Wall clock time and date at job start Tue Mar 31 2020 03:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.39868 * 119.79679 * 2 1 4 4 C 1.29693 * 121.14298 * 199.17766 * 3 2 1 5 5 C 1.46725 * 119.55049 * 180.08713 * 4 3 2 6 6 O 1.21660 * 120.00560 * 170.56961 * 5 4 3 7 7 N 1.34784 * 120.00042 * 350.56010 * 5 4 3 8 8 C 1.46927 * 120.62830 * 352.24168 * 7 5 4 9 9 C 1.53185 * 108.89445 * 233.55621 * 8 7 5 10 10 C 1.53077 * 109.29230 * 305.57904 * 9 8 7 11 11 C 1.53036 * 109.65890 * 61.15532 * 10 9 8 12 12 H 1.08998 * 109.50072 * 58.65028 * 11 10 9 13 13 C 1.50705 * 109.49749 * 178.74821 * 11 10 9 14 14 H 1.07998 * 119.99794 * 359.83182 * 13 11 10 15 15 C 1.37874 * 119.99693 * 179.83911 * 13 11 10 16 16 N 1.31506 * 120.00491 * 359.97438 * 15 13 11 17 17 Si 1.86804 * 119.99860 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46778 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46986 * 119.99364 * 17 15 13 20 20 H 1.48492 * 109.47492 * 239.99921 * 17 15 13 21 21 C 1.46925 * 120.63198 * 172.25829 * 7 5 4 22 22 C 1.50549 * 120.89972 * 0.35531 * 4 3 2 23 23 C 1.53286 * 109.45064 * 325.45605 * 22 4 3 24 24 C 1.34750 * 119.80168 * 180.02562 * 2 1 3 25 25 O 1.21250 * 120.12005 * 359.74798 * 24 2 1 26 26 H 1.08996 * 109.47740 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.46759 * 120.00325 * 1 2 3 28 28 H 1.09005 * 109.46974 * 239.99857 * 1 2 3 29 29 H 1.09001 * 109.58744 * 353.41591 * 8 7 5 30 30 H 1.09002 * 109.58470 * 113.69687 * 8 7 5 31 31 H 1.09001 * 109.49705 * 65.38932 * 9 8 7 32 32 H 1.09004 * 109.49975 * 185.48785 * 9 8 7 33 33 H 1.09001 * 109.34961 * 301.12576 * 10 9 8 34 34 H 1.09001 * 109.43998 * 181.23726 * 10 9 8 35 35 H 0.97008 * 120.00669 * 180.02562 * 16 15 13 36 36 H 1.08996 * 109.58590 * 246.15912 * 21 7 5 37 37 H 1.08999 * 109.58295 * 6.59026 * 21 7 5 38 38 H 1.08998 * 109.44429 * 85.61706 * 22 4 3 39 39 H 1.09004 * 109.44557 * 205.53019 * 22 4 3 40 40 H 1.09001 * 109.70449 * 287.77116 * 23 22 4 41 41 H 1.09001 * 109.42929 * 167.55635 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.1600 1.2138 0.0000 4 6 3.4031 1.2748 -0.3646 5 6 4.0991 2.5664 -0.3494 6 8 5.3025 2.6112 -0.5221 7 7 3.4051 3.7035 -0.1443 8 6 1.9365 3.6872 -0.1035 9 6 1.4009 4.7181 -1.1019 10 6 2.0259 6.0833 -0.8033 11 6 3.5459 5.9990 -0.9598 12 1 3.7903 5.6816 -1.9735 13 6 4.1545 7.3520 -0.6952 14 1 3.5207 8.1894 -0.4434 15 6 5.5206 7.5208 -0.7746 16 7 6.2925 6.5011 -1.0808 17 14 6.2751 9.1980 -0.4473 18 1 5.1997 10.1702 -0.1251 19 1 7.2150 9.1029 0.6985 20 1 7.0102 9.6543 -1.6541 21 6 4.1028 4.9830 0.0424 22 6 4.1400 0.0396 -0.8090 23 6 3.6424 -1.1680 -0.0067 24 6 2.1346 -1.1693 -0.0005 25 8 1.5270 -2.2185 0.0036 26 1 -0.3634 1.0276 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 -0.3633 -0.5139 0.8900 29 1 1.5745 2.6950 -0.3731 30 1 1.5960 3.9398 0.9007 31 1 1.6634 4.4138 -2.1151 32 1 0.3167 4.7840 -1.0106 33 1 1.7816 6.3768 0.2176 34 1 1.6297 6.8235 -1.4986 35 1 7.2537 6.6197 -1.1363 36 1 3.9389 5.3438 1.0578 37 1 5.1701 4.8459 -0.1311 38 1 3.9608 -0.1275 -1.8711 39 1 5.2083 0.1731 -0.6383 40 1 4.0107 -1.1060 1.0173 41 1 4.0053 -2.0856 -0.4699 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706323618.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:21 Heat of formation + Delta-G solvation = -33.061029 kcal Electronic energy + Delta-G solvation = -24363.086729 eV Core-core repulsion = 20857.645313 eV Total energy + Delta-G solvation = -3505.441416 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.00898 -40.89615 -38.56590 -38.19977 -35.37462 -35.13963 -33.66637 -32.52245 -31.39387 -28.98396 -27.13089 -26.78496 -25.59004 -24.25877 -23.41021 -21.92417 -20.51193 -19.13034 -18.80488 -18.36999 -17.89933 -17.34407 -16.92612 -16.50131 -16.43796 -16.16343 -15.43130 -15.39321 -14.96546 -14.64402 -14.48819 -14.35334 -14.21107 -13.84571 -13.65106 -13.44597 -13.25620 -13.24540 -12.89249 -12.65194 -12.50663 -12.28482 -12.25134 -12.05907 -11.66181 -11.45933 -11.29921 -11.01775 -10.94033 -10.51363 -10.23016 -9.88143 -9.42828 -8.08415 -6.24939 -0.29591 1.03224 1.29444 1.42225 1.44697 1.55789 1.96073 2.09726 2.44592 2.81477 3.19711 3.41463 3.44018 3.86301 3.94990 4.09488 4.21197 4.24106 4.39351 4.49570 4.50804 4.65261 4.69528 4.72397 4.78384 4.81501 4.87476 4.88170 5.06940 5.10982 5.18306 5.27842 5.34496 5.38315 5.57125 5.64835 5.91984 6.00587 6.34071 6.41055 6.55464 6.75193 6.87048 7.10748 7.45144 8.95199 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.029227 B = 0.004124 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.787530 B = 6788.715919 C = 7589.630343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.468 5.468 3 N -0.197 5.197 4 C 0.091 3.909 5 C 0.553 3.447 6 O -0.563 6.563 7 N -0.586 5.586 8 C 0.078 3.922 9 C -0.127 4.127 10 C -0.106 4.106 11 C 0.038 3.962 12 H -0.011 1.011 13 C -0.535 4.535 14 H 0.061 0.939 15 C 0.013 3.987 16 N -0.913 5.913 17 Si 0.955 3.045 18 H -0.263 1.263 19 H -0.282 1.282 20 H -0.284 1.284 21 C 0.123 3.877 22 C -0.103 4.103 23 C -0.133 4.133 24 C 0.492 3.508 25 O -0.550 6.550 26 H 0.110 0.890 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.144 0.856 30 H 0.077 0.923 31 H 0.048 0.952 32 H 0.102 0.898 33 H 0.057 0.943 34 H 0.050 0.950 35 H 0.261 0.739 36 H 0.044 0.956 37 H 0.084 0.916 38 H 0.114 0.886 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.053 -12.783 2.359 17.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.288 5.288 3 N -0.010 5.010 4 C -0.102 4.102 5 C 0.338 3.662 6 O -0.439 6.439 7 N -0.317 5.317 8 C -0.044 4.044 9 C -0.165 4.165 10 C -0.144 4.144 11 C 0.019 3.981 12 H 0.007 0.993 13 C -0.574 4.574 14 H 0.079 0.921 15 C -0.187 4.187 16 N -0.551 5.551 17 Si 0.781 3.219 18 H -0.187 1.187 19 H -0.208 1.208 20 H -0.210 1.210 21 C 0.001 3.999 22 C -0.142 4.142 23 C -0.173 4.173 24 C 0.281 3.719 25 O -0.425 6.425 26 H 0.128 0.872 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.160 0.840 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.120 0.880 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.102 0.898 38 H 0.132 0.868 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -11.400 -12.987 2.572 17.471 hybrid contribution 1.386 0.693 -0.167 1.558 sum -10.014 -12.295 2.405 16.039 Atomic orbital electron populations 1.21953 0.73588 1.05415 1.03368 1.49447 1.08433 1.01235 1.69650 1.74808 1.07995 1.05717 1.12461 1.24812 0.92139 0.96499 0.96714 1.17877 0.86495 0.83465 0.78336 1.90858 1.15348 1.86606 1.51132 1.48494 1.08780 1.07456 1.66953 1.23012 0.77435 1.03535 1.00415 1.21953 1.01207 0.94726 0.98585 1.21546 0.95441 0.96683 1.00751 1.18907 0.92571 0.93402 0.93263 0.99261 1.21525 0.92232 0.95757 1.47853 0.92106 1.25832 0.98049 1.00047 0.94722 1.70062 1.04712 1.31706 1.48667 0.85546 0.78468 0.80316 0.77569 1.18686 1.20784 1.20956 1.21863 0.99095 0.80948 0.97969 1.21011 1.03126 0.88182 1.01910 1.21949 0.89101 1.01352 1.04891 1.21742 0.92363 0.82977 0.74774 1.90715 1.71218 1.31238 1.49323 0.87187 0.90603 0.90448 0.84009 0.90524 0.93359 0.87956 0.92458 0.93071 0.93018 0.93814 0.89783 0.86848 0.86395 0.86277 0.84182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.51 10.35 127.77 1.32 2.83 16 2 N -0.47 -10.01 3.86 -484.51 -1.87 -11.88 16 3 N -0.20 -4.71 7.10 -43.50 -0.31 -5.02 16 4 C 0.09 2.46 6.62 45.05 0.30 2.76 16 5 C 0.55 20.84 7.62 86.46 0.66 21.50 16 6 O -0.56 -25.88 15.64 -4.22 -0.07 -25.95 16 7 N -0.59 -22.60 2.97 -823.59 -2.45 -25.05 16 8 C 0.08 2.27 5.87 86.36 0.51 2.77 16 9 C -0.13 -3.72 6.09 30.68 0.19 -3.53 16 10 C -0.11 -4.03 5.10 30.63 0.16 -3.87 16 11 C 0.04 1.86 2.26 -11.46 -0.03 1.83 16 12 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 13 C -0.54 -28.81 8.56 25.60 0.22 -28.59 16 14 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 15 C 0.01 0.72 5.30 84.66 0.45 1.17 16 16 N -0.91 -53.77 11.39 21.45 0.24 -53.53 16 17 Si 0.96 43.28 29.54 68.60 2.03 45.30 16 18 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 21 C 0.12 5.89 5.41 86.36 0.47 6.36 16 22 C -0.10 -2.12 5.92 29.90 0.18 -1.94 16 23 C -0.13 -2.29 6.21 29.97 0.19 -2.10 16 24 C 0.49 11.13 7.55 87.68 0.66 11.79 16 25 O -0.55 -15.32 17.10 -2.94 -0.05 -15.37 16 26 H 0.11 1.28 8.09 -2.39 -0.02 1.26 16 27 H 0.08 1.10 8.14 -2.38 -0.02 1.09 16 28 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 29 H 0.14 3.55 4.06 -110.77 -0.45 3.10 16 30 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.26 14.75 8.31 -92.70 -0.77 13.98 16 36 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.08 4.77 5.11 -2.39 -0.01 4.76 16 38 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.12 2.54 7.46 -2.38 -0.02 2.52 16 40 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.14 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -70.82 330.28 3.38 -67.44 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 0.60 Total: 13.07 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: 5.26 Total: 10.98 kcal Atomic # 7 Polarization: -91.09 SS G_CDS: -4.39 Total: -95.48 kcal Atomic # 8 Polarization: -41.20 SS G_CDS: -0.12 Total: -41.32 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -70.82 3.38 -67.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706323618.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.379 kcal (2) G-P(sol) polarization free energy of solvation -70.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds