Wall clock time and date at job start Tue Mar 31 2020 03:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99753 * 2 1 4 4 H 1.48500 * 109.47265 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47260 * 299.99830 * 3 2 1 6 6 H 1.48501 * 109.47346 * 59.99830 * 3 2 1 7 7 C 1.38814 * 119.99995 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99562 * 163.07234 * 7 2 1 9 9 N 1.36934 * 120.00000 * 343.07142 * 7 2 1 10 10 C 1.46925 * 120.63132 * 331.84438 * 9 7 2 11 11 C 1.53190 * 108.77829 * 233.58664 * 10 9 7 12 12 C 1.53039 * 109.31517 * 305.37295 * 11 10 9 13 13 N 1.46496 * 109.46049 * 181.38739 * 12 11 10 14 14 C 1.34772 * 120.00333 * 154.97290 * 13 12 11 15 15 O 1.21284 * 120.00097 * 359.97438 * 14 13 12 16 16 C 1.50705 * 120.00460 * 179.97438 * 14 13 12 17 17 C 1.52999 * 109.47443 * 179.97438 * 16 14 13 18 18 N 1.46493 * 109.47036 * 180.02562 * 17 16 14 19 19 C 1.34429 * 126.82319 * 125.00280 * 18 17 16 20 20 N 1.30830 * 108.07815 * 179.97438 * 19 18 17 21 21 C 1.33247 * 109.83106 * 359.97438 * 20 19 18 22 22 N 1.30712 * 108.94278 * 0.26971 * 21 20 19 23 23 C 1.53035 * 109.52959 * 61.36780 * 12 11 10 24 24 C 1.46924 * 120.62863 * 151.83037 * 9 7 2 25 25 H 0.96996 * 120.00532 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.58221 * 113.80168 * 10 9 7 27 27 H 1.08996 * 109.70707 * 353.45467 * 10 9 7 28 28 H 1.08998 * 109.49887 * 185.41351 * 11 10 9 29 29 H 1.08999 * 109.49551 * 65.31775 * 11 10 9 30 30 H 1.09004 * 109.45615 * 301.35807 * 12 11 10 31 31 H 0.96998 * 119.99802 * 334.96401 * 13 12 11 32 32 H 1.08993 * 109.46844 * 59.99427 * 16 14 13 33 33 H 1.09004 * 109.46631 * 299.99905 * 16 14 13 34 34 H 1.08997 * 109.46875 * 59.99514 * 17 16 14 35 35 H 1.09003 * 109.46710 * 300.00226 * 17 16 14 36 36 H 1.08003 * 125.96119 * 359.96515 * 19 18 17 37 37 H 1.07999 * 125.52479 * 179.97438 * 21 20 19 38 38 H 1.08996 * 109.50129 * 58.58048 * 23 12 11 39 39 H 1.09008 * 109.49833 * 178.68014 * 23 12 11 40 40 H 1.09000 * 109.58647 * 246.19725 * 24 9 7 41 41 H 1.09002 * 109.58882 * 6.48125 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0552 -1.2225 -0.2718 9 7 1.3701 -2.3622 0.3464 10 6 0.2262 -2.3398 1.2681 11 6 0.4975 -3.3188 2.4147 12 6 0.8122 -4.7005 1.8368 13 7 1.0397 -5.6471 2.9314 14 6 0.8359 -6.9649 2.7361 15 8 0.4637 -7.3672 1.6542 16 6 1.0705 -7.9388 3.8620 17 6 0.7678 -9.3588 3.3796 18 7 0.9953 -10.3054 4.4742 19 6 0.1180 -11.2001 4.9611 20 7 0.7022 -11.8548 5.9315 21 6 1.9474 -11.4085 6.0925 22 7 2.1718 -10.4554 5.2265 23 6 2.0677 -4.6169 0.9657 24 6 1.8139 -3.6529 -0.1975 25 1 -0.4851 0.8400 -0.0004 26 1 -0.6769 -2.6405 0.7369 27 1 0.0967 -1.3345 1.6688 28 1 -0.3830 -3.3836 3.0538 29 1 1.3473 -2.9672 2.9998 30 1 -0.0279 -5.0407 1.2312 31 1 1.3372 -5.3254 3.7968 32 1 0.4161 -7.6922 4.6980 33 1 2.1101 -7.8780 4.1842 34 1 1.4219 -9.6056 2.5434 35 1 -0.2719 -9.4192 3.0576 36 1 -0.8927 -11.3520 4.6121 37 1 2.6547 -11.7718 6.8233 38 1 2.9025 -4.2529 1.5646 39 1 2.3048 -5.6058 0.5733 40 1 1.0403 -4.0607 -0.8482 41 1 2.7333 -3.5131 -0.7661 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706157721.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:30 Heat of formation + Delta-G solvation = 49.629978 kcal Electronic energy + Delta-G solvation = -22914.618729 eV Core-core repulsion = 19445.055815 eV Total energy + Delta-G solvation = -3469.562914 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.97512 -41.04188 -39.04042 -36.15611 -35.70253 -33.97083 -32.19506 -32.08198 -31.60196 -30.78339 -27.18322 -25.80654 -23.97820 -23.61056 -22.89617 -22.40781 -21.35892 -20.84539 -18.95216 -18.54932 -17.44835 -17.26210 -16.93546 -16.77670 -16.23348 -15.76107 -15.56057 -15.36813 -15.09893 -14.93514 -14.79961 -14.49942 -14.13802 -14.05754 -13.54805 -13.24132 -13.05077 -12.99155 -12.64324 -12.53883 -12.27977 -12.21963 -12.00824 -11.88482 -11.57185 -11.37276 -11.09779 -10.91743 -10.77254 -10.62056 -10.57827 -10.02365 -8.72127 -7.89528 -5.35146 0.70204 1.31545 1.46428 1.48710 1.59122 1.59709 2.03258 2.22920 2.50597 3.26465 3.48600 3.55730 3.61137 3.67874 3.83629 3.91671 4.05054 4.15530 4.22563 4.32434 4.37466 4.45161 4.63771 4.68734 4.77332 4.81798 4.85654 5.01918 5.04201 5.14447 5.28731 5.29566 5.46242 5.49555 5.53327 5.63538 5.70487 5.89378 6.37639 6.55720 7.13266 7.13753 7.23228 7.82787 8.35105 9.17601 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.048575 B = 0.002467 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.294205 B =11348.600495 C =11399.375927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.050 4.050 3 Si 0.968 3.032 4 H -0.267 1.267 5 H -0.294 1.294 6 H -0.287 1.287 7 C -0.262 4.262 8 H 0.066 0.934 9 N -0.610 5.610 10 C 0.177 3.823 11 C -0.129 4.129 12 C 0.162 3.838 13 N -0.711 5.711 14 C 0.518 3.482 15 O -0.580 6.580 16 C -0.137 4.137 17 C 0.147 3.853 18 N -0.383 5.383 19 C 0.262 3.738 20 N -0.579 5.579 21 C 0.192 3.808 22 N -0.351 5.351 23 C -0.124 4.124 24 C 0.144 3.856 25 H 0.251 0.749 26 H -0.005 1.005 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.414 0.586 32 H 0.118 0.882 33 H 0.110 0.890 34 H 0.088 0.912 35 H 0.130 0.870 36 H 0.257 0.743 37 H 0.240 0.760 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.009 0.991 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.812 -19.090 12.750 22.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.245 4.245 3 Si 0.796 3.204 4 H -0.191 1.191 5 H -0.221 1.221 6 H -0.214 1.214 7 C -0.392 4.392 8 H 0.084 0.916 9 N -0.334 5.334 10 C 0.051 3.949 11 C -0.169 4.169 12 C 0.057 3.943 13 N -0.362 5.362 14 C 0.305 3.695 15 O -0.461 6.461 16 C -0.177 4.177 17 C 0.025 3.975 18 N -0.173 5.173 19 C -0.034 4.034 20 N -0.307 5.307 21 C -0.110 4.110 22 N -0.179 5.179 23 C -0.164 4.164 24 C 0.018 3.982 25 H 0.060 0.940 26 H 0.014 0.986 27 H 0.080 0.920 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.250 0.750 32 H 0.136 0.864 33 H 0.129 0.871 34 H 0.106 0.894 35 H 0.148 0.852 36 H 0.273 0.727 37 H 0.255 0.745 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.027 0.973 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.981 -19.047 12.039 22.554 hybrid contribution 0.177 1.347 -0.200 1.373 sum 1.158 -17.701 11.838 21.326 Atomic orbital electron populations 1.70180 1.06652 1.25904 1.55383 1.25813 0.96062 1.01519 1.01149 0.85203 0.78599 0.79788 0.76808 1.19148 1.22113 1.21402 1.19537 0.92837 0.85878 1.40992 0.91583 1.44361 1.35985 1.02209 1.50796 1.20570 0.87719 0.97797 0.88800 1.22252 1.01945 0.93812 0.98852 1.20644 0.97187 0.88395 0.88049 1.46073 1.68220 1.06171 1.15724 1.20780 0.76133 0.83285 0.89263 1.90729 1.48205 1.78794 1.28323 1.21751 1.06338 0.92232 0.97388 1.21584 1.05352 0.85296 0.85226 1.50661 1.09511 1.29397 1.27760 1.26913 0.98994 0.86868 0.90654 1.70590 1.08584 1.30922 1.20607 1.26576 0.94062 0.92250 0.98119 1.77994 1.06495 1.23065 1.10380 1.22171 0.97837 0.98684 0.97735 1.20973 0.97346 0.85971 0.93956 0.93996 0.98642 0.91985 0.90364 0.91325 0.91988 0.74957 0.86353 0.87143 0.89413 0.85180 0.72712 0.74451 0.91718 0.91991 0.97350 0.92570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.54 11.19 21.65 0.24 -54.30 16 2 C -0.05 -2.75 4.92 84.86 0.42 -2.34 16 3 Si 0.97 44.12 29.59 68.60 2.03 46.15 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 6 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 7 C -0.26 -14.25 9.58 84.03 0.81 -13.44 16 8 H 0.07 3.51 7.89 -2.91 -0.02 3.49 16 9 N -0.61 -30.25 2.99 -699.10 -2.09 -32.34 16 10 C 0.18 8.25 5.30 86.36 0.46 8.70 16 11 C -0.13 -4.34 5.55 30.67 0.17 -4.17 16 12 C 0.16 5.06 2.42 45.02 0.11 5.17 16 13 N -0.71 -15.92 5.08 -442.41 -2.25 -18.17 16 14 C 0.52 11.41 7.79 87.66 0.68 12.09 16 15 O -0.58 -17.42 15.64 -3.04 -0.05 -17.47 16 16 C -0.14 -1.91 5.91 29.85 0.18 -1.73 16 17 C 0.15 2.02 5.84 86.38 0.50 2.52 16 18 N -0.38 -5.94 3.69 -352.08 -1.30 -7.24 16 19 C 0.26 3.42 12.63 180.36 2.28 5.70 16 20 N -0.58 -10.37 11.19 -204.00 -2.28 -12.66 16 21 C 0.19 3.26 13.03 180.76 2.36 5.61 16 22 N -0.35 -6.81 12.57 -61.24 -0.77 -7.58 16 23 C -0.12 -4.21 5.65 30.67 0.17 -4.03 16 24 C 0.14 6.06 6.52 86.36 0.56 6.63 16 25 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 26 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 27 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 28 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.06 2.24 7.58 -2.38 -0.02 2.23 16 31 H 0.41 6.80 8.60 -92.71 -0.80 6.01 16 32 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.09 1.44 8.10 -2.39 -0.02 1.42 16 35 H 0.13 1.30 8.04 -2.39 -0.02 1.28 16 36 H 0.26 0.89 8.06 -2.91 -0.02 0.86 16 37 H 0.24 2.35 8.06 -2.91 -0.02 2.32 16 38 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 40 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 41 H 0.06 2.32 7.93 -2.39 -0.02 2.31 16 Total: -1.00 -73.32 342.16 2.46 -70.86 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.24 Total: 12.02 kcal Atomic # 6 Polarization: 12.02 SS G_CDS: 8.69 Total: 20.71 kcal Atomic # 7 Polarization: -123.83 SS G_CDS: -8.45 Total: -132.28 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.05 Total: -17.47 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -73.32 2.46 -70.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706157721.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.489 kcal (2) G-P(sol) polarization free energy of solvation -73.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds