Wall clock time and date at job start Tue Mar 31 2020 03:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37018 * 125.65455 * 2 1 4 4 C 1.35147 * 107.87713 * 180.28619 * 3 2 1 5 5 C 1.46655 * 126.37407 * 179.73517 * 4 3 2 6 6 O 1.21704 * 120.00408 * 265.03373 * 5 4 3 7 7 N 1.34778 * 120.00281 * 85.03790 * 5 4 3 8 8 C 1.46928 * 120.62848 * 5.08857 * 7 5 4 9 9 C 1.53194 * 108.77309 * 233.58586 * 8 7 5 10 10 C 1.53037 * 109.31204 * 305.36060 * 9 8 7 11 11 C 1.53037 * 109.53698 * 61.36568 * 10 9 8 12 12 H 1.09002 * 109.49622 * 58.62304 * 11 10 9 13 13 C 1.50707 * 109.49818 * 178.68068 * 11 10 9 14 14 H 1.08003 * 119.99932 * 0.02562 * 13 11 10 15 15 C 1.37878 * 119.99991 * 180.02562 * 13 11 10 16 16 N 1.31517 * 119.99863 * 0.02562 * 15 13 11 17 17 Si 1.86796 * 119.99921 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47226 * 359.97438 * 17 15 13 19 19 H 1.48491 * 109.47377 * 119.99811 * 17 15 13 20 20 H 1.48501 * 109.46862 * 240.00116 * 17 15 13 21 21 C 1.46921 * 120.63515 * 184.80232 * 7 5 4 22 22 N 1.39837 * 107.24717 * 359.58591 * 4 3 2 23 23 C 1.46498 * 126.18445 * 180.13614 * 22 4 3 24 24 C 1.34629 * 125.65209 * 180.02562 * 2 1 3 25 25 O 1.21722 * 125.72554 * 359.95916 * 24 2 1 26 26 H 1.08997 * 109.46957 * 90.00101 * 1 2 3 27 27 H 1.09002 * 109.47155 * 210.00040 * 1 2 3 28 28 H 1.09000 * 109.46946 * 329.99828 * 1 2 3 29 29 H 1.08000 * 126.05682 * 0.02562 * 3 2 1 30 30 H 1.09003 * 109.58665 * 353.36541 * 8 7 5 31 31 H 1.08996 * 109.59272 * 113.65093 * 8 7 5 32 32 H 1.08994 * 109.50000 * 65.31578 * 9 8 7 33 33 H 1.09004 * 109.49543 * 185.41373 * 9 8 7 34 34 H 1.08999 * 109.46149 * 181.38579 * 10 9 8 35 35 H 1.09000 * 109.46235 * 301.34688 * 10 9 8 36 36 H 0.96999 * 119.99692 * 180.02562 * 16 15 13 37 37 H 1.08998 * 109.59041 * 246.20337 * 21 7 5 38 38 H 1.08997 * 109.58525 * 6.63306 * 21 7 5 39 39 H 1.09003 * 109.47230 * 180.30475 * 23 22 4 40 40 H 1.09004 * 109.47175 * 300.30576 * 23 22 4 41 41 H 1.09000 * 109.46915 * 60.30568 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2637 1.1133 0.0000 4 6 3.5506 0.7007 -0.0064 5 6 4.7393 1.5596 -0.0142 6 8 5.2803 1.8405 -1.0676 7 7 5.2328 2.0379 1.1452 8 6 4.6599 1.6193 2.4318 9 6 4.2789 2.8691 3.2317 10 6 5.5003 3.7829 3.3551 11 6 5.9542 4.2215 1.9609 12 1 5.1375 4.7402 1.4589 13 6 7.1370 5.1471 2.0851 14 1 7.5267 5.3975 3.0607 15 6 7.7216 5.6743 0.9531 16 7 7.2468 5.3698 -0.2349 17 14 9.1881 6.8210 1.1070 18 1 9.5255 7.0035 2.5416 19 1 10.3519 6.2347 0.3951 20 1 8.8524 8.1372 0.5067 21 6 6.3578 2.9828 1.1469 22 7 3.5377 -0.6976 -0.0008 23 6 4.7120 -1.5734 -0.0019 24 6 2.2497 -1.0940 -0.0005 25 8 1.8610 -2.2474 -0.0003 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.9247 2.1388 0.0004 30 1 3.7713 1.0130 2.2562 31 1 5.3953 1.0375 2.9874 32 1 3.4778 3.4000 2.7175 33 1 3.9421 2.5759 4.2261 34 1 5.2385 4.6614 3.9448 35 1 6.3094 3.2432 3.8473 36 1 7.6583 5.7404 -1.0313 37 1 7.2298 2.5120 1.6008 38 1 6.5899 3.2763 0.1231 39 1 4.3890 -2.6144 -0.0019 40 1 5.3099 -1.3784 -0.8922 41 1 5.3111 -1.3789 0.8878 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710432097.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:08 Heat of formation + Delta-G solvation = -13.552700 kcal Electronic energy + Delta-G solvation = -24474.505220 eV Core-core repulsion = 20969.909748 eV Total energy + Delta-G solvation = -3504.595472 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.38746 -39.34591 -36.93517 -36.57475 -35.40707 -33.42880 -31.86959 -30.64600 -29.84814 -28.04133 -26.18926 -25.15452 -24.80638 -22.53675 -21.88933 -20.77627 -19.91620 -18.61721 -17.54029 -16.86452 -16.50982 -16.04575 -15.55632 -15.31340 -14.99576 -14.58237 -14.30202 -14.16515 -13.83198 -13.74944 -13.28154 -13.02464 -12.84960 -12.68280 -12.63167 -12.42348 -12.10650 -11.93357 -11.51868 -11.06641 -10.96140 -10.57831 -10.51157 -10.43150 -10.30567 -9.98695 -9.92975 -9.57961 -9.20413 -9.01693 -8.50173 -7.89455 -7.71369 -6.06237 -4.14592 1.91302 2.05763 2.84766 2.95252 3.21412 3.28076 3.35872 3.38387 3.81179 4.38609 4.63322 4.85995 5.00272 5.07887 5.11411 5.24099 5.27683 5.30427 5.37116 5.41201 5.49156 5.58902 5.62703 5.91364 5.93046 6.10941 6.24184 6.31407 6.51934 6.57599 6.67255 6.78092 6.88991 7.04748 7.12829 7.25360 7.54732 7.77945 7.90498 8.08574 8.23674 8.30672 8.62856 8.89772 9.51686 10.99448 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.026512 B = 0.004198 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.859041 B = 6668.223912 C = 6933.400667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.527 5.527 3 C 0.030 3.970 4 C -0.009 4.009 5 C 0.579 3.421 6 O -0.519 6.519 7 N -0.589 5.589 8 C 0.110 3.890 9 C -0.132 4.132 10 C -0.111 4.111 11 C 0.041 3.959 12 H 0.031 0.969 13 C -0.521 4.521 14 H 0.059 0.941 15 C 0.063 3.937 16 N -0.881 5.881 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.284 1.284 21 C 0.112 3.888 22 N -0.517 5.517 23 C 0.098 3.902 24 C 0.649 3.351 25 O -0.576 6.576 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.189 0.811 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.264 0.736 37 H 0.047 0.953 38 H 0.124 0.876 39 H 0.093 0.907 40 H 0.077 0.923 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.516 -9.145 3.812 14.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.245 5.245 3 C -0.096 4.096 4 C -0.118 4.118 5 C 0.363 3.637 6 O -0.394 6.394 7 N -0.321 5.321 8 C -0.014 4.014 9 C -0.170 4.170 10 C -0.149 4.149 11 C 0.021 3.979 12 H 0.049 0.951 13 C -0.559 4.559 14 H 0.078 0.922 15 C -0.140 4.140 16 N -0.519 5.519 17 Si 0.720 3.280 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.210 1.210 21 C -0.008 4.008 22 N -0.238 5.238 23 C -0.044 4.044 24 C 0.351 3.649 25 O -0.455 6.455 26 H 0.088 0.912 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.206 0.794 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.142 0.858 39 H 0.111 0.889 40 H 0.095 0.905 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.447 -9.827 3.056 14.664 hybrid contribution 0.762 0.729 0.053 1.056 sum -9.686 -9.098 3.108 13.647 Atomic orbital electron populations 1.21773 0.74928 1.04296 1.03208 1.44763 1.07633 1.05987 1.66108 1.21759 0.87287 0.93198 1.07398 1.20144 0.95320 0.83225 1.13100 1.16911 0.81954 0.80211 0.84649 1.90886 1.58876 1.58978 1.30652 1.48531 1.34597 1.44757 1.04243 1.21652 0.97964 0.96851 0.84938 1.21933 0.99806 0.96514 0.98765 1.21639 0.95265 0.97603 1.00402 1.19058 0.96915 0.92132 0.89749 0.95106 1.21116 1.14492 1.27516 0.92823 0.92245 1.25046 0.97204 0.96293 0.95418 1.69880 1.40669 1.43801 0.97518 0.86536 0.82642 0.80699 0.78144 1.19779 1.20950 1.20991 1.22506 0.84145 0.87515 1.06610 1.45282 1.06953 1.05053 1.66546 1.21794 0.85061 0.94180 1.03329 1.16075 0.80844 0.84835 0.83105 1.91002 1.76704 1.16435 1.61388 0.91236 0.89637 0.89609 0.79437 0.91178 0.91878 0.92004 0.92173 0.92877 0.93127 0.92625 0.93508 0.85849 0.88861 0.90464 0.90747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.82 11.01 59.85 0.66 1.48 16 2 N -0.53 -6.66 3.12 -128.78 -0.40 -7.06 16 3 C 0.03 0.39 11.24 -16.33 -0.18 0.20 16 4 C -0.01 -0.15 4.64 -81.91 -0.38 -0.53 16 5 C 0.58 11.08 7.24 -12.86 -0.09 10.98 16 6 O -0.52 -12.18 16.54 5.18 0.09 -12.09 16 7 N -0.59 -10.99 2.97 -174.05 -0.52 -11.51 16 8 C 0.11 1.62 6.35 -3.71 -0.02 1.60 16 9 C -0.13 -1.95 6.08 -26.61 -0.16 -2.12 16 10 C -0.11 -2.06 5.10 -26.69 -0.14 -2.19 16 11 C 0.04 0.94 2.26 -91.43 -0.21 0.73 16 12 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 13 C -0.52 -13.46 8.56 -34.44 -0.29 -13.75 16 14 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 15 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 16 N -0.88 -24.68 11.41 55.43 0.63 -24.04 16 17 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 C 0.11 2.53 5.41 -3.49 -0.02 2.52 16 22 N -0.52 -7.75 3.21 -124.82 -0.40 -8.15 16 23 C 0.10 1.22 10.98 59.85 0.66 1.88 16 24 C 0.65 10.10 8.49 -87.06 -0.74 9.36 16 25 O -0.58 -10.38 17.35 5.17 0.09 -10.29 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.08 0.71 8.04 -51.93 -0.42 0.30 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.19 1.96 8.06 -52.49 -0.42 1.54 16 30 H 0.07 0.94 6.21 -51.93 -0.32 0.61 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.12 3.30 5.18 -51.93 -0.27 3.03 16 39 H 0.09 1.06 7.73 -51.93 -0.40 0.66 16 40 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 338.97 15.07 5.11 5.11 Total: -1.00 -32.92 338.97 -7.47 -40.38 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -6.03 Total: 0.35 kcal Atomic # 6 Polarization: 12.77 SS G_CDS: -1.02 Total: 11.75 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: -0.69 Total: -50.76 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: 0.18 Total: -22.38 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.92 -7.47 -40.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710432097.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.832 kcal (2) G-P(sol) polarization free energy of solvation -32.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds