Wall clock time and date at job start Tue Mar 31 2020 03:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34948 * 126.03442 * 2 1 4 4 C 1.35324 * 107.74779 * 180.14724 * 3 2 1 5 5 C 1.50694 * 126.04136 * 179.87399 * 4 3 2 6 6 C 1.50705 * 109.47138 * 269.71224 * 5 4 3 7 7 O 1.20824 * 119.99694 * 0.02562 * 6 5 4 8 8 O 1.34224 * 119.99921 * 180.02562 * 6 5 4 9 9 C 1.45205 * 116.99833 * 180.02562 * 8 6 5 10 10 C 1.53350 * 109.41616 * 270.12530 * 9 8 6 11 11 C 1.53198 * 109.14641 * 178.67682 * 10 9 8 12 12 N 1.46925 * 108.89335 * 54.57862 * 11 10 9 13 13 C 1.36931 * 120.63201 * 126.29969 * 12 11 10 14 14 H 1.08005 * 119.99889 * 331.83485 * 13 12 11 15 15 C 1.38813 * 120.00220 * 151.82683 * 13 12 11 16 16 N 1.31618 * 120.00004 * 343.08678 * 15 13 12 17 17 Si 1.86806 * 119.99953 * 163.08567 * 15 13 12 18 18 H 1.48496 * 109.47191 * 90.00149 * 17 15 13 19 19 H 1.48501 * 109.46981 * 210.00196 * 17 15 13 20 20 H 1.48500 * 109.46794 * 329.99854 * 17 15 13 21 21 C 1.46925 * 118.73856 * 306.31536 * 12 11 10 22 22 C 1.53044 * 109.45809 * 149.99841 * 9 8 6 23 23 C 1.39874 * 107.91604 * 359.61136 * 4 3 2 24 24 N 1.30840 * 108.20340 * 0.23923 * 23 4 3 25 25 H 1.09004 * 109.46941 * 270.25714 * 1 2 3 26 26 H 1.08997 * 109.47472 * 30.25942 * 1 2 3 27 27 H 1.08997 * 109.47070 * 150.26422 * 1 2 3 28 28 H 1.07996 * 126.13142 * 0.02562 * 3 2 1 29 29 H 1.09000 * 109.46786 * 149.71629 * 5 4 3 30 30 H 1.08997 * 109.47474 * 29.71663 * 5 4 3 31 31 H 1.08997 * 109.45868 * 30.02863 * 9 8 6 32 32 H 1.08996 * 109.68537 * 58.71446 * 10 9 8 33 33 H 1.09000 * 109.47180 * 298.51362 * 10 9 8 34 34 H 1.08997 * 109.58387 * 294.71773 * 11 10 9 35 35 H 1.08993 * 109.58533 * 174.43928 * 11 10 9 36 36 H 0.96996 * 119.99787 * 179.97438 * 16 15 13 37 37 H 1.08998 * 109.58495 * 173.39541 * 21 12 11 38 38 H 1.09000 * 109.58924 * 293.68296 * 21 12 11 39 39 H 1.08996 * 109.49900 * 61.43335 * 22 9 8 40 40 H 1.08999 * 109.52516 * 301.35175 * 22 9 8 41 41 H 1.08000 * 125.89840 * 180.25916 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5438 0.6667 -0.0033 5 6 4.7679 1.5454 -0.0072 6 6 5.1763 1.8318 -1.4294 7 8 4.5383 1.3700 -2.3456 8 8 6.2486 2.5998 -1.6780 9 6 6.5829 2.8338 -3.0715 10 6 7.5407 1.7389 -3.5569 11 6 7.8631 1.9729 -5.0361 12 7 8.3741 3.3405 -5.2011 13 6 9.5738 3.5670 -5.8212 14 1 10.3481 2.8147 -5.7904 15 6 9.7947 4.7634 -6.4896 16 7 8.7775 5.5311 -6.8185 17 14 11.5358 5.2838 -6.9224 18 1 11.8913 4.7558 -8.2640 19 1 11.6205 6.7663 -6.9355 20 1 12.4797 4.7430 -5.9115 21 6 7.5737 4.4605 -4.6877 22 6 7.2538 4.2022 -3.2119 23 6 3.5347 -0.7320 0.0036 24 7 2.2892 -1.1327 0.0056 25 1 -0.3633 0.0046 1.0277 26 1 -0.3634 0.8876 -0.5178 27 1 -0.3633 -0.8923 -0.5097 28 1 1.9281 2.1193 0.0004 29 1 5.5820 1.0367 0.5091 30 1 4.5441 2.4827 0.5023 31 1 5.6734 2.8120 -3.6717 32 1 7.0725 0.7620 -3.4367 33 1 8.4607 1.7763 -2.9736 34 1 6.9589 1.8464 -5.6316 35 1 8.6187 1.2586 -5.3628 36 1 8.9319 6.3672 -7.2852 37 1 8.1394 5.3874 -4.7821 38 1 6.6471 4.5384 -5.2565 39 1 8.1764 4.2163 -2.6318 40 1 6.5811 4.9772 -2.8445 41 1 4.4055 -1.3709 0.0071 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000770787488.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:36 Heat of formation + Delta-G solvation = -9.069660 kcal Electronic energy + Delta-G solvation = -23206.007922 eV Core-core repulsion = 19701.606849 eV Total energy + Delta-G solvation = -3504.401073 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.24208 -41.35001 -39.05249 -37.20400 -34.68371 -34.49017 -32.86255 -32.09013 -31.43236 -29.42245 -27.33685 -26.61038 -24.19963 -23.82790 -22.27153 -22.05860 -21.03792 -20.85462 -18.86592 -18.62506 -17.79420 -17.16158 -17.06769 -16.68152 -16.20466 -15.63908 -15.41562 -15.35025 -14.94800 -14.81450 -14.37206 -14.33278 -14.07189 -13.88189 -13.44935 -13.28696 -13.21348 -13.04928 -12.84655 -12.60470 -12.52205 -12.44831 -12.12632 -11.96532 -11.83662 -11.58578 -11.49219 -11.32039 -11.00883 -10.55816 -10.37180 -9.39429 -8.75417 -7.90320 -5.36354 0.92230 1.36349 1.47828 1.49901 1.51014 1.60353 1.71431 2.17398 2.51200 3.26577 3.58225 3.61387 3.80879 3.87992 3.91939 3.97897 4.19148 4.23391 4.29532 4.38996 4.44132 4.47556 4.57578 4.68561 4.75075 4.76768 4.87040 4.88125 4.93329 5.00843 5.06040 5.13302 5.23088 5.41570 5.57322 5.63370 5.66870 5.76795 6.12972 6.36585 6.71241 6.91487 7.11406 7.79774 8.33083 9.17550 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.044434 B = 0.002755 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.990933 B =10162.741639 C =10239.747956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.382 5.382 3 C 0.074 3.926 4 C -0.250 4.250 5 C -0.019 4.019 6 C 0.453 3.547 7 O -0.542 6.542 8 O -0.355 6.355 9 C 0.107 3.893 10 C -0.132 4.132 11 C 0.146 3.854 12 N -0.610 5.610 13 C -0.267 4.267 14 H 0.069 0.931 15 C -0.049 4.049 16 N -0.936 5.936 17 Si 0.971 3.029 18 H -0.285 1.285 19 H -0.290 1.290 20 H -0.269 1.269 21 C 0.180 3.820 22 C -0.120 4.120 23 C 0.052 3.948 24 N -0.339 5.339 25 H 0.092 0.908 26 H 0.110 0.890 27 H 0.086 0.914 28 H 0.204 0.796 29 H 0.136 0.864 30 H 0.140 0.860 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.010 0.990 35 H 0.064 0.936 36 H 0.252 0.748 37 H 0.068 0.932 38 H -0.002 1.002 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.491 -6.851 18.694 24.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.164 5.164 3 C -0.074 4.074 4 C -0.261 4.261 5 C -0.058 4.058 6 C 0.297 3.703 7 O -0.431 6.431 8 O -0.272 6.272 9 C 0.052 3.948 10 C -0.171 4.171 11 C 0.020 3.980 12 N -0.334 5.334 13 C -0.396 4.396 14 H 0.087 0.913 15 C -0.245 4.245 16 N -0.582 5.582 17 Si 0.798 3.202 18 H -0.212 1.212 19 H -0.217 1.217 20 H -0.194 1.194 21 C 0.054 3.946 22 C -0.159 4.159 23 C -0.133 4.133 24 N -0.160 5.160 25 H 0.111 0.889 26 H 0.128 0.872 27 H 0.105 0.895 28 H 0.221 0.779 29 H 0.154 0.846 30 H 0.157 0.843 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.028 0.972 35 H 0.083 0.917 36 H 0.061 0.939 37 H 0.087 0.913 38 H 0.016 0.984 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -14.636 -7.860 18.305 24.720 hybrid contribution 1.128 0.950 -1.056 1.813 sum -13.508 -6.910 17.249 22.973 Atomic orbital electron populations 1.22185 0.72076 1.05668 1.04792 1.48791 1.07997 1.03459 1.56113 1.22865 0.90630 0.94626 0.99259 1.19671 0.94279 0.93631 1.18556 1.19642 0.96206 1.02197 0.87717 1.24762 0.76940 0.74314 0.94272 1.90650 1.54043 1.49788 1.48661 1.86555 1.45623 1.64124 1.30848 1.22578 0.97181 0.96395 0.78653 1.22306 0.99355 0.97470 0.97962 1.20947 0.96702 0.87160 0.93201 1.44374 1.21436 1.01186 1.66409 1.19523 0.90864 1.02673 1.26586 0.91313 1.25850 1.00984 0.99625 0.98003 1.70173 1.30689 1.14220 1.43088 0.85234 0.80025 0.76870 0.78038 1.21218 1.21659 1.19356 1.20598 0.93112 0.92157 0.88769 1.22153 1.00534 0.94347 0.98909 1.24121 0.95532 0.95239 0.98449 1.77278 1.02455 1.09921 1.26382 0.88936 0.87159 0.89549 0.77878 0.84626 0.84255 0.92218 0.91386 0.90928 0.97198 0.91723 0.93884 0.91334 0.98363 0.91244 0.90311 0.78809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.93 11.47 127.77 1.47 2.39 16 2 N -0.38 -7.38 4.01 -369.56 -1.48 -8.87 16 3 C 0.07 1.29 11.40 83.54 0.95 2.25 16 4 C -0.25 -4.97 4.59 -20.14 -0.09 -5.07 16 5 C -0.02 -0.32 6.30 29.10 0.18 -0.14 16 6 C 0.45 12.37 7.92 71.24 0.56 12.94 16 7 O -0.54 -19.12 15.25 21.97 0.34 -18.79 16 8 O -0.35 -10.75 9.88 -51.36 -0.51 -11.26 16 9 C 0.11 3.87 2.42 30.73 0.07 3.95 16 10 C -0.13 -4.85 5.75 30.78 0.18 -4.67 16 11 C 0.15 6.38 6.50 86.36 0.56 6.94 16 12 N -0.61 -31.35 2.99 -699.09 -2.09 -33.44 16 13 C -0.27 -14.75 9.58 84.03 0.81 -13.94 16 14 H 0.07 3.69 7.89 -2.91 -0.02 3.66 16 15 C -0.05 -2.75 4.92 84.86 0.42 -2.33 16 16 N -0.94 -55.26 11.20 21.65 0.24 -55.02 16 17 Si 0.97 44.56 29.59 68.60 2.03 46.59 16 18 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 19 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 21 C 0.18 8.76 5.30 86.36 0.46 9.21 16 22 C -0.12 -4.61 5.74 30.68 0.18 -4.44 16 23 C 0.05 1.16 11.96 85.24 1.02 2.18 16 24 N -0.34 -8.44 12.58 -57.02 -0.72 -9.15 16 25 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 26 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.20 2.05 8.06 -2.91 -0.02 2.02 16 29 H 0.14 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.14 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.06 2.39 7.16 -2.39 -0.02 2.38 16 32 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 34 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.06 2.72 7.93 -2.39 -0.02 2.70 16 36 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 37 H 0.07 3.71 6.06 -2.39 -0.01 3.69 16 38 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 39 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 40 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 41 H 0.20 3.43 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -75.16 343.71 5.59 -69.57 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: 1.02 Total: 11.09 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: 6.76 Total: 9.28 kcal Atomic # 7 Polarization: -102.43 SS G_CDS: -4.05 Total: -106.48 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -0.17 Total: -30.04 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -75.16 5.59 -69.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770787488.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.501 kcal (2) G-P(sol) polarization free energy of solvation -75.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds