Wall clock time and date at job start Tue Mar 31 2020 03:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37011 * 125.64992 * 2 1 4 4 C 1.35148 * 107.87566 * 180.15012 * 3 2 1 5 5 C 1.46657 * 126.38199 * 179.88156 * 4 3 2 6 6 O 1.21707 * 119.99944 * 267.58092 * 5 4 3 7 7 N 1.34773 * 120.00077 * 87.57497 * 5 4 3 8 8 C 1.46931 * 120.63052 * 355.00631 * 7 5 4 9 9 C 1.53194 * 108.77253 * 126.39004 * 8 7 5 10 10 C 1.53041 * 109.31310 * 54.63449 * 9 8 7 11 11 C 1.53039 * 109.53962 * 298.63551 * 10 9 8 12 12 H 1.09006 * 109.49689 * 301.37987 * 11 10 9 13 13 C 1.50703 * 109.49764 * 181.31991 * 11 10 9 14 14 H 1.08003 * 119.99660 * 0.05757 * 13 11 10 15 15 C 1.37880 * 119.99790 * 179.78930 * 13 11 10 16 16 N 1.31510 * 119.99959 * 0.27545 * 15 13 11 17 17 Si 1.86799 * 119.99606 * 180.27090 * 15 13 11 18 18 H 1.48499 * 109.47179 * 60.00366 * 17 15 13 19 19 H 1.48498 * 109.46875 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47428 * 299.99894 * 17 15 13 21 21 C 1.46935 * 120.60601 * 174.98307 * 7 5 4 22 22 N 1.39843 * 107.24366 * 359.61954 * 4 3 2 23 23 C 1.46496 * 126.18137 * 180.23980 * 22 4 3 24 24 C 1.34614 * 125.64910 * 179.72346 * 2 1 3 25 25 O 1.21724 * 125.73265 * 359.97438 * 24 2 1 26 26 H 1.08998 * 109.46959 * 180.24979 * 1 2 3 27 27 H 1.08997 * 109.46889 * 300.25552 * 1 2 3 28 28 H 1.09002 * 109.46947 * 60.25370 * 1 2 3 29 29 H 1.08003 * 126.06798 * 0.02562 * 3 2 1 30 30 H 1.08998 * 109.58266 * 6.60783 * 8 7 5 31 31 H 1.08994 * 109.58896 * 246.17236 * 8 7 5 32 32 H 1.08999 * 109.49778 * 294.68504 * 9 8 7 33 33 H 1.08992 * 109.49572 * 174.58832 * 9 8 7 34 34 H 1.08999 * 109.45636 * 178.61453 * 10 9 8 35 35 H 1.08995 * 109.44998 * 58.65010 * 10 9 8 36 36 H 0.97001 * 119.99327 * 179.97438 * 16 15 13 37 37 H 1.09004 * 109.55851 * 113.80468 * 21 7 5 38 38 H 1.09000 * 109.61482 * 353.38278 * 21 7 5 39 39 H 1.09006 * 109.46996 * 90.00329 * 23 22 4 40 40 H 1.09004 * 109.46810 * 209.99537 * 23 22 4 41 41 H 1.08991 * 109.47273 * 329.99779 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2636 1.1133 0.0000 4 6 3.5505 0.7008 -0.0034 5 6 4.7393 1.5596 -0.0070 6 8 5.2558 1.8794 -1.0617 7 7 5.2599 1.9947 1.1575 8 6 4.5866 1.7087 2.4317 9 6 5.5886 1.0430 3.3802 10 6 6.8290 1.9301 3.5099 11 6 7.4919 2.0867 2.1394 12 1 7.7628 1.1045 1.7520 13 6 8.7311 2.9336 2.2739 14 1 9.0183 3.3208 3.2403 15 6 9.5014 3.2093 1.1640 16 7 9.1516 2.7378 -0.0128 17 14 11.0416 4.2528 1.3321 18 1 11.9862 3.5938 2.2695 19 1 11.6867 4.4006 0.0027 20 1 10.6768 5.5929 1.8576 21 6 6.5118 2.7637 1.1763 22 7 3.5376 -0.6976 0.0034 23 6 4.7120 -1.5733 0.0077 24 6 2.2496 -1.0939 0.0053 25 8 1.8610 -2.2474 0.0113 26 1 -0.3633 -1.0276 0.0045 27 1 -0.3633 0.5178 0.8877 28 1 -0.3633 0.5099 -0.8923 29 1 1.9248 2.1389 0.0004 30 1 3.7461 1.0369 2.2581 31 1 4.2286 2.6390 2.8727 32 1 5.8769 0.0707 2.9808 33 1 5.1304 0.9129 4.3605 34 1 7.5331 1.4705 4.2035 35 1 6.5364 2.9104 3.8859 36 1 9.6933 2.9322 -0.7936 37 1 6.3106 3.7803 1.5143 38 1 6.9415 2.7878 0.1748 39 1 5.0032 -1.7855 1.0364 40 1 4.4712 -2.5065 -0.5016 41 1 5.5352 -1.0796 -0.5085 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710432099.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:10 Heat of formation + Delta-G solvation = -34.498914 kcal Electronic energy + Delta-G solvation = -24567.385222 eV Core-core repulsion = 21061.881454 eV Total energy + Delta-G solvation = -3505.503768 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.50768 -40.85703 -38.42781 -37.89887 -36.44815 -35.27270 -33.49658 -31.82851 -31.35259 -29.19675 -27.25095 -26.92575 -26.17878 -23.82033 -23.43927 -21.87006 -21.37582 -20.08803 -18.86077 -18.20952 -18.01186 -17.46203 -17.01318 -16.57362 -16.44752 -16.09259 -15.62205 -15.21421 -15.08521 -15.03558 -14.80125 -14.46039 -14.28367 -13.99209 -13.72169 -13.51255 -13.46725 -13.26245 -12.83770 -12.80286 -12.53358 -12.27069 -12.23987 -11.83803 -11.74360 -11.63652 -11.23847 -10.95705 -10.90917 -10.80721 -10.49805 -9.48444 -8.84242 -8.09634 -6.25621 0.80858 0.91690 1.44413 1.44684 1.53079 1.61171 1.70127 1.99434 2.43586 2.55654 3.19719 3.50583 3.81958 4.05105 4.08336 4.16453 4.22694 4.29517 4.33896 4.42631 4.57389 4.58362 4.61607 4.74133 4.80186 4.83141 4.86188 4.92051 5.10613 5.23252 5.25397 5.27774 5.37549 5.52860 5.61602 5.66505 5.91570 6.00175 6.17218 6.34169 6.53428 6.86235 7.09887 7.13850 7.44751 8.93787 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.027323 B = 0.004258 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.526607 B = 6574.837267 C = 6784.564883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.517 5.517 3 C 0.070 3.930 4 C -0.047 4.047 5 C 0.584 3.416 6 O -0.574 6.574 7 N -0.589 5.589 8 C 0.109 3.891 9 C -0.126 4.126 10 C -0.104 4.104 11 C 0.039 3.961 12 H -0.012 1.012 13 C -0.535 4.535 14 H 0.062 0.938 15 C 0.014 3.986 16 N -0.915 5.915 17 Si 0.954 3.046 18 H -0.271 1.271 19 H -0.291 1.291 20 H -0.266 1.266 21 C 0.126 3.874 22 N -0.518 5.518 23 C 0.100 3.900 24 C 0.636 3.364 25 O -0.608 6.608 26 H 0.082 0.918 27 H 0.108 0.892 28 H 0.099 0.901 29 H 0.229 0.771 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.046 0.954 33 H 0.100 0.900 34 H 0.051 0.949 35 H 0.061 0.939 36 H 0.260 0.740 37 H 0.047 0.953 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.482 -1.893 5.062 18.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.233 5.233 3 C -0.057 4.057 4 C -0.155 4.155 5 C 0.369 3.631 6 O -0.453 6.453 7 N -0.319 5.319 8 C -0.013 4.013 9 C -0.164 4.164 10 C -0.142 4.142 11 C 0.020 3.980 12 H 0.006 0.994 13 C -0.574 4.574 14 H 0.081 0.919 15 C -0.186 4.186 16 N -0.553 5.553 17 Si 0.780 3.220 18 H -0.196 1.196 19 H -0.217 1.217 20 H -0.191 1.191 21 C 0.004 3.996 22 N -0.238 5.238 23 C -0.042 4.042 24 C 0.339 3.661 25 O -0.490 6.490 26 H 0.101 0.899 27 H 0.126 0.874 28 H 0.118 0.882 29 H 0.246 0.754 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.065 0.935 33 H 0.119 0.881 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.113 0.887 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.443 -2.585 4.350 18.162 hybrid contribution 1.537 0.343 -0.471 1.644 sum -15.906 -2.242 3.880 16.525 Atomic orbital electron populations 1.22197 0.72051 1.05255 1.05662 1.45039 1.09153 1.04860 1.64238 1.22280 0.85755 0.94529 1.03184 1.19657 0.95014 0.83129 1.17707 1.17268 0.82177 0.79884 0.83730 1.90854 1.61989 1.59825 1.32650 1.48490 1.24416 1.52734 1.06289 1.21947 0.95073 1.01649 0.82622 1.21901 0.96057 0.98254 1.00213 1.21514 0.96232 0.99335 0.97104 1.18903 0.92622 0.94342 0.92138 0.99371 1.21476 1.08846 1.32658 0.94375 0.91945 1.25825 1.00687 0.96986 0.95097 1.70048 1.39810 1.45904 0.99556 0.85666 0.79762 0.79629 0.76950 1.19595 1.21652 1.19117 1.21842 0.81369 0.92652 1.03702 1.45357 1.07298 1.05142 1.66053 1.21800 0.84524 0.93938 1.03921 1.16249 0.80998 0.85230 0.83645 1.90974 1.77154 1.17839 1.62994 0.89875 0.87396 0.88218 0.75432 0.88982 0.88981 0.93479 0.88124 0.93061 0.91989 0.93110 0.93485 0.90283 0.89920 0.88720 0.91388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.02 11.16 127.77 1.43 2.45 16 2 N -0.52 -11.03 3.12 -679.66 -2.12 -13.16 16 3 C 0.07 1.47 11.21 83.17 0.93 2.40 16 4 C -0.05 -1.41 4.65 39.35 0.18 -1.23 16 5 C 0.58 22.44 7.06 86.44 0.61 23.05 16 6 O -0.57 -28.11 16.54 -4.37 -0.07 -28.18 16 7 N -0.59 -21.77 2.97 -823.61 -2.45 -24.22 16 8 C 0.11 2.89 6.35 86.36 0.55 3.44 16 9 C -0.13 -3.54 6.08 30.67 0.19 -3.35 16 10 C -0.10 -3.76 5.11 30.62 0.16 -3.61 16 11 C 0.04 1.87 2.25 -11.46 -0.03 1.84 16 12 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 13 C -0.54 -28.24 8.56 25.60 0.22 -28.02 16 14 H 0.06 3.17 7.74 -2.91 -0.02 3.14 16 15 C 0.01 0.75 5.31 84.66 0.45 1.19 16 16 N -0.91 -53.75 11.40 21.45 0.24 -53.50 16 17 Si 0.95 42.94 29.54 68.60 2.03 44.97 16 18 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 19 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 20 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 21 C 0.13 5.87 5.39 86.36 0.47 6.34 16 22 N -0.52 -15.86 3.21 -667.06 -2.14 -18.00 16 23 C 0.10 2.90 10.92 127.77 1.39 4.29 16 24 C 0.64 19.14 8.49 179.11 1.52 20.67 16 25 O -0.61 -21.86 17.35 -4.43 -0.08 -21.94 16 26 H 0.08 1.18 7.68 -2.39 -0.02 1.16 16 27 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.23 2.77 8.06 -2.91 -0.02 2.75 16 30 H 0.09 2.11 6.19 -2.39 -0.01 2.10 16 31 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 37 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.08 4.47 5.16 -2.39 -0.01 4.46 16 39 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 40 H 0.09 2.53 8.08 -2.38 -0.02 2.51 16 41 H 0.07 2.23 7.90 -2.39 -0.02 2.21 16 Total: -1.00 -76.65 338.53 4.50 -72.15 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 1.03 Total: 12.42 kcal Atomic # 6 Polarization: 21.40 SS G_CDS: 8.07 Total: 29.47 kcal Atomic # 7 Polarization: -102.42 SS G_CDS: -6.47 Total: -108.89 kcal Atomic # 8 Polarization: -49.97 SS G_CDS: -0.15 Total: -50.12 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -76.65 4.50 -72.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710432099.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.649 kcal (2) G-P(sol) polarization free energy of solvation -76.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds