Wall clock time and date at job start Tue Mar 31 2020 03:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35673 * 116.99877 * 2 1 4 4 C 1.38922 * 119.68072 * 179.97438 * 3 2 1 5 5 C 1.38385 * 119.10926 * 180.02562 * 4 3 2 6 6 C 1.38824 * 118.48587 * 0.02562 * 5 4 3 7 7 C 1.50704 * 120.35477 * 180.02562 * 6 5 4 8 8 N 1.46898 * 109.46843 * 89.99951 * 7 6 5 9 9 C 1.46899 * 111.00298 * 293.95781 * 8 7 6 10 10 C 1.46902 * 110.99904 * 169.99854 * 8 7 6 11 11 C 1.50706 * 109.47004 * 190.00000 * 10 8 7 12 12 O 1.21277 * 120.00224 * 0.02562 * 11 10 8 13 13 N 1.34773 * 119.99763 * 179.97438 * 11 10 8 14 14 C 1.46497 * 120.00239 * 179.97438 * 13 11 10 15 15 C 1.50698 * 109.47578 * 179.97438 * 14 13 11 16 16 H 1.08003 * 119.99768 * 0.02562 * 15 14 13 17 17 C 1.37869 * 120.00040 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99896 * 180.02562 * 17 15 14 19 19 Si 1.86806 * 120.00313 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.47105 * 89.99507 * 19 17 15 21 21 H 1.48500 * 109.47118 * 209.99830 * 19 17 15 22 22 H 1.48498 * 109.46672 * 329.99372 * 19 17 15 23 23 C 1.38046 * 119.29263 * 0.02562 * 6 5 4 24 24 N 1.31967 * 120.83264 * 0.02562 * 23 6 5 25 25 H 1.08993 * 109.47543 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46923 * 300.00138 * 1 2 3 27 27 H 1.09006 * 109.46668 * 59.99889 * 1 2 3 28 28 H 1.07997 * 120.44530 * 0.27676 * 4 3 2 29 29 H 1.08003 * 120.75576 * 180.02562 * 5 4 3 30 30 H 1.08997 * 109.47154 * 209.99640 * 7 6 5 31 31 H 1.08996 * 109.47157 * 330.00474 * 7 6 5 32 32 H 1.08998 * 109.47481 * 59.99640 * 9 8 7 33 33 H 1.08998 * 109.47370 * 180.02562 * 9 8 7 34 34 H 1.08999 * 109.46713 * 299.99525 * 9 8 7 35 35 H 1.08996 * 109.47310 * 309.99967 * 10 8 7 36 36 H 1.09001 * 109.46694 * 70.00143 * 10 8 7 37 37 H 0.97008 * 119.99970 * 0.02562 * 13 11 10 38 38 H 1.09001 * 109.47336 * 300.00493 * 14 13 11 39 39 H 1.09006 * 109.46707 * 60.00071 * 14 13 11 40 40 H 0.97008 * 120.00270 * 179.97438 * 18 17 15 41 41 H 1.07994 * 119.58392 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2739 0.0005 5 6 4.0486 2.5131 0.0011 6 6 3.2506 3.6491 0.0016 7 6 3.8769 5.0198 0.0016 8 7 4.0799 5.4653 -1.3834 9 6 5.0742 4.6267 -2.0659 10 6 4.4654 6.8821 -1.4295 11 6 4.4256 7.3674 -2.8557 12 8 4.1069 6.6081 -3.7460 13 7 4.7430 8.6456 -3.1416 14 6 4.7049 9.1174 -4.5280 15 6 5.0990 10.5711 -4.5752 16 1 5.3530 11.0916 -3.6635 17 6 5.1364 11.2365 -5.7821 18 7 5.4809 12.5050 -5.8233 19 14 4.6978 10.3361 -7.3590 20 1 3.2409 10.4668 -7.6148 21 1 5.4543 10.9260 -8.4926 22 1 5.0498 8.8999 -7.2232 23 6 1.8772 3.5097 0.0021 24 7 1.3187 2.3141 0.0026 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 4.0229 0.3694 -0.0035 29 1 5.1255 2.5946 0.0011 30 1 3.2187 5.7201 0.5158 31 1 4.8376 4.9803 0.5150 32 1 4.7302 3.5925 -2.0784 33 1 5.2055 4.9786 -3.0891 34 1 6.0251 4.6870 -1.5366 35 1 3.7708 7.4675 -0.8270 36 1 5.4749 6.9969 -1.0346 37 1 4.9975 9.2532 -2.4294 38 1 5.4001 8.5323 -5.1302 39 1 3.6956 9.0019 -4.9234 40 1 5.5075 12.9731 -6.6725 41 1 1.2519 4.3902 0.0029 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764372823.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:51 Heat of formation + Delta-G solvation = -52.756830 kcal Electronic energy + Delta-G solvation = -22542.305368 eV Core-core repulsion = 19036.009877 eV Total energy + Delta-G solvation = -3506.295490 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.65738 -40.67233 -39.18847 -37.63032 -36.04270 -34.38298 -33.57446 -32.42519 -30.58427 -28.73799 -28.53444 -27.36659 -24.91959 -24.22632 -23.50198 -22.15087 -21.35368 -19.36717 -19.13747 -18.09927 -17.77373 -17.27776 -16.97127 -16.74214 -16.45097 -15.82246 -15.76986 -15.68994 -15.43158 -15.10644 -14.83496 -14.45578 -14.31775 -14.12755 -14.02958 -13.76043 -13.17796 -13.05039 -12.83298 -12.73194 -12.64585 -12.45024 -12.29129 -12.07838 -11.93640 -11.64009 -10.91269 -10.83819 -10.73434 -10.56063 -9.86453 -9.45989 -9.16644 -8.39494 -6.45879 0.16597 0.28895 1.32538 1.35046 1.47254 1.82039 2.15917 2.27939 2.34550 2.77268 2.96045 3.25846 3.38190 3.81015 3.96229 3.99859 4.06512 4.20219 4.35810 4.41484 4.41753 4.45062 4.51053 4.56477 4.67051 4.74033 4.80936 4.82362 4.87018 4.98088 5.05348 5.15683 5.28479 5.30830 5.49463 5.59086 5.93690 6.10908 6.13674 6.24025 6.55832 6.86541 6.93082 7.17805 7.51291 8.75065 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.031893 B = 0.002534 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.737174 B =11046.831873 C =11399.980735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.323 6.323 3 C 0.294 3.706 4 C -0.196 4.196 5 C -0.031 4.031 6 C -0.165 4.165 7 C 0.107 3.893 8 N -0.541 5.541 9 C 0.023 3.977 10 C 0.048 3.952 11 C 0.497 3.503 12 O -0.583 6.583 13 N -0.708 5.708 14 C 0.234 3.766 15 C -0.544 4.544 16 H 0.061 0.939 17 C 0.026 3.974 18 N -0.931 5.931 19 Si 0.936 3.064 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.262 1.262 23 C 0.147 3.853 24 N -0.561 5.561 25 H 0.122 0.878 26 H 0.057 0.943 27 H 0.050 0.950 28 H 0.157 0.843 29 H 0.163 0.837 30 H 0.105 0.895 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.052 0.948 34 H 0.042 0.958 35 H 0.132 0.868 36 H 0.090 0.910 37 H 0.409 0.591 38 H 0.009 0.991 39 H 0.007 0.993 40 H 0.272 0.728 41 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.965 -22.057 17.425 28.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.231 6.231 3 C 0.116 3.884 4 C -0.216 4.216 5 C -0.057 4.057 6 C -0.168 4.168 7 C -0.020 4.020 8 N -0.266 5.266 9 C -0.125 4.125 10 C -0.082 4.082 11 C 0.284 3.716 12 O -0.463 6.463 13 N -0.359 5.359 14 C 0.110 3.890 15 C -0.582 4.582 16 H 0.080 0.920 17 C -0.175 4.175 18 N -0.570 5.570 19 Si 0.760 3.240 20 H -0.192 1.192 21 H -0.199 1.199 22 H -0.186 1.186 23 C -0.009 4.009 24 N -0.285 5.285 25 H 0.140 0.860 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.174 0.826 29 H 0.181 0.819 30 H 0.123 0.877 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.150 0.850 36 H 0.108 0.892 37 H 0.245 0.755 38 H 0.027 0.973 39 H 0.025 0.975 40 H 0.081 0.919 41 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -5.417 -22.827 16.427 28.641 hybrid contribution 1.192 0.617 -0.489 1.428 sum -4.226 -22.211 15.938 27.662 Atomic orbital electron populations 1.23003 0.76134 1.04484 1.02009 1.86204 1.24150 1.24711 1.87993 1.20211 0.90319 0.84848 0.93065 1.21300 0.91574 1.00574 1.08188 1.21651 1.01570 0.90310 0.92153 1.20681 0.94576 0.96524 1.04990 1.20986 1.00894 0.92327 0.87829 1.61536 1.47575 1.01196 1.16289 1.22464 0.92842 0.97807 0.99369 1.21971 1.03729 0.90530 0.91992 1.21371 0.76196 0.81444 0.92557 1.90618 1.49372 1.55836 1.50460 1.46022 1.68141 1.11581 1.10183 1.19024 0.95347 0.93415 0.81204 1.21311 1.47339 0.94320 0.95245 0.92041 1.25591 0.94163 0.95396 1.02320 1.69981 1.48632 1.10592 1.27771 0.85873 0.79202 0.79514 0.79368 1.19163 1.19866 1.18622 1.22576 0.93134 0.93453 0.91745 1.67320 1.41668 0.99377 1.20110 0.85999 0.92465 0.93143 0.82557 0.81921 0.87659 0.91362 0.91341 0.92875 0.93942 0.85034 0.89197 0.75523 0.97268 0.97464 0.91898 0.81332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 10.38 113.37 1.18 1.77 16 2 O -0.32 -6.81 10.48 -89.90 -0.94 -7.75 16 3 C 0.29 6.57 7.49 84.79 0.63 7.20 16 4 C -0.20 -3.51 10.04 22.47 0.23 -3.28 16 5 C -0.03 -0.49 8.14 22.45 0.18 -0.30 16 6 C -0.16 -2.88 4.89 -19.77 -0.10 -2.97 16 7 C 0.11 1.58 5.14 85.56 0.44 2.02 16 8 N -0.54 -12.22 4.49 -931.66 -4.18 -16.40 16 9 C 0.02 0.55 8.81 127.69 1.12 1.67 16 10 C 0.05 1.07 5.45 85.56 0.47 1.53 16 11 C 0.50 17.49 7.52 87.66 0.66 18.15 16 12 O -0.58 -25.79 14.33 -3.02 -0.04 -25.84 16 13 N -0.71 -27.08 5.55 -466.79 -2.59 -29.67 16 14 C 0.23 11.38 4.50 85.63 0.38 11.76 16 15 C -0.54 -29.73 9.83 25.60 0.25 -29.48 16 16 H 0.06 3.50 7.84 -2.91 -0.02 3.47 16 17 C 0.03 1.44 5.47 84.65 0.46 1.90 16 18 N -0.93 -55.35 13.96 21.44 0.30 -55.05 16 19 Si 0.94 44.26 27.47 68.60 1.88 46.15 16 20 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 21 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 22 H -0.26 -12.32 6.54 99.48 0.65 -11.67 16 23 C 0.15 2.98 10.85 84.63 0.92 3.90 16 24 N -0.56 -13.15 9.22 -308.95 -2.85 -16.00 16 25 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.06 0.88 8.10 -2.39 -0.02 0.86 16 27 H 0.05 0.86 8.11 -2.38 -0.02 0.84 16 28 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 29 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 30 H 0.11 1.20 7.88 -2.39 -0.02 1.18 16 31 H 0.07 0.74 8.07 -2.39 -0.02 0.72 16 32 H 0.07 1.54 6.17 -2.39 -0.01 1.53 16 33 H 0.05 1.70 5.82 -2.39 -0.01 1.69 16 34 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.13 2.18 7.93 -2.39 -0.02 2.16 16 36 H 0.09 1.54 8.12 -2.39 -0.02 1.52 16 37 H 0.41 13.29 8.32 -92.70 -0.77 12.52 16 38 H 0.01 0.48 7.20 -2.39 -0.02 0.47 16 39 H 0.01 0.38 7.57 -2.38 -0.02 0.36 16 40 H 0.27 15.08 8.31 -92.70 -0.77 14.31 16 41 H 0.17 2.91 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -74.05 344.66 -1.38 -75.43 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.21 Total: 15.25 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: 6.83 Total: 13.88 kcal Atomic # 7 Polarization: -107.80 SS G_CDS: -9.32 Total: -117.12 kcal Atomic # 8 Polarization: -32.60 SS G_CDS: -0.99 Total: -33.59 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.88 Total: 46.15 kcal Total: -74.05 -1.38 -75.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764372823.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.676 kcal (2) G-P(sol) polarization free energy of solvation -74.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds