Wall clock time and date at job start Tue Mar 31 2020 03:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34948 * 126.03442 * 2 1 4 4 C 1.35324 * 107.74779 * 180.14724 * 3 2 1 5 5 C 1.50694 * 126.04136 * 179.87399 * 4 3 2 6 6 C 1.50705 * 109.47138 * 269.71224 * 5 4 3 7 7 O 1.20824 * 119.99694 * 0.02562 * 6 5 4 8 8 O 1.34224 * 119.99921 * 180.02562 * 6 5 4 9 9 C 1.45205 * 116.99833 * 180.02562 * 8 6 5 10 10 C 1.53350 * 109.41616 * 270.12530 * 9 8 6 11 11 C 1.53198 * 109.14641 * 178.67682 * 10 9 8 12 12 N 1.46925 * 108.89335 * 54.57862 * 11 10 9 13 13 C 1.36931 * 120.63201 * 126.29969 * 12 11 10 14 14 H 1.08005 * 119.99889 * 331.83485 * 13 12 11 15 15 C 1.38813 * 120.00220 * 151.82683 * 13 12 11 16 16 N 1.31618 * 120.00004 * 343.08678 * 15 13 12 17 17 Si 1.86806 * 119.99953 * 163.08567 * 15 13 12 18 18 H 1.48496 * 109.47191 * 90.00149 * 17 15 13 19 19 H 1.48501 * 109.46981 * 210.00196 * 17 15 13 20 20 H 1.48500 * 109.46794 * 329.99854 * 17 15 13 21 21 C 1.46925 * 118.73856 * 306.31536 * 12 11 10 22 22 C 1.53044 * 109.45809 * 149.99841 * 9 8 6 23 23 C 1.39874 * 107.91604 * 359.61136 * 4 3 2 24 24 N 1.30840 * 108.20340 * 0.23923 * 23 4 3 25 25 H 1.09004 * 109.46941 * 270.25714 * 1 2 3 26 26 H 1.08997 * 109.47472 * 30.25942 * 1 2 3 27 27 H 1.08997 * 109.47070 * 150.26422 * 1 2 3 28 28 H 1.07996 * 126.13142 * 0.02562 * 3 2 1 29 29 H 1.09000 * 109.46786 * 149.71629 * 5 4 3 30 30 H 1.08997 * 109.47474 * 29.71663 * 5 4 3 31 31 H 1.08997 * 109.45868 * 30.02863 * 9 8 6 32 32 H 1.08996 * 109.68537 * 58.71446 * 10 9 8 33 33 H 1.09000 * 109.47180 * 298.51362 * 10 9 8 34 34 H 1.08997 * 109.58387 * 294.71773 * 11 10 9 35 35 H 1.08993 * 109.58533 * 174.43928 * 11 10 9 36 36 H 0.96996 * 119.99787 * 179.97438 * 16 15 13 37 37 H 1.08998 * 109.58495 * 173.39541 * 21 12 11 38 38 H 1.09000 * 109.58924 * 293.68296 * 21 12 11 39 39 H 1.08996 * 109.49900 * 61.43335 * 22 9 8 40 40 H 1.08999 * 109.52516 * 301.35175 * 22 9 8 41 41 H 1.08000 * 125.89840 * 180.25916 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5438 0.6667 -0.0033 5 6 4.7679 1.5454 -0.0072 6 6 5.1763 1.8318 -1.4294 7 8 4.5383 1.3700 -2.3456 8 8 6.2486 2.5998 -1.6780 9 6 6.5829 2.8338 -3.0715 10 6 7.5407 1.7389 -3.5569 11 6 7.8631 1.9729 -5.0361 12 7 8.3741 3.3405 -5.2011 13 6 9.5738 3.5670 -5.8212 14 1 10.3481 2.8147 -5.7904 15 6 9.7947 4.7634 -6.4896 16 7 8.7775 5.5311 -6.8185 17 14 11.5358 5.2838 -6.9224 18 1 11.8913 4.7558 -8.2640 19 1 11.6205 6.7663 -6.9355 20 1 12.4797 4.7430 -5.9115 21 6 7.5737 4.4605 -4.6877 22 6 7.2538 4.2022 -3.2119 23 6 3.5347 -0.7320 0.0036 24 7 2.2892 -1.1327 0.0056 25 1 -0.3633 0.0046 1.0277 26 1 -0.3634 0.8876 -0.5178 27 1 -0.3633 -0.8923 -0.5097 28 1 1.9281 2.1193 0.0004 29 1 5.5820 1.0367 0.5091 30 1 4.5441 2.4827 0.5023 31 1 5.6734 2.8120 -3.6717 32 1 7.0725 0.7620 -3.4367 33 1 8.4607 1.7763 -2.9736 34 1 6.9589 1.8464 -5.6316 35 1 8.6187 1.2586 -5.3628 36 1 8.9319 6.3672 -7.2852 37 1 8.1394 5.3874 -4.7821 38 1 6.6471 4.5384 -5.2565 39 1 8.1764 4.2163 -2.6318 40 1 6.5811 4.9772 -2.8445 41 1 4.4055 -1.3709 0.0071 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000770787488.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:37 Heat of formation + Delta-G solvation = 11.690498 kcal Electronic energy + Delta-G solvation = -23205.107694 eV Core-core repulsion = 19701.606849 eV Total energy + Delta-G solvation = -3503.500845 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.44560 -40.09595 -37.42811 -35.72879 -33.88438 -32.70511 -31.98143 -30.34751 -29.63438 -28.64841 -26.27813 -25.02108 -22.58002 -22.13310 -21.31904 -21.05197 -19.96608 -19.26957 -17.40346 -17.13784 -16.83545 -15.96344 -15.74559 -15.42369 -14.81175 -14.63046 -13.95085 -13.87950 -13.57424 -13.37382 -13.19368 -13.00059 -12.97452 -12.63938 -12.60049 -12.36660 -12.00420 -11.50206 -11.18447 -11.00696 -10.79717 -10.73327 -10.68657 -10.40887 -10.19539 -10.15209 -9.86948 -9.63891 -9.60142 -9.40250 -8.62042 -8.48845 -6.71700 -5.81385 -3.23744 1.67422 2.29848 2.47024 2.50973 3.26146 3.37753 3.44356 3.47117 4.25339 4.48593 4.59360 4.80485 4.82659 4.89219 5.07187 5.08333 5.20617 5.29318 5.38897 5.43961 5.47597 5.55912 5.57952 5.78159 5.87263 6.04082 6.25668 6.38451 6.45251 6.48006 6.53692 6.61229 6.74854 6.77104 6.91821 7.02959 7.29907 7.49016 7.59177 7.78228 8.11940 8.42589 9.18450 9.81338 10.38237 11.27952 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.044434 B = 0.002755 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.990933 B =10162.741639 C =10239.747956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.377 5.377 3 C 0.073 3.927 4 C -0.229 4.229 5 C -0.032 4.032 6 C 0.453 3.547 7 O -0.505 6.505 8 O -0.360 6.360 9 C 0.099 3.901 10 C -0.145 4.145 11 C 0.148 3.852 12 N -0.593 5.593 13 C -0.253 4.253 14 H 0.067 0.933 15 C 0.002 3.998 16 N -0.904 5.904 17 Si 0.904 3.096 18 H -0.287 1.287 19 H -0.289 1.289 20 H -0.279 1.279 21 C 0.174 3.826 22 C -0.135 4.135 23 C 0.066 3.934 24 N -0.299 5.299 25 H 0.074 0.926 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.174 0.826 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.077 0.923 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.021 0.979 35 H 0.060 0.940 36 H 0.255 0.745 37 H 0.096 0.904 38 H 0.021 0.979 39 H 0.067 0.933 40 H 0.057 0.943 41 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.466 -6.910 16.727 22.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.159 5.159 3 C -0.074 4.074 4 C -0.240 4.240 5 C -0.071 4.071 6 C 0.295 3.705 7 O -0.392 6.392 8 O -0.277 6.277 9 C 0.045 3.955 10 C -0.185 4.185 11 C 0.022 3.978 12 N -0.315 5.315 13 C -0.383 4.383 14 H 0.084 0.916 15 C -0.196 4.196 16 N -0.548 5.548 17 Si 0.733 3.267 18 H -0.214 1.214 19 H -0.215 1.215 20 H -0.204 1.204 21 C 0.048 3.952 22 C -0.174 4.174 23 C -0.120 4.120 24 N -0.120 5.120 25 H 0.092 0.908 26 H 0.106 0.894 27 H 0.107 0.893 28 H 0.191 0.809 29 H 0.129 0.871 30 H 0.125 0.875 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.039 0.961 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.114 0.886 38 H 0.039 0.961 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -14.595 -7.887 16.306 23.262 hybrid contribution 1.252 1.027 -0.447 1.680 sum -13.343 -6.860 15.859 21.831 Atomic orbital electron populations 1.21852 0.74171 1.04651 1.03218 1.48406 1.06651 1.03858 1.56945 1.22281 0.90769 0.93426 1.00875 1.19444 0.93372 0.93794 1.17426 1.19505 0.95882 1.00597 0.91129 1.23698 0.78317 0.75874 0.92606 1.90652 1.53090 1.48427 1.47044 1.86548 1.44624 1.63464 1.33066 1.22960 0.98164 0.97180 0.77192 1.22502 0.98970 0.96710 1.00291 1.20857 0.97184 0.88607 0.91174 1.44113 1.21575 0.99726 1.66133 1.19186 0.89914 1.02432 1.26740 0.91553 1.25068 0.97345 0.99524 0.97711 1.70020 1.28736 1.13981 1.42091 0.86280 0.84447 0.77635 0.78315 1.21366 1.21521 1.20422 1.20808 0.94873 0.93379 0.86189 1.22440 0.99805 0.92881 1.02285 1.23755 0.95277 0.94297 0.98680 1.77352 1.01604 1.08184 1.24854 0.90788 0.89436 0.89267 0.80931 0.87111 0.87457 0.90534 0.92653 0.91397 0.96139 0.92168 0.93544 0.88610 0.96057 0.91469 0.92463 0.80025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.61 11.47 59.85 0.69 1.29 16 2 N -0.38 -3.94 4.01 -68.16 -0.27 -4.22 16 3 C 0.07 0.73 11.40 -17.22 -0.20 0.53 16 4 C -0.23 -2.53 4.59 -105.05 -0.48 -3.02 16 5 C -0.03 -0.32 6.30 -29.04 -0.18 -0.50 16 6 C 0.45 6.72 7.92 36.01 0.29 7.00 16 7 O -0.50 -9.20 15.25 -18.75 -0.29 -9.49 16 8 O -0.36 -5.90 9.88 -39.24 -0.39 -6.29 16 9 C 0.10 1.85 2.42 -26.53 -0.06 1.79 16 10 C -0.15 -2.76 5.75 -26.45 -0.15 -2.91 16 11 C 0.15 3.25 6.50 -3.71 -0.02 3.22 16 12 N -0.59 -15.05 2.99 -172.32 -0.52 -15.57 16 13 C -0.25 -6.96 9.58 -15.06 -0.14 -7.11 16 14 H 0.07 1.79 7.89 -52.48 -0.41 1.37 16 15 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 16 N -0.90 -26.14 11.20 55.49 0.62 -25.52 16 17 Si 0.90 21.58 29.59 -169.99 -5.03 16.55 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 C 0.17 4.16 5.30 -3.71 -0.02 4.14 16 22 C -0.13 -2.64 5.74 -26.61 -0.15 -2.80 16 23 C 0.07 0.78 11.96 -17.36 -0.21 0.57 16 24 N -0.30 -3.82 12.58 30.63 0.39 -3.44 16 25 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.17 1.17 8.06 -52.49 -0.42 0.75 16 29 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 1.54 7.16 -51.93 -0.37 1.17 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 1.27 7.93 -51.93 -0.41 0.86 16 36 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.10 2.52 6.06 -51.93 -0.31 2.21 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.18 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 343.71 15.07 5.18 5.18 Total: -1.00 -34.34 343.71 -7.19 -41.53 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -6.14 Total: -0.91 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -0.74 Total: 2.18 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: 0.22 Total: -48.75 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.67 Total: -15.77 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.34 -7.19 -41.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770787488.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.219 kcal (2) G-P(sol) polarization free energy of solvation -34.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds