Wall clock time and date at job start Tue Mar 31 2020 03:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 114.00056 * 2 1 4 4 C 1.52992 * 109.47167 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47353 * 65.00145 * 4 3 2 6 6 C 1.46497 * 119.99538 * 270.00064 * 5 4 3 7 7 C 1.50694 * 109.47260 * 269.99660 * 6 5 4 8 8 H 1.08005 * 120.00164 * 359.97438 * 7 6 5 9 9 C 1.37880 * 120.00258 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00108 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 119.99769 * 0.02562 * 9 7 6 12 12 H 1.48494 * 109.47144 * 90.00120 * 11 9 7 13 13 H 1.48500 * 109.46745 * 210.00195 * 11 9 7 14 14 H 1.48494 * 109.46878 * 329.99736 * 11 9 7 15 15 C 1.34770 * 120.00135 * 89.99663 * 5 4 3 16 16 O 1.21739 * 120.00334 * 0.02562 * 15 5 4 17 17 C 1.41826 * 120.00149 * 180.02562 * 15 5 4 18 18 C 1.35042 * 120.00358 * 173.08999 * 17 15 5 19 19 C 1.46965 * 119.99898 * 347.47004 * 18 17 15 20 20 C 1.41431 * 126.44485 * 314.09748 * 19 18 17 21 21 N 1.30446 * 108.04361 * 179.81248 * 20 19 18 22 22 N 1.39924 * 108.95973 * 0.44676 * 21 20 19 23 23 C 1.46503 * 125.74164 * 179.71104 * 22 21 20 24 24 C 1.34399 * 108.52023 * 359.70895 * 22 21 20 25 25 H 1.08996 * 109.47450 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47042 * 300.00294 * 1 2 3 27 27 H 1.08999 * 109.46788 * 60.00214 * 1 2 3 28 28 H 1.09000 * 109.47237 * 59.99684 * 3 2 1 29 29 H 1.09005 * 109.47379 * 299.99920 * 3 2 1 30 30 H 1.08999 * 109.47526 * 304.99842 * 4 3 2 31 31 H 1.09010 * 109.47350 * 185.00005 * 4 3 2 32 32 H 1.09002 * 109.47363 * 29.99899 * 6 5 4 33 33 H 1.09004 * 109.47024 * 149.99726 * 6 5 4 34 34 H 0.97000 * 119.99692 * 180.02562 * 10 9 7 35 35 H 1.08002 * 119.99571 * 353.09545 * 17 15 5 36 36 H 1.07999 * 120.00025 * 167.47486 * 18 17 15 37 37 H 1.07999 * 125.97823 * 359.96185 * 20 19 18 38 38 H 1.08999 * 109.46977 * 269.99706 * 23 22 21 39 39 H 1.08997 * 109.46758 * 29.99916 * 23 22 21 40 40 H 1.08999 * 109.47069 * 150.00039 * 23 22 21 41 41 H 1.07991 * 126.32123 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.1063 -0.8926 -1.3402 7 6 5.5017 -1.2982 -0.9411 8 1 6.2203 -0.5462 -0.6504 9 6 5.8613 -2.6292 -0.9481 10 7 7.0793 -2.9831 -0.6002 11 14 4.6190 -3.9297 -1.4529 12 1 4.7059 -4.1550 -2.9181 13 1 4.9125 -5.1982 -0.7387 14 1 3.2511 -3.4698 -1.1030 15 6 4.2634 1.3328 -2.3200 16 8 4.1561 2.5432 -2.2456 17 6 4.6900 0.7319 -3.5317 18 6 4.8429 1.4854 -4.6419 19 6 4.3125 2.8556 -4.6788 20 6 3.0311 3.2723 -4.2494 21 7 2.9399 4.5596 -4.4398 22 7 4.1353 5.0218 -5.0012 23 6 4.4274 6.4093 -5.3697 24 6 4.9706 3.9788 -5.1455 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6886 1.8464 0.8899 29 1 1.6887 1.8464 -0.8900 30 1 3.8508 0.5685 0.8427 31 1 3.9785 2.1766 0.0902 32 1 3.3858 -1.3632 -0.6713 33 1 3.9139 -1.2123 -2.3644 34 1 7.3323 -3.9195 -0.6055 35 1 4.8927 -0.3283 -3.5666 36 1 5.3548 1.0811 -5.5027 37 1 2.2633 2.6364 -3.8340 38 1 4.1240 6.5826 -6.4022 39 1 3.8787 7.0831 -4.7117 40 1 5.4969 6.5945 -5.2694 41 1 5.9711 4.0119 -5.5507 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701324686.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:29 Heat of formation + Delta-G solvation = 13.243348 kcal Electronic energy + Delta-G solvation = -23925.086021 eV Core-core repulsion = 20421.652513 eV Total energy + Delta-G solvation = -3503.433508 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.97560 -40.74953 -38.74025 -36.65311 -35.03175 -34.43508 -33.49133 -31.68208 -30.29877 -29.27640 -27.54690 -27.02002 -25.05001 -24.30308 -22.95262 -21.79093 -21.24976 -19.22584 -19.00194 -18.37457 -17.62038 -17.17248 -16.96899 -16.52179 -16.23798 -15.97247 -15.83885 -15.33238 -15.18269 -14.77707 -14.50481 -14.24303 -13.90342 -13.73381 -13.53837 -13.41705 -13.36813 -13.08670 -12.88326 -12.74132 -12.58506 -12.39337 -12.00548 -11.90587 -11.65274 -11.58519 -10.84259 -10.72797 -10.60118 -10.38996 -10.19553 -9.23761 -8.70357 -8.25296 -6.30956 0.24193 1.11073 1.42327 1.44934 1.56844 1.79414 2.12204 2.39422 2.47550 2.70168 2.93659 3.09768 3.71707 4.03647 4.10890 4.15724 4.28309 4.31054 4.40144 4.40520 4.48465 4.54098 4.56299 4.61419 4.71051 4.77491 4.84442 4.85380 4.88205 4.93206 5.01156 5.09142 5.50442 5.52063 5.55575 5.75211 5.90490 6.24435 6.25662 6.30433 6.70924 6.82498 6.84850 7.32903 7.55139 8.91341 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.014803 B = 0.005072 C = 0.004158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.057267 B = 5518.677496 C = 6732.114589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.409 6.409 3 C 0.062 3.938 4 C 0.119 3.881 5 N -0.592 5.592 6 C 0.228 3.772 7 C -0.536 4.536 8 H 0.027 0.973 9 C 0.019 3.981 10 N -0.945 5.945 11 Si 0.940 3.060 12 H -0.258 1.258 13 H -0.285 1.285 14 H -0.245 1.245 15 C 0.544 3.456 16 O -0.579 6.579 17 C -0.246 4.246 18 C 0.037 3.963 19 C -0.234 4.234 20 C 0.107 3.893 21 N -0.346 5.346 22 N -0.378 5.378 23 C 0.095 3.905 24 C 0.078 3.922 25 H 0.093 0.907 26 H 0.055 0.945 27 H 0.043 0.957 28 H 0.077 0.923 29 H 0.043 0.957 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.042 0.958 33 H 0.040 0.960 34 H 0.267 0.733 35 H 0.129 0.871 36 H 0.163 0.837 37 H 0.161 0.839 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.112 0.888 41 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.362 12.355 -9.508 18.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.329 6.329 3 C -0.016 4.016 4 C -0.005 4.005 5 N -0.321 5.321 6 C 0.106 3.894 7 C -0.575 4.575 8 H 0.045 0.955 9 C -0.179 4.179 10 N -0.585 5.585 11 Si 0.762 3.238 12 H -0.182 1.182 13 H -0.211 1.211 14 H -0.169 1.169 15 C 0.338 3.662 16 O -0.463 6.463 17 C -0.267 4.267 18 C 0.016 3.984 19 C -0.246 4.246 20 C -0.080 4.080 21 N -0.167 5.167 22 N -0.158 5.158 23 C -0.045 4.045 24 C -0.071 4.071 25 H 0.111 0.889 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.095 0.905 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.147 0.853 36 H 0.180 0.820 37 H 0.178 0.822 38 H 0.110 0.890 39 H 0.102 0.898 40 H 0.131 0.869 41 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -9.931 13.866 -9.331 19.441 hybrid contribution 0.394 -1.483 0.419 1.590 sum -9.538 12.383 -8.912 17.992 Atomic orbital electron populations 1.22892 0.79898 1.03508 1.00633 1.87957 1.21219 1.28221 1.95494 1.22856 0.93262 0.84703 1.00750 1.21371 0.92949 0.99022 0.87129 1.47864 1.64508 1.08065 1.11663 1.19507 0.95042 0.77187 0.97685 1.21584 0.97163 0.92823 1.45882 0.95496 1.25750 0.97009 1.00705 0.94436 1.70060 1.20641 1.18062 1.49711 0.85822 0.80388 0.78036 0.79513 1.18204 1.21075 1.16873 1.17499 0.76968 0.86401 0.85346 1.90750 1.56138 1.14361 1.85069 1.22189 1.09389 1.01606 0.93523 1.21945 0.90138 0.89964 0.96392 1.19495 0.96397 0.94984 1.13698 1.23593 0.97243 0.91787 0.95353 1.76906 1.05729 1.12639 1.21430 1.48458 1.10369 1.09158 1.47851 1.22171 1.04058 0.75915 1.02345 1.23427 0.97744 0.86313 0.99572 0.88893 0.92685 0.93842 0.90520 0.93890 0.90860 0.89672 0.93958 0.94199 0.92359 0.85333 0.81979 0.82196 0.88975 0.89759 0.86944 0.77004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 11.01 113.37 1.25 1.89 16 2 O -0.41 -13.86 9.53 -148.98 -1.42 -15.28 16 3 C 0.06 1.99 6.28 71.98 0.45 2.44 16 4 C 0.12 4.59 5.81 86.38 0.50 5.09 16 5 N -0.59 -25.72 2.42 -836.57 -2.02 -27.75 16 6 C 0.23 10.68 3.69 85.63 0.32 11.00 16 7 C -0.54 -30.10 9.93 25.60 0.25 -29.85 16 8 H 0.03 1.73 8.06 -2.91 -0.02 1.71 16 9 C 0.02 1.09 5.47 84.65 0.46 1.55 16 10 N -0.94 -57.63 13.96 21.45 0.30 -57.33 16 11 Si 0.94 42.01 27.47 68.60 1.88 43.89 16 12 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 13 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 14 H -0.25 -10.32 6.54 99.48 0.65 -9.67 16 15 C 0.54 23.02 7.06 85.13 0.60 23.62 16 16 O -0.58 -25.41 11.96 -4.47 -0.05 -25.47 16 17 C -0.25 -9.24 8.99 22.42 0.20 -9.03 16 18 C 0.04 1.10 10.13 23.82 0.24 1.34 16 19 C -0.23 -7.21 4.45 -20.19 -0.09 -7.30 16 20 C 0.11 3.63 9.13 85.68 0.78 4.41 16 21 N -0.35 -11.45 12.49 -56.18 -0.70 -12.15 16 22 N -0.38 -9.63 3.98 -367.45 -1.46 -11.10 16 23 C 0.09 1.34 11.44 127.77 1.46 2.81 16 24 C 0.08 1.91 11.52 84.31 0.97 2.88 16 25 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.07 2.95 8.07 -2.39 -0.02 2.93 16 31 H 0.09 3.27 7.42 -2.38 -0.02 3.25 16 32 H 0.04 2.02 6.18 -2.39 -0.01 2.00 16 33 H 0.04 1.78 5.61 -2.39 -0.01 1.77 16 34 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 35 H 0.13 5.03 6.22 -2.91 -0.02 5.01 16 36 H 0.16 3.53 8.06 -2.91 -0.02 3.50 16 37 H 0.16 5.53 7.95 -2.91 -0.02 5.50 16 38 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.21 3.24 8.06 -2.92 -0.02 3.22 16 Total: -1.00 -77.14 346.54 4.89 -72.25 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: 0.96 Total: 22.08 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: 7.41 Total: 10.85 kcal Atomic # 7 Polarization: -104.44 SS G_CDS: -3.89 Total: -108.33 kcal Atomic # 8 Polarization: -39.28 SS G_CDS: -1.47 Total: -40.75 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 1.88 Total: 43.89 kcal Total: -77.14 4.89 -72.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701324686.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.498 kcal (2) G-P(sol) polarization free energy of solvation -77.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds