Wall clock time and date at job start Tue Mar 31 2020 03:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37011 * 125.64992 * 2 1 4 4 C 1.35148 * 107.87566 * 180.15012 * 3 2 1 5 5 C 1.46657 * 126.38199 * 179.88156 * 4 3 2 6 6 O 1.21707 * 119.99944 * 267.58092 * 5 4 3 7 7 N 1.34773 * 120.00077 * 87.57497 * 5 4 3 8 8 C 1.46931 * 120.63052 * 355.00631 * 7 5 4 9 9 C 1.53194 * 108.77253 * 126.39004 * 8 7 5 10 10 C 1.53041 * 109.31310 * 54.63449 * 9 8 7 11 11 C 1.53039 * 109.53962 * 298.63551 * 10 9 8 12 12 H 1.09006 * 109.49689 * 301.37987 * 11 10 9 13 13 C 1.50703 * 109.49764 * 181.31991 * 11 10 9 14 14 H 1.08003 * 119.99660 * 0.05757 * 13 11 10 15 15 C 1.37880 * 119.99790 * 179.78930 * 13 11 10 16 16 N 1.31510 * 119.99959 * 0.27545 * 15 13 11 17 17 Si 1.86799 * 119.99606 * 180.27090 * 15 13 11 18 18 H 1.48499 * 109.47179 * 60.00366 * 17 15 13 19 19 H 1.48498 * 109.46875 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47428 * 299.99894 * 17 15 13 21 21 C 1.46935 * 120.60601 * 174.98307 * 7 5 4 22 22 N 1.39843 * 107.24366 * 359.61954 * 4 3 2 23 23 C 1.46496 * 126.18137 * 180.23980 * 22 4 3 24 24 C 1.34614 * 125.64910 * 179.72346 * 2 1 3 25 25 O 1.21724 * 125.73265 * 359.97438 * 24 2 1 26 26 H 1.08998 * 109.46959 * 180.24979 * 1 2 3 27 27 H 1.08997 * 109.46889 * 300.25552 * 1 2 3 28 28 H 1.09002 * 109.46947 * 60.25370 * 1 2 3 29 29 H 1.08003 * 126.06798 * 0.02562 * 3 2 1 30 30 H 1.08998 * 109.58266 * 6.60783 * 8 7 5 31 31 H 1.08994 * 109.58896 * 246.17236 * 8 7 5 32 32 H 1.08999 * 109.49778 * 294.68504 * 9 8 7 33 33 H 1.08992 * 109.49572 * 174.58832 * 9 8 7 34 34 H 1.08999 * 109.45636 * 178.61453 * 10 9 8 35 35 H 1.08995 * 109.44998 * 58.65010 * 10 9 8 36 36 H 0.97001 * 119.99327 * 179.97438 * 16 15 13 37 37 H 1.09004 * 109.55851 * 113.80468 * 21 7 5 38 38 H 1.09000 * 109.61482 * 353.38278 * 21 7 5 39 39 H 1.09006 * 109.46996 * 90.00329 * 23 22 4 40 40 H 1.09004 * 109.46810 * 209.99537 * 23 22 4 41 41 H 1.08991 * 109.47273 * 329.99779 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2636 1.1133 0.0000 4 6 3.5505 0.7008 -0.0034 5 6 4.7393 1.5596 -0.0070 6 8 5.2558 1.8794 -1.0617 7 7 5.2599 1.9947 1.1575 8 6 4.5866 1.7087 2.4317 9 6 5.5886 1.0430 3.3802 10 6 6.8290 1.9301 3.5099 11 6 7.4919 2.0867 2.1394 12 1 7.7628 1.1045 1.7520 13 6 8.7311 2.9336 2.2739 14 1 9.0183 3.3208 3.2403 15 6 9.5014 3.2093 1.1640 16 7 9.1516 2.7378 -0.0128 17 14 11.0416 4.2528 1.3321 18 1 11.9862 3.5938 2.2695 19 1 11.6867 4.4006 0.0027 20 1 10.6768 5.5929 1.8576 21 6 6.5118 2.7637 1.1763 22 7 3.5376 -0.6976 0.0034 23 6 4.7120 -1.5733 0.0077 24 6 2.2496 -1.0939 0.0053 25 8 1.8610 -2.2474 0.0113 26 1 -0.3633 -1.0276 0.0045 27 1 -0.3633 0.5178 0.8877 28 1 -0.3633 0.5099 -0.8923 29 1 1.9248 2.1389 0.0004 30 1 3.7461 1.0369 2.2581 31 1 4.2286 2.6390 2.8727 32 1 5.8769 0.0707 2.9808 33 1 5.1304 0.9129 4.3605 34 1 7.5331 1.4705 4.2035 35 1 6.5364 2.9104 3.8859 36 1 9.6933 2.9322 -0.7936 37 1 6.3106 3.7803 1.5143 38 1 6.9415 2.7878 0.1748 39 1 5.0032 -1.7855 1.0364 40 1 4.4712 -2.5065 -0.5016 41 1 5.5352 -1.0796 -0.5085 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710432099.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:12 Heat of formation + Delta-G solvation = -13.509802 kcal Electronic energy + Delta-G solvation = -24566.475066 eV Core-core repulsion = 21061.881454 eV Total energy + Delta-G solvation = -3504.593612 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -42.37583 -39.35652 -36.93874 -36.56007 -35.38249 -33.44101 -31.88251 -30.61621 -29.86024 -28.03579 -26.14517 -25.14629 -24.82238 -22.53238 -21.90484 -20.72780 -19.90730 -18.67227 -17.45723 -16.85578 -16.52862 -16.05002 -15.55610 -15.30485 -14.96002 -14.59813 -14.30310 -14.14227 -13.82863 -13.66974 -13.44526 -12.97342 -12.82474 -12.68118 -12.56939 -12.33456 -12.06990 -11.96065 -11.52453 -11.05260 -10.94851 -10.58656 -10.50368 -10.45012 -10.30317 -9.98893 -9.90304 -9.58669 -9.20348 -9.03222 -8.49907 -7.89888 -7.70656 -6.06390 -4.14961 1.90709 2.07066 2.86964 2.89672 3.28137 3.30744 3.35277 3.36235 3.79986 4.38369 4.65029 4.86917 5.04942 5.07547 5.08187 5.23971 5.28422 5.36036 5.38740 5.42451 5.50116 5.62285 5.71994 5.92285 5.96044 6.11093 6.23867 6.33447 6.52345 6.57525 6.68593 6.78176 6.88771 7.03894 7.12668 7.27473 7.54393 7.77739 7.90135 8.08190 8.26105 8.30218 8.61766 8.88898 9.51230 10.99221 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.027323 B = 0.004258 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.526607 B = 6574.837267 C = 6784.564883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.527 5.527 3 C 0.021 3.979 4 C -0.004 4.004 5 C 0.578 3.422 6 O -0.518 6.518 7 N -0.589 5.589 8 C 0.109 3.891 9 C -0.133 4.133 10 C -0.111 4.111 11 C 0.041 3.959 12 H 0.029 0.971 13 C -0.522 4.522 14 H 0.059 0.941 15 C 0.064 3.936 16 N -0.882 5.882 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.112 3.888 22 N -0.514 5.514 23 C 0.099 3.901 24 C 0.648 3.352 25 O -0.575 6.575 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.187 0.813 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.265 0.735 37 H 0.047 0.953 38 H 0.124 0.876 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.936 -2.846 3.118 15.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.246 5.246 3 C -0.105 4.105 4 C -0.113 4.113 5 C 0.362 3.638 6 O -0.393 6.393 7 N -0.321 5.321 8 C -0.014 4.014 9 C -0.171 4.171 10 C -0.149 4.149 11 C 0.022 3.978 12 H 0.047 0.953 13 C -0.561 4.561 14 H 0.077 0.923 15 C -0.139 4.139 16 N -0.519 5.519 17 Si 0.721 3.279 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.008 4.008 22 N -0.234 5.234 23 C -0.042 4.042 24 C 0.351 3.649 25 O -0.454 6.454 26 H 0.110 0.890 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.204 0.796 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.142 0.858 39 H 0.090 0.910 40 H 0.105 0.895 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.850 -3.546 2.353 15.448 hybrid contribution 0.810 0.644 0.121 1.042 sum -14.040 -2.901 2.475 14.549 Atomic orbital electron populations 1.21779 0.75051 1.04821 1.02785 1.44732 1.07575 1.05992 1.66253 1.21663 0.87252 0.93176 1.08406 1.20181 0.95219 0.83477 1.12450 1.16929 0.81811 0.80407 0.84690 1.90890 1.59969 1.57833 1.30652 1.48535 1.25579 1.53500 1.04529 1.21665 0.95052 0.99892 0.84802 1.21938 0.97387 0.99772 0.98001 1.21636 0.94937 0.97883 1.00403 1.18969 0.92539 0.97011 0.89289 0.95287 1.21032 1.07762 1.32867 0.94396 0.92324 1.25041 0.97734 0.95746 0.95389 1.69853 1.38760 1.44331 0.98959 0.86637 0.83201 0.80823 0.77234 1.20281 1.21236 1.20202 1.22431 0.79629 0.92188 1.06508 1.45310 1.07001 1.05010 1.66123 1.21818 0.85077 0.93915 1.03404 1.16085 0.80848 0.84849 0.83129 1.91005 1.76684 1.16408 1.61328 0.89016 0.90662 0.90718 0.79610 0.91192 0.91603 0.92278 0.92143 0.92905 0.93042 0.92501 0.93459 0.85831 0.91008 0.89547 0.89325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.77 11.16 59.85 0.67 1.44 16 2 N -0.53 -6.55 3.12 -128.78 -0.40 -6.95 16 3 C 0.02 0.26 11.21 -16.34 -0.18 0.08 16 4 C 0.00 -0.07 4.65 -81.91 -0.38 -0.45 16 5 C 0.58 11.01 7.06 -12.86 -0.09 10.92 16 6 O -0.52 -12.10 16.54 5.18 0.09 -12.01 16 7 N -0.59 -10.98 2.97 -174.31 -0.52 -11.49 16 8 C 0.11 1.62 6.35 -3.71 -0.02 1.59 16 9 C -0.13 -2.03 6.08 -26.61 -0.16 -2.19 16 10 C -0.11 -2.07 5.11 -26.69 -0.14 -2.21 16 11 C 0.04 0.95 2.25 -91.66 -0.21 0.75 16 12 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 13 C -0.52 -13.52 8.56 -34.44 -0.29 -13.81 16 14 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 15 C 0.06 1.70 5.31 -17.82 -0.09 1.61 16 16 N -0.88 -24.70 11.40 55.43 0.63 -24.06 16 17 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 C 0.11 2.54 5.39 -3.71 -0.02 2.52 16 22 N -0.51 -8.04 3.21 -124.83 -0.40 -8.45 16 23 C 0.10 1.40 10.92 59.84 0.65 2.05 16 24 C 0.65 10.28 8.49 -87.08 -0.74 9.54 16 25 O -0.58 -10.60 17.35 5.17 0.09 -10.51 16 26 H 0.09 0.79 7.68 -51.93 -0.40 0.39 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.19 1.67 8.06 -52.48 -0.42 1.25 16 30 H 0.07 0.94 6.19 -51.93 -0.32 0.62 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.12 3.30 5.16 -51.93 -0.27 3.03 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.09 1.12 8.08 -51.93 -0.42 0.70 16 41 H 0.09 1.34 7.90 -51.93 -0.41 0.93 16 LS Contribution 338.53 15.07 5.10 5.10 Total: -1.00 -32.81 338.53 -7.45 -40.26 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -6.01 Total: 0.70 kcal Atomic # 6 Polarization: 12.86 SS G_CDS: -1.01 Total: 11.85 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: -0.69 Total: -50.96 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: 0.18 Total: -22.52 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.81 -7.45 -40.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710432099.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.750 kcal (2) G-P(sol) polarization free energy of solvation -32.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds