935 -15.67703 -15.21159 -15.00449 -14.66061 -14.18591 -14.08713 -13.85234 -13.32599 -12.98853 -12.94761 -12.54130 -12.52292 -12.33797 -12.04499 -11.96802 -11.77550 -11.48272 -11.40794 -10.91468 -10.73739 -10.45239 -10.40006 -10.13456 -9.51434 -9.48976 -9.37733 -9.12667 -8.85359 -8.59477 -7.58257 -7.45033 -6.11208 -4.11188 1.55654 2.26922 2.74725 3.26271 3.34957 3.38743 3.39680 3.98251 4.14142 4.23685 4.37716 4.64919 5.02072 5.08798 5.21104 5.26444 5.33337 5.36325 5.42232 5.48756 5.62436 5.64047 5.68919 5.71841 5.79135 5.93878 6.01983 6.16459 6.28946 6.40903 6.64206 6.81341 6.84445 6.97591 7.02488 7.25139 7.42667 7.52727 7.61275 8.02400 8.29201 8.55598 8.94417 9.11818 9.49527 11.01731 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.014803 B = 0.005072 C = 0.004158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.057267 B = 5518.677496 C = 6732.114589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.379 6.379 3 C 0.049 3.951 4 C 0.123 3.877 5 N -0.580 5.580 6 C 0.211 3.789 7 C -0.536 4.536 8 H 0.076 0.924 9 C 0.075 3.925 10 N -0.895 5.895 11 Si 0.869 3.131 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.260 1.260 15 C 0.545 3.455 16 O -0.564 6.564 17 C -0.197 4.197 18 C -0.009 4.009 19 C -0.194 4.194 20 C 0.120 3.880 21 N -0.315 5.315 22 N -0.380 5.380 23 C 0.107 3.893 24 C 0.058 3.942 25 H 0.081 0.919 26 H 0.035 0.965 27 H 0.036 0.964 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.046 0.954 33 H 0.027 0.973 34 H 0.265 0.735 35 H 0.140 0.860 36 H 0.126 0.874 37 H 0.171 0.829 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.380 11.620 -7.597 16.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.298 6.298 3 C -0.028 4.028 4 C -0.001 4.001 5 N -0.310 5.310 6 C 0.089 3.911 7 C -0.575 4.575 8 H 0.094 0.906 9 C -0.128 4.128 10 N -0.534 5.534 11 Si 0.695 3.305 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.184 1.184 15 C 0.337 3.663 16 O -0.447 6.447 17 C -0.218 4.218 18 C -0.030 4.030 19 C -0.205 4.205 20 C -0.068 4.068 21 N -0.135 5.135 22 N -0.162 5.162 23 C -0.035 4.035 24 C -0.088 4.088 25 H 0.100 0.900 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.064 0.936 33 H 0.045 0.955 34 H 0.074 0.926 35 H 0.158 0.842 36 H 0.143 0.857 37 H 0.188 0.812 38 H 0.087 0.913 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -8.916 13.083 -7.417 17.484 hybrid contribution 0.013 -1.502 -0.111 1.506 sum -8.903 11.581 -7.528 16.433 Atomic orbital electron populations 1.22680 0.82184 1.02268 0.99328 1.88020 1.18668 1.27848 1.95244 1.23041 0.95369 0.84630 0.99805 1.21292 0.90757 0.99766 0.88274 1.47825 1.63719 1.08782 1.10625 1.19840 0.97975 0.75789 0.97457 1.21460 0.96076 0.93630 1.46321 0.90609 1.24862 0.95048 0.98288 0.94600 1.69905 1.18210 1.17347 1.47895 0.86944 0.82758 0.81635 0.79132 1.19979 1.21105 1.18406 1.17184 0.77623 0.86514 0.84931 1.90773 1.55225 1.13978 1.84685 1.22349 1.04872 1.01628 0.92974 1.21545 0.93982 0.90654 0.96820 1.19275 0.96011 0.93937 1.11308 1.23622 0.96609 0.91542 0.94986 1.76980 1.03725 1.12664 1.20177 1.47984 1.11423 1.07321 1.49454 1.21728 1.02034 0.78666 1.01090 1.22792 0.96699 0.87301 1.01998 0.90024 0.94632 0.94559 0.93254 0.93289 0.89591 0.89331 0.93639 0.95500 0.92552 0.84241 0.85657 0.81210 0.91299 0.89692 0.89908 0.81171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.38 -6.56 9.53 -35.23 -0.34 -6.90 16 3 C 0.05 0.80 6.28 37.15 0.23 1.03 16 4 C 0.12 2.31 5.81 -4.04 -0.02 2.28 16 5 N -0.58 -12.26 2.42 -178.41 -0.43 -12.69 16 6 C 0.21 4.86 3.69 -5.20 -0.02 4.84 16 7 C -0.54 -14.54 9.93 -34.44 -0.34 -14.88 16 8 H 0.08 2.30 8.06 -52.48 -0.42 1.88 16 9 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 10 N -0.90 -26.55 13.96 55.43 0.77 -25.78 16 11 Si 0.87 20.38 27.47 -169.99 -4.67 15.71 16 12 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 13 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.26 -5.89 6.54 56.52 0.37 -5.52 16 15 C 0.55 11.29 7.06 -14.89 -0.11 11.18 16 16 O -0.56 -12.17 11.96 5.15 0.06 -12.11 16 17 C -0.20 -3.69 8.99 -39.35 -0.35 -4.05 16 18 C -0.01 -0.13 10.13 -37.18 -0.38 -0.51 16 19 C -0.19 -3.14 4.45 -105.13 -0.47 -3.61 16 20 C 0.12 2.05 9.13 -16.93 -0.15 1.90 16 21 N -0.31 -5.35 12.49 30.89 0.39 -4.97 16 22 N -0.38 -5.34 3.98 -67.50 -0.27 -5.61 16 23 C 0.11 0.94 11.44 59.85 0.68 1.62 16 24 C 0.06 0.81 11.52 -16.41 -0.19 0.62 16 25 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.09 1.65 8.07 -51.93 -0.42 1.23 16 31 H 0.09 1.63 7.42 -51.92 -0.39 1.25 16 32 H 0.05 1.08 6.18 -51.93 -0.32 0.76 16 33 H 0.03 0.60 5.61 -51.93 -0.29 0.31 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.14 2.69 6.22 -52.49 -0.33 2.36 16 36 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.17 2.83 7.95 -52.49 -0.42 2.42 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.17 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 346.54 15.07 5.22 5.22 Total: -1.00 -34.21 346.54 -5.34 -39.55 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -5.98 Total: 3.63 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -0.10 Total: 3.94 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: 0.46 Total: -49.04 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.27 Total: -19.01 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.67 Total: 15.71 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.21 -5.34 -39.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701324686.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.391 kcal (2) G-P(sol) polarization free energy of solvation -34.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds