Wall clock time and date at job start Tue Mar 31 2020 03:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37016 * 125.64623 * 2 1 4 4 C 1.35143 * 107.87693 * 180.10207 * 3 2 1 5 5 C 1.46658 * 126.38167 * 179.90147 * 4 3 2 6 6 O 1.21694 * 120.00267 * 94.96562 * 5 4 3 7 7 N 1.34784 * 119.99640 * 274.96779 * 5 4 3 8 8 C 1.46920 * 120.63042 * 354.62556 * 7 5 4 9 9 C 1.53631 * 108.54042 * 126.37005 * 8 7 5 10 10 C 1.53045 * 109.23947 * 54.85714 * 9 8 7 11 11 C 1.50700 * 109.44637 * 178.49530 * 10 9 8 12 12 H 1.07999 * 119.99685 * 120.06047 * 11 10 9 13 13 C 1.37875 * 120.00499 * 300.06114 * 11 10 9 14 14 N 1.31511 * 120.00398 * 179.97438 * 13 11 10 15 15 Si 1.86804 * 119.99602 * 0.02562 * 13 11 10 16 16 H 1.48495 * 109.47108 * 90.00102 * 15 13 11 17 17 H 1.48498 * 109.46772 * 209.99925 * 15 13 11 18 18 H 1.48504 * 109.46946 * 330.00005 * 15 13 11 19 19 C 1.53043 * 109.53601 * 298.50744 * 10 9 8 20 20 C 1.46922 * 120.62630 * 174.90843 * 7 5 4 21 21 N 1.39839 * 107.24125 * 359.63925 * 4 3 2 22 22 C 1.46507 * 126.17944 * 180.22271 * 21 4 3 23 23 C 1.34611 * 125.65776 * 179.68901 * 2 1 3 24 24 O 1.21734 * 125.72793 * 0.06375 * 23 2 1 25 25 H 1.09008 * 109.46851 * 180.28190 * 1 2 3 26 26 H 1.09000 * 109.47361 * 300.28148 * 1 2 3 27 27 H 1.08995 * 109.47252 * 60.28615 * 1 2 3 28 28 H 1.07995 * 126.06309 * 0.02562 * 3 2 1 29 29 H 1.08998 * 109.58852 * 246.20234 * 8 7 5 30 30 H 1.08997 * 109.58971 * 6.63278 * 8 7 5 31 31 H 1.09000 * 109.63414 * 294.86694 * 9 8 7 32 32 H 1.08997 * 109.43123 * 174.72283 * 9 8 7 33 33 H 1.08995 * 109.46140 * 58.52907 * 10 9 8 34 34 H 0.97000 * 119.99987 * 179.97438 * 14 13 11 35 35 H 1.08992 * 109.50029 * 301.41846 * 19 10 9 36 36 H 1.09001 * 109.51703 * 181.33125 * 19 10 9 37 37 H 1.09004 * 109.58915 * 353.37438 * 20 7 5 38 38 H 1.09001 * 109.58709 * 113.65741 * 20 7 5 39 39 H 1.09004 * 109.47052 * 90.00500 * 22 21 4 40 40 H 1.09003 * 109.47030 * 209.99901 * 22 21 4 41 41 H 1.08996 * 109.47444 * 329.99830 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2635 1.1134 0.0000 4 6 3.5505 0.7010 -0.0023 5 6 4.7392 1.5599 -0.0052 6 8 5.2880 1.8430 1.0435 7 7 5.2239 2.0358 -1.1693 8 6 4.6455 1.6098 -2.4509 9 6 4.2544 2.8620 -3.2506 10 6 5.4745 3.7761 -3.3849 11 6 5.1057 4.9886 -4.2002 12 1 5.1934 5.9754 -3.7703 13 6 4.6564 4.8382 -5.4950 14 7 4.3340 5.8963 -6.2063 15 14 4.5040 3.1312 -6.2383 16 1 3.1467 2.5931 -5.9683 17 1 4.7230 3.2088 -7.7050 18 1 5.5215 2.2350 -5.6326 19 6 5.9384 4.2180 -1.9950 20 6 6.3448 2.9856 -1.1810 21 7 3.5376 -0.6973 0.0047 22 6 4.7122 -1.5730 0.0097 23 6 2.2497 -1.0937 0.0059 24 8 1.8612 -2.2474 0.0111 25 1 -0.3633 -1.0277 0.0051 26 1 -0.3634 0.5182 0.8874 27 1 -0.3633 0.5094 -0.8925 28 1 1.9246 2.1388 0.0004 29 1 5.3811 1.0312 -3.0096 30 1 3.7606 1.0004 -2.2679 31 1 3.4569 3.3937 -2.7316 32 1 3.9104 2.5665 -4.2417 33 1 6.2802 3.2357 -3.8818 34 1 4.0183 5.7905 -7.1173 35 1 5.1250 4.7369 -1.4879 36 1 6.7928 4.8879 -2.0921 37 1 6.5816 3.2840 -0.1597 38 1 7.2170 2.5160 -1.6359 39 1 5.0029 -1.7851 1.0386 40 1 4.4717 -2.5063 -0.4996 41 1 5.5357 -1.0793 -0.5062 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710435362.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:04 Heat of formation + Delta-G solvation = -27.110394 kcal Electronic energy + Delta-G solvation = -24499.990273 eV Core-core repulsion = 20994.806895 eV Total energy + Delta-G solvation = -3505.183377 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.54098 -41.05246 -38.62904 -37.95464 -36.47176 -35.32641 -33.45984 -32.26004 -31.45647 -29.30193 -28.08400 -27.06073 -25.14431 -24.20965 -23.53186 -21.98544 -21.42741 -20.14493 -18.97417 -18.70779 -18.08501 -17.58946 -17.16359 -16.67508 -16.51738 -16.19497 -15.76009 -15.29461 -15.07814 -14.99811 -14.88530 -14.67825 -14.24251 -14.06102 -14.01279 -13.69730 -13.50806 -13.42662 -13.31645 -12.81410 -12.56500 -12.26832 -12.08028 -11.90885 -11.73120 -11.47746 -11.27619 -11.04683 -10.99070 -10.91012 -10.62823 -9.69626 -8.87808 -8.25010 -6.29075 0.73303 0.87638 1.33465 1.40664 1.50001 1.54885 1.67533 1.78044 2.36283 2.45394 3.10722 3.39404 3.78008 3.96741 4.05878 4.14652 4.19287 4.20053 4.30393 4.34150 4.39376 4.45440 4.52491 4.57491 4.62037 4.74480 4.78509 4.83687 4.90635 4.98522 5.05321 5.13313 5.24853 5.39534 5.57112 5.62885 5.71370 5.77895 6.13266 6.24947 6.35986 6.79159 6.90946 7.08083 7.36636 8.91928 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.017886 B = 0.005056 C = 0.004506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.113019 B = 5537.130519 C = 6212.937612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.520 5.520 3 C 0.064 3.936 4 C -0.050 4.050 5 C 0.602 3.398 6 O -0.560 6.560 7 N -0.585 5.585 8 C 0.113 3.887 9 C -0.130 4.130 10 C 0.012 3.988 11 C -0.515 4.515 12 H 0.031 0.969 13 C 0.010 3.990 14 N -0.954 5.954 15 Si 0.945 3.055 16 H -0.263 1.263 17 H -0.307 1.307 18 H -0.237 1.237 19 C -0.106 4.106 20 C 0.117 3.883 21 N -0.517 5.517 22 C 0.096 3.904 23 C 0.635 3.365 24 O -0.607 6.607 25 H 0.085 0.915 26 H 0.101 0.899 27 H 0.099 0.901 28 H 0.219 0.781 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.048 0.952 33 H 0.031 0.969 34 H 0.263 0.737 35 H 0.050 0.950 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.557 -13.088 11.414 17.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.236 5.236 3 C -0.064 4.064 4 C -0.157 4.157 5 C 0.387 3.613 6 O -0.438 6.438 7 N -0.316 5.316 8 C -0.009 4.009 9 C -0.168 4.168 10 C -0.007 4.007 11 C -0.553 4.553 12 H 0.049 0.951 13 C -0.187 4.187 14 N -0.594 5.594 15 Si 0.772 3.228 16 H -0.189 1.189 17 H -0.236 1.236 18 H -0.160 1.160 19 C -0.144 4.144 20 C -0.005 4.005 21 N -0.238 5.238 22 C -0.045 4.045 23 C 0.338 3.662 24 O -0.489 6.489 25 H 0.104 0.896 26 H 0.120 0.880 27 H 0.118 0.882 28 H 0.235 0.765 29 H 0.100 0.900 30 H 0.109 0.891 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.112 0.888 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.595 -13.745 11.812 18.477 hybrid contribution -0.198 0.006 -0.884 0.906 sum -3.793 -13.739 10.929 17.961 Atomic orbital electron populations 1.22169 0.72458 1.05268 1.05433 1.45059 1.09144 1.05185 1.64183 1.22260 0.86563 0.94389 1.03202 1.19640 0.94992 0.83324 1.17788 1.16908 0.81705 0.79409 0.83233 1.90823 1.59894 1.60906 1.32187 1.48155 1.33876 1.43861 1.05688 1.21952 0.99297 0.96552 0.83107 1.22294 1.00175 0.95886 0.98445 1.19121 0.93994 0.93796 0.93744 1.21377 1.42961 0.93327 0.97659 0.95068 1.25912 0.94624 1.00531 0.97605 1.70063 1.46947 1.31837 1.10587 0.85909 0.80067 0.80803 0.76047 1.18905 1.23560 1.15986 1.21710 1.00964 0.96463 0.95289 1.21790 0.87853 0.89011 1.01822 1.45388 1.07306 1.05010 1.66091 1.21928 0.84476 0.94074 1.03983 1.16282 0.81307 0.85046 0.83603 1.90985 1.77224 1.17816 1.62889 0.89635 0.88047 0.88239 0.76476 0.89998 0.89056 0.91719 0.93394 0.95055 0.92767 0.93113 0.91213 0.89078 0.89641 0.90509 0.88824 0.89080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.13 11.16 127.77 1.43 2.56 16 2 N -0.52 -10.94 3.12 -679.66 -2.12 -13.07 16 3 C 0.06 1.28 11.25 83.17 0.94 2.22 16 4 C -0.05 -1.22 4.63 39.35 0.18 -1.03 16 5 C 0.60 16.67 7.06 86.44 0.61 17.28 16 6 O -0.56 -18.74 16.54 -4.33 -0.07 -18.82 16 7 N -0.58 -15.80 2.97 -822.79 -2.44 -18.24 16 8 C 0.11 3.02 6.38 86.51 0.55 3.57 16 9 C -0.13 -4.50 4.86 30.82 0.15 -4.35 16 10 C 0.01 0.49 1.65 -11.51 -0.02 0.48 16 11 C -0.52 -27.11 9.14 25.60 0.23 -26.88 16 12 H 0.03 1.85 7.99 -2.91 -0.02 1.83 16 13 C 0.01 0.54 5.45 84.65 0.46 1.00 16 14 N -0.95 -57.49 13.96 21.45 0.30 -57.19 16 15 Si 0.94 41.21 24.38 68.60 1.67 42.89 16 16 H -0.26 -10.75 6.86 99.48 0.68 -10.07 16 17 H -0.31 -13.87 7.11 99.48 0.71 -13.17 16 18 H -0.24 -9.13 6.53 99.48 0.65 -8.48 16 19 C -0.11 -3.59 5.30 30.67 0.16 -3.43 16 20 C 0.12 3.21 6.42 86.36 0.55 3.77 16 21 N -0.52 -12.91 3.21 -667.04 -2.14 -15.05 16 22 C 0.10 1.90 10.92 127.77 1.39 3.30 16 23 C 0.64 17.53 8.49 179.11 1.52 19.05 16 24 O -0.61 -20.53 17.35 -4.46 -0.08 -20.61 16 25 H 0.08 1.29 7.69 -2.38 -0.02 1.27 16 26 H 0.10 0.85 8.14 -2.39 -0.02 0.84 16 27 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.22 3.03 8.06 -2.91 -0.02 3.00 16 29 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.09 2.19 6.22 -2.39 -0.01 2.17 16 31 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.05 1.78 3.24 -2.39 -0.01 1.77 16 33 H 0.03 1.25 7.20 -2.39 -0.02 1.24 16 34 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 35 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.09 2.49 7.03 -2.39 -0.02 2.47 16 38 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.09 1.74 8.08 -2.39 -0.02 1.72 16 41 H 0.09 1.59 7.90 -2.39 -0.02 1.58 16 Total: -1.00 -73.70 331.58 4.23 -69.46 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 0.95 Total: 13.11 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: 8.16 Total: 17.51 kcal Atomic # 7 Polarization: -97.14 SS G_CDS: -6.41 Total: -103.55 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -0.15 Total: -39.42 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 1.67 Total: 42.89 kcal Total: -73.70 4.23 -69.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710435362.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.351 kcal (2) G-P(sol) polarization free energy of solvation -73.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds