Wall clock time and date at job start Tue Mar 31 2020 03:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.39864 * 119.79500 * 2 1 4 4 C 1.29696 * 121.13291 * 199.17245 * 3 2 1 5 5 C 1.46740 * 119.54319 * 180.10788 * 4 3 2 6 6 O 1.21653 * 119.99330 * 189.52833 * 5 4 3 7 7 N 1.34775 * 119.99975 * 9.52465 * 5 4 3 8 8 C 1.46931 * 120.63058 * 7.50812 * 7 5 4 9 9 C 1.53618 * 108.54273 * 126.36386 * 8 7 5 10 10 C 1.53037 * 109.24339 * 54.85493 * 9 8 7 11 11 C 1.53047 * 109.53793 * 298.51087 * 10 9 8 12 12 H 1.08997 * 109.49592 * 301.40740 * 11 10 9 13 13 C 1.50704 * 109.52349 * 181.33289 * 11 10 9 14 14 H 1.07996 * 120.00171 * 0.14186 * 13 11 10 15 15 C 1.37875 * 119.99793 * 180.14558 * 13 11 10 16 16 N 1.31519 * 120.00192 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 120.00193 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47032 * 89.99592 * 17 15 13 19 19 H 1.48493 * 109.47274 * 210.00064 * 17 15 13 20 20 H 1.48504 * 109.47044 * 330.00196 * 17 15 13 21 21 C 1.46918 * 120.62791 * 187.77985 * 7 5 4 22 22 C 1.50537 * 120.90656 * 0.08188 * 4 3 2 23 23 C 1.53011 * 109.60573 * 325.84886 * 22 4 3 24 24 C 1.34741 * 119.79717 * 179.72363 * 2 1 3 25 25 O 1.21260 * 120.12210 * 359.70511 * 24 2 1 26 26 H 1.09001 * 109.46860 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47433 * 240.00481 * 1 2 3 28 28 H 1.08998 * 109.46910 * 119.99872 * 1 2 3 29 29 H 1.09003 * 109.58047 * 246.19869 * 8 7 5 30 30 H 1.08999 * 109.58749 * 6.62244 * 8 7 5 31 31 H 1.09000 * 109.63810 * 294.86610 * 9 8 7 32 32 H 1.09001 * 109.46252 * 174.73540 * 9 8 7 33 33 H 1.08999 * 109.46733 * 178.49232 * 10 9 8 34 34 H 1.08994 * 109.46336 * 58.52870 * 10 9 8 35 35 H 0.97001 * 120.00179 * 180.02562 * 16 15 13 36 36 H 1.09007 * 109.58920 * 353.37877 * 21 7 5 37 37 H 1.09001 * 109.58811 * 113.65966 * 21 7 5 38 38 H 1.08995 * 109.45359 * 85.88891 * 22 4 3 39 39 H 1.08999 * 109.45228 * 205.83528 * 22 4 3 40 40 H 1.08997 * 109.51793 * 167.37137 * 23 22 4 41 41 H 1.09001 * 109.51398 * 287.47170 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1600 1.2138 0.0000 4 6 3.4032 1.2746 -0.3646 5 6 4.0994 2.5663 -0.3490 6 8 5.2036 2.6681 -0.8492 7 7 3.5154 3.6397 0.2195 8 6 2.2600 3.4993 0.9699 9 6 2.4540 4.1112 2.3655 10 6 2.9408 5.5548 2.2201 11 6 4.2892 5.5698 1.4963 12 1 5.0106 4.9772 2.0588 13 6 4.7838 6.9888 1.3823 14 1 4.1967 7.7995 1.7877 15 6 5.9859 7.2519 0.7604 16 7 6.7011 6.2645 0.2671 17 14 6.5988 9.0107 0.6184 18 1 7.4243 9.3447 1.8067 19 1 7.4205 9.1509 -0.6105 20 1 5.4386 9.9349 0.5461 21 6 4.1189 4.9735 0.0955 22 6 4.1418 0.0384 -0.8030 23 6 3.6421 -1.1681 -0.0056 24 6 2.1346 -1.1693 0.0056 25 8 1.5268 -2.2185 0.0161 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3634 -0.5138 0.8900 28 1 -0.3633 -0.5138 -0.8900 29 1 1.4606 4.0234 0.4459 30 1 2.0069 2.4433 1.0643 31 1 3.1927 3.5323 2.9198 32 1 1.5053 4.0996 2.9022 33 1 3.0540 6.0012 3.2080 34 1 2.2134 6.1271 1.6445 35 1 7.5470 6.4496 -0.1701 36 1 5.0928 4.8905 -0.3871 37 1 3.4693 5.6146 -0.5003 38 1 3.9671 -0.1313 -1.8654 39 1 5.2093 0.1719 -0.6276 40 1 4.0052 -2.0860 -0.4680 41 1 4.0108 -1.1059 1.0183 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706323651.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:24 Heat of formation + Delta-G solvation = -32.714475 kcal Electronic energy + Delta-G solvation = -24375.841928 eV Core-core repulsion = 20870.415540 eV Total energy + Delta-G solvation = -3505.426389 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.01432 -40.89557 -38.56240 -38.19769 -35.37925 -35.14437 -33.66448 -32.53043 -31.37762 -28.99007 -27.14143 -26.76087 -25.59117 -24.26992 -23.41397 -21.92662 -20.49900 -19.12061 -18.81101 -18.31622 -17.91655 -17.48916 -16.92742 -16.52012 -16.39802 -16.18104 -15.44581 -15.37427 -14.94086 -14.56184 -14.47765 -14.37625 -14.14867 -13.89125 -13.65420 -13.48244 -13.26810 -13.13699 -12.88987 -12.85900 -12.44620 -12.26359 -12.18821 -12.02459 -11.68185 -11.50792 -11.29364 -11.02220 -10.93664 -10.50425 -10.36297 -9.81325 -9.42012 -8.08153 -6.24751 -0.29625 1.03589 1.28719 1.43388 1.44867 1.54934 1.97479 2.07177 2.44810 2.81638 3.19857 3.40214 3.43976 3.86584 3.95202 4.08436 4.19602 4.24341 4.39555 4.49258 4.50998 4.65261 4.69331 4.71453 4.78035 4.81083 4.87865 4.89200 5.07160 5.10332 5.16325 5.27222 5.33254 5.37490 5.56709 5.64409 5.91975 6.00484 6.34088 6.40911 6.55444 6.75024 6.86982 7.10865 7.45256 8.95270 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.029235 B = 0.004114 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.525965 B = 6804.620148 C = 7482.141784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.468 5.468 3 N -0.197 5.197 4 C 0.091 3.909 5 C 0.553 3.447 6 O -0.563 6.563 7 N -0.586 5.586 8 C 0.080 3.920 9 C -0.127 4.127 10 C -0.106 4.106 11 C 0.038 3.962 12 H -0.011 1.011 13 C -0.536 4.536 14 H 0.061 0.939 15 C 0.013 3.987 16 N -0.913 5.913 17 Si 0.955 3.045 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.264 1.264 21 C 0.123 3.877 22 C -0.100 4.100 23 C -0.135 4.135 24 C 0.492 3.508 25 O -0.549 6.549 26 H 0.108 0.892 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.142 0.858 31 H 0.047 0.953 32 H 0.099 0.901 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.261 0.739 36 H 0.084 0.916 37 H 0.044 0.956 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.141 0.859 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.767 -12.338 -0.046 17.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.288 5.288 3 N -0.010 5.010 4 C -0.101 4.101 5 C 0.338 3.662 6 O -0.440 6.440 7 N -0.317 5.317 8 C -0.042 4.042 9 C -0.165 4.165 10 C -0.144 4.144 11 C 0.019 3.981 12 H 0.007 0.993 13 C -0.575 4.575 14 H 0.079 0.921 15 C -0.186 4.186 16 N -0.551 5.551 17 Si 0.781 3.219 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.188 1.188 21 C 0.002 3.998 22 C -0.140 4.140 23 C -0.174 4.174 24 C 0.282 3.718 25 O -0.425 6.425 26 H 0.126 0.874 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.158 0.842 31 H 0.066 0.934 32 H 0.118 0.882 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.102 0.898 37 H 0.062 0.938 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.159 0.841 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.188 -12.499 -0.097 17.458 hybrid contribution 1.330 0.717 -0.314 1.543 sum -10.858 -11.782 -0.411 16.028 Atomic orbital electron populations 1.21925 0.73633 1.05296 1.03344 1.49432 1.08405 1.01229 1.69704 1.74802 1.08718 1.06414 1.11075 1.24841 0.92615 0.96440 0.96208 1.17878 0.85008 0.83324 0.79951 1.90861 1.20057 1.84441 1.48620 1.48498 1.25271 1.07898 1.50023 1.23093 0.84285 1.05537 0.91327 1.22015 1.01943 0.95872 0.96680 1.21538 0.96906 0.96204 0.99722 1.18900 0.92962 0.94577 0.91647 0.99281 1.21496 1.05052 0.93404 1.37540 0.92099 1.25833 0.96947 1.00824 0.95020 1.70059 1.13880 1.32677 1.38499 0.85597 0.78452 0.80520 0.77346 1.20316 1.21258 1.18783 1.21858 0.98334 0.79357 1.00300 1.20927 1.02802 0.88128 1.02155 1.21911 0.89165 1.01401 1.04958 1.21720 0.92324 0.82984 0.74768 1.90718 1.71196 1.31237 1.49304 0.87369 0.90286 0.90767 0.90258 0.84203 0.93414 0.88225 0.93097 0.92371 0.93016 0.89798 0.93762 0.86832 0.86640 0.84098 0.86313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.54 10.35 127.77 1.32 2.86 16 2 N -0.47 -10.00 3.86 -484.51 -1.87 -11.87 16 3 N -0.20 -4.72 7.10 -43.50 -0.31 -5.03 16 4 C 0.09 2.47 6.63 45.05 0.30 2.77 16 5 C 0.55 20.84 7.61 86.47 0.66 21.50 16 6 O -0.56 -25.95 15.77 -4.20 -0.07 -26.02 16 7 N -0.59 -22.58 2.97 -822.75 -2.44 -25.02 16 8 C 0.08 2.32 5.90 86.51 0.51 2.83 16 9 C -0.13 -3.79 6.10 30.81 0.19 -3.60 16 10 C -0.11 -4.02 5.11 30.62 0.16 -3.86 16 11 C 0.04 1.89 2.25 -11.46 -0.03 1.86 16 12 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 13 C -0.54 -28.87 8.57 25.60 0.22 -28.65 16 14 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 15 C 0.01 0.74 5.30 84.65 0.45 1.19 16 16 N -0.91 -53.74 11.39 21.45 0.24 -53.49 16 17 Si 0.96 43.23 29.54 68.60 2.03 45.26 16 18 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 19 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 20 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 21 C 0.12 5.90 5.41 86.36 0.47 6.36 16 22 C -0.10 -2.07 5.81 29.80 0.17 -1.90 16 23 C -0.13 -2.31 6.20 29.87 0.19 -2.12 16 24 C 0.49 11.12 7.55 87.68 0.66 11.78 16 25 O -0.55 -15.29 17.10 -2.97 -0.05 -15.34 16 26 H 0.11 1.32 8.09 -2.39 -0.02 1.30 16 27 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.14 3.58 4.04 -112.53 -0.45 3.12 16 31 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 36 H 0.08 4.76 5.12 -2.38 -0.01 4.75 16 37 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.12 2.48 7.68 -2.39 -0.02 2.46 16 40 H 0.14 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -70.54 330.51 3.39 -67.15 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 0.59 Total: 13.33 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: 5.26 Total: 11.02 kcal Atomic # 7 Polarization: -91.04 SS G_CDS: -4.38 Total: -95.42 kcal Atomic # 8 Polarization: -41.24 SS G_CDS: -0.12 Total: -41.35 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -70.54 3.39 -67.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706323651.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.439 kcal (2) G-P(sol) polarization free energy of solvation -70.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds