Wall clock time and date at job start Tue Mar 31 2020 03:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35673 * 116.99877 * 2 1 4 4 C 1.38922 * 119.68072 * 179.97438 * 3 2 1 5 5 C 1.38385 * 119.10926 * 180.02562 * 4 3 2 6 6 C 1.38824 * 118.48587 * 0.02562 * 5 4 3 7 7 C 1.50704 * 120.35477 * 180.02562 * 6 5 4 8 8 N 1.46898 * 109.46843 * 89.99951 * 7 6 5 9 9 C 1.46899 * 111.00298 * 293.95781 * 8 7 6 10 10 C 1.46902 * 110.99904 * 169.99854 * 8 7 6 11 11 C 1.50706 * 109.47004 * 190.00000 * 10 8 7 12 12 O 1.21277 * 120.00224 * 0.02562 * 11 10 8 13 13 N 1.34773 * 119.99763 * 179.97438 * 11 10 8 14 14 C 1.46497 * 120.00239 * 179.97438 * 13 11 10 15 15 C 1.50698 * 109.47578 * 179.97438 * 14 13 11 16 16 H 1.08003 * 119.99768 * 0.02562 * 15 14 13 17 17 C 1.37869 * 120.00040 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99896 * 180.02562 * 17 15 14 19 19 Si 1.86806 * 120.00313 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.47105 * 89.99507 * 19 17 15 21 21 H 1.48500 * 109.47118 * 209.99830 * 19 17 15 22 22 H 1.48498 * 109.46672 * 329.99372 * 19 17 15 23 23 C 1.38046 * 119.29263 * 0.02562 * 6 5 4 24 24 N 1.31967 * 120.83264 * 0.02562 * 23 6 5 25 25 H 1.08993 * 109.47543 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46923 * 300.00138 * 1 2 3 27 27 H 1.09006 * 109.46668 * 59.99889 * 1 2 3 28 28 H 1.07997 * 120.44530 * 0.27676 * 4 3 2 29 29 H 1.08003 * 120.75576 * 180.02562 * 5 4 3 30 30 H 1.08997 * 109.47154 * 209.99640 * 7 6 5 31 31 H 1.08996 * 109.47157 * 330.00474 * 7 6 5 32 32 H 1.08998 * 109.47481 * 59.99640 * 9 8 7 33 33 H 1.08998 * 109.47370 * 180.02562 * 9 8 7 34 34 H 1.08999 * 109.46713 * 299.99525 * 9 8 7 35 35 H 1.08996 * 109.47310 * 309.99967 * 10 8 7 36 36 H 1.09001 * 109.46694 * 70.00143 * 10 8 7 37 37 H 0.97008 * 119.99970 * 0.02562 * 13 11 10 38 38 H 1.09001 * 109.47336 * 300.00493 * 14 13 11 39 39 H 1.09006 * 109.46707 * 60.00071 * 14 13 11 40 40 H 0.97008 * 120.00270 * 179.97438 * 18 17 15 41 41 H 1.07994 * 119.58392 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2739 0.0005 5 6 4.0486 2.5131 0.0011 6 6 3.2506 3.6491 0.0016 7 6 3.8769 5.0198 0.0016 8 7 4.0799 5.4653 -1.3834 9 6 5.0742 4.6267 -2.0659 10 6 4.4654 6.8821 -1.4295 11 6 4.4256 7.3674 -2.8557 12 8 4.1069 6.6081 -3.7460 13 7 4.7430 8.6456 -3.1416 14 6 4.7049 9.1174 -4.5280 15 6 5.0990 10.5711 -4.5752 16 1 5.3530 11.0916 -3.6635 17 6 5.1364 11.2365 -5.7821 18 7 5.4809 12.5050 -5.8233 19 14 4.6978 10.3361 -7.3590 20 1 3.2409 10.4668 -7.6148 21 1 5.4543 10.9260 -8.4926 22 1 5.0498 8.8999 -7.2232 23 6 1.8772 3.5097 0.0021 24 7 1.3187 2.3141 0.0026 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 4.0229 0.3694 -0.0035 29 1 5.1255 2.5946 0.0011 30 1 3.2187 5.7201 0.5158 31 1 4.8376 4.9803 0.5150 32 1 4.7302 3.5925 -2.0784 33 1 5.2055 4.9786 -3.0891 34 1 6.0251 4.6870 -1.5366 35 1 3.7708 7.4675 -0.8270 36 1 5.4749 6.9969 -1.0346 37 1 4.9975 9.2532 -2.4294 38 1 5.4001 8.5323 -5.1302 39 1 3.6956 9.0019 -4.9234 40 1 5.5075 12.9731 -6.6725 41 1 1.2519 4.3902 0.0029 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764372823.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:52 Heat of formation + Delta-G solvation = -25.280229 kcal Electronic energy + Delta-G solvation = -22541.113893 eV Core-core repulsion = 19036.009877 eV Total energy + Delta-G solvation = -3505.104016 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.90383 -39.32804 -38.34618 -36.62258 -34.25712 -32.79947 -32.36706 -31.63315 -29.00556 -28.02484 -27.15869 -26.51199 -23.94393 -23.22325 -21.99239 -21.20688 -19.83994 -18.63376 -17.38586 -17.32198 -16.30385 -16.19605 -15.93634 -15.61806 -15.20380 -14.75751 -14.68390 -14.50884 -14.21861 -14.09568 -13.54445 -13.45620 -13.20687 -12.68943 -12.63268 -12.36551 -12.28828 -12.06639 -11.72480 -11.53800 -11.44893 -11.30417 -11.00894 -10.73737 -10.09467 -9.97873 -9.86081 -9.50560 -9.18301 -8.78433 -8.68800 -8.30692 -8.11585 -6.22442 -4.24740 0.92915 1.01600 2.84575 3.22753 3.27369 3.32854 3.38990 3.41735 3.78752 4.10619 4.27717 4.33130 4.52614 4.65718 4.74883 4.88635 5.02761 5.05347 5.12752 5.14534 5.19274 5.27650 5.33782 5.38678 5.47042 5.52215 5.59339 5.63966 5.69911 6.03118 6.17712 6.20673 6.75714 6.90855 6.96742 6.99379 7.06988 7.23678 7.39075 7.63350 8.13745 8.51400 8.74719 8.95554 9.37906 10.89429 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.031893 B = 0.002534 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.737174 B =11046.831873 C =11399.980735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.311 6.311 3 C 0.316 3.684 4 C -0.192 4.192 5 C -0.034 4.034 6 C -0.162 4.162 7 C 0.102 3.898 8 N -0.519 5.519 9 C 0.017 3.983 10 C 0.035 3.965 11 C 0.500 3.500 12 O -0.540 6.540 13 N -0.708 5.708 14 C 0.222 3.778 15 C -0.544 4.544 16 H 0.079 0.921 17 C 0.077 3.923 18 N -0.893 5.893 19 Si 0.877 3.123 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.261 1.261 23 C 0.163 3.837 24 N -0.541 5.541 25 H 0.094 0.906 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.140 0.860 29 H 0.138 0.862 30 H 0.087 0.913 31 H 0.045 0.955 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.019 0.981 35 H 0.102 0.898 36 H 0.061 0.939 37 H 0.396 0.604 38 H 0.024 0.976 39 H 0.020 0.980 40 H 0.268 0.732 41 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.334 -20.985 16.111 26.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.218 6.218 3 C 0.137 3.863 4 C -0.212 4.212 5 C -0.060 4.060 6 C -0.165 4.165 7 C -0.026 4.026 8 N -0.243 5.243 9 C -0.131 4.131 10 C -0.096 4.096 11 C 0.285 3.715 12 O -0.418 6.418 13 N -0.357 5.357 14 C 0.100 3.900 15 C -0.581 4.581 16 H 0.097 0.903 17 C -0.127 4.127 18 N -0.530 5.530 19 Si 0.704 3.296 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.185 1.185 23 C 0.007 3.993 24 N -0.264 5.264 25 H 0.113 0.887 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.158 0.842 29 H 0.156 0.844 30 H 0.105 0.895 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.110 0.890 34 H 0.038 0.962 35 H 0.120 0.880 36 H 0.079 0.921 37 H 0.229 0.771 38 H 0.042 0.958 39 H 0.038 0.962 40 H 0.077 0.923 41 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -5.787 -21.752 15.068 27.087 hybrid contribution 1.320 0.312 -0.148 1.364 sum -4.467 -21.440 14.920 26.500 Atomic orbital electron populations 1.22849 0.77217 1.02825 1.02574 1.86222 1.22960 1.24732 1.87908 1.19862 0.89431 0.84744 0.92268 1.21009 0.92018 0.99414 1.08777 1.21336 1.00380 0.90904 0.93340 1.20538 0.94877 0.95731 1.05337 1.20923 0.99412 0.92580 0.89698 1.61634 1.47292 1.01362 1.13983 1.22616 0.91480 0.97818 1.01139 1.22018 1.01136 0.90150 0.96261 1.20331 0.78112 0.82758 0.90329 1.90628 1.47827 1.54973 1.48408 1.46173 1.67448 1.10366 1.11747 1.19465 0.96770 0.95321 0.78453 1.21094 1.48167 0.93038 0.95845 0.90265 1.24803 0.94077 0.94723 0.99075 1.69883 1.47210 1.09189 1.26703 0.86808 0.79150 0.80859 0.82814 1.19828 1.20934 1.18524 1.22298 0.92230 0.93453 0.91347 1.67354 1.40854 0.98804 1.19346 0.88736 0.92321 0.92196 0.84230 0.84376 0.89455 0.93666 0.91630 0.88968 0.96235 0.88008 0.92095 0.77107 0.95830 0.96161 0.92264 0.82186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.38 101.05 1.05 1.37 16 2 O -0.31 -3.35 10.48 -18.72 -0.20 -3.54 16 3 C 0.32 3.62 7.49 -17.12 -0.13 3.49 16 4 C -0.19 -1.87 10.04 -39.27 -0.39 -2.26 16 5 C -0.03 -0.31 8.14 -39.31 -0.32 -0.63 16 6 C -0.16 -1.61 4.89 -104.47 -0.51 -2.12 16 7 C 0.10 0.95 5.14 -4.98 -0.03 0.92 16 8 N -0.52 -6.61 4.49 -245.83 -1.10 -7.71 16 9 C 0.02 0.22 8.81 60.06 0.53 0.75 16 10 C 0.04 0.45 5.45 -4.97 -0.03 0.42 16 11 C 0.50 9.16 7.52 -10.98 -0.08 9.07 16 12 O -0.54 -12.01 14.33 5.56 0.08 -11.93 16 13 N -0.71 -13.88 5.55 -61.47 -0.34 -14.22 16 14 C 0.22 5.40 4.50 -5.20 -0.02 5.38 16 15 C -0.54 -14.77 9.83 -34.44 -0.34 -15.11 16 16 H 0.08 2.23 7.84 -52.48 -0.41 1.82 16 17 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 18 N -0.89 -26.37 13.96 55.43 0.77 -25.60 16 19 Si 0.88 21.43 27.47 -169.99 -4.67 16.76 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 23 C 0.16 1.76 10.85 -17.56 -0.19 1.57 16 24 N -0.54 -6.45 9.22 -13.33 -0.12 -6.57 16 25 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 27 H 0.06 0.51 8.11 -51.93 -0.42 0.09 16 28 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 29 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 30 H 0.09 0.68 7.88 -51.93 -0.41 0.27 16 31 H 0.05 0.36 8.07 -51.93 -0.42 -0.06 16 32 H 0.06 0.80 6.17 -51.93 -0.32 0.48 16 33 H 0.09 1.50 5.82 -51.93 -0.30 1.20 16 34 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.10 1.07 7.93 -51.93 -0.41 0.66 16 36 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 37 H 0.40 6.71 8.32 -40.82 -0.34 6.38 16 38 H 0.02 0.61 7.20 -51.93 -0.37 0.23 16 39 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 40 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 344.66 15.07 5.19 5.19 Total: -1.00 -33.71 344.66 -6.87 -40.58 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -5.93 Total: 2.11 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: -0.56 Total: 4.94 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: -0.79 Total: -54.10 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.12 Total: -15.47 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.71 -6.87 -40.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764372823.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.298 kcal (2) G-P(sol) polarization free energy of solvation -33.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds