Wall clock time and date at job start Tue Mar 31 2020 03:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 113.99950 * 2 1 4 4 C 1.52998 * 109.47389 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47242 * 64.99333 * 4 3 2 6 6 C 1.36833 * 120.00499 * 265.20336 * 5 4 3 7 7 H 1.07994 * 120.00483 * 133.20251 * 6 5 4 8 8 C 1.39056 * 119.99668 * 313.21043 * 6 5 4 9 9 N 1.31358 * 120.00229 * 349.92396 * 8 6 5 10 10 Si 1.86802 * 119.99982 * 169.93210 * 8 6 5 11 11 H 1.48500 * 109.46929 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47301 * 119.99288 * 10 8 6 13 13 H 1.48504 * 109.46762 * 239.99567 * 10 8 6 14 14 C 1.34781 * 119.99577 * 85.20608 * 5 4 3 15 15 O 1.21677 * 119.99927 * 354.41008 * 14 5 4 16 16 C 1.47017 * 119.99776 * 174.14523 * 14 5 4 17 17 C 1.38518 * 126.89593 * 352.73423 * 16 14 5 18 18 C 1.39650 * 105.35119 * 179.97438 * 17 16 14 19 19 C 1.50694 * 126.05944 * 179.97438 * 18 17 16 20 20 C 1.52998 * 117.50442 * 343.74863 * 19 18 17 21 21 C 1.53002 * 117.50086 * 275.08438 * 19 18 17 22 22 N 1.30878 * 107.87639 * 0.02562 * 18 17 16 23 23 N 1.28437 * 110.95459 * 359.74983 * 22 18 17 24 24 C 1.46504 * 125.19910 * 180.26339 * 23 22 18 25 25 H 1.09002 * 109.47880 * 300.00389 * 1 2 3 26 26 H 1.09000 * 109.46882 * 60.00564 * 1 2 3 27 27 H 1.09004 * 109.47005 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47289 * 59.99248 * 3 2 1 29 29 H 1.09007 * 109.46831 * 299.99637 * 3 2 1 30 30 H 1.08998 * 109.46620 * 304.99438 * 4 3 2 31 31 H 1.09004 * 109.47151 * 185.00239 * 4 3 2 32 32 H 0.96998 * 120.00151 * 180.02562 * 9 8 6 33 33 H 1.07996 * 127.32514 * 359.97438 * 17 16 14 34 34 H 1.09005 * 115.54728 * 129.41561 * 19 18 17 35 35 H 1.09007 * 117.49279 * 359.97438 * 20 19 18 36 36 H 1.08991 * 117.50477 * 145.01922 * 20 19 18 37 37 H 1.09001 * 117.50025 * 214.98272 * 21 19 18 38 38 H 1.09003 * 117.49450 * 359.97438 * 21 19 18 39 39 H 1.08998 * 109.47222 * 263.85401 * 24 23 22 40 40 H 1.08997 * 109.46818 * 23.85947 * 24 23 22 41 41 H 1.08996 * 109.46973 * 143.85418 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 4.1924 -0.7862 -1.3060 7 1 3.7919 -1.3640 -2.1258 8 6 4.9271 -1.4143 -0.3064 9 7 5.5792 -0.6961 0.5793 10 14 4.9871 -3.2795 -0.2232 11 1 4.1742 -3.8506 -1.3270 12 1 6.3939 -3.7360 -0.3566 13 1 4.4405 -3.7346 1.0804 14 6 4.1702 1.3227 -2.3477 15 8 3.8820 2.5047 -2.3285 16 6 4.7352 0.7235 -3.5656 17 6 5.2453 -0.5569 -3.7029 18 6 5.6557 -0.6507 -5.0345 19 6 6.2838 -1.8554 -5.6864 20 6 6.8447 -2.9434 -4.7686 21 6 7.7972 -2.0281 -5.5421 22 7 5.3990 0.4937 -5.6154 23 7 4.8579 1.3163 -4.7908 24 6 4.4389 2.6826 -5.1134 25 1 -0.3635 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6884 1.8464 0.8899 29 1 1.6885 1.8463 -0.8901 30 1 3.8506 0.5687 0.8428 31 1 3.9784 2.1766 0.0903 32 1 6.0920 -1.1342 1.2764 33 1 5.3117 -1.3204 -2.9420 34 1 5.8281 -2.1736 -6.6241 35 1 6.7597 -2.7876 -3.6931 36 1 6.7584 -3.9773 -5.1025 37 1 8.3370 -2.4604 -6.3846 38 1 8.3385 -1.2701 -4.9759 39 1 5.2255 3.3809 -4.8278 40 1 4.2535 2.7623 -6.1845 41 1 3.5258 2.9209 -4.5679 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822283485.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:23 Heat of formation + Delta-G solvation = 39.301135 kcal Electronic energy + Delta-G solvation = -24610.061047 eV Core-core repulsion = 21107.757489 eV Total energy + Delta-G solvation = -3502.303557 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.70818 -38.52192 -36.98452 -36.74164 -34.87933 -32.28075 -31.66296 -30.60389 -28.60776 -26.65784 -25.85660 -25.00542 -22.91675 -22.59893 -22.05314 -20.87744 -19.59015 -18.72386 -17.51899 -16.14152 -15.75057 -15.38669 -15.37192 -15.28381 -15.05058 -14.44253 -14.33617 -14.04938 -13.82975 -13.19529 -13.03171 -12.78136 -12.27388 -12.06094 -11.88745 -11.64945 -11.40665 -11.20640 -11.16837 -11.13902 -11.02592 -10.72646 -10.49111 -10.35207 -10.25547 -10.12084 -9.68519 -9.12721 -8.96795 -8.67462 -8.18190 -7.98922 -7.47983 -6.39384 -4.14793 2.27364 3.13279 3.16343 3.23306 3.25249 3.28230 4.07322 4.20977 4.35281 4.47001 4.63611 4.93815 5.01303 5.23602 5.30818 5.37658 5.62719 5.65590 5.69421 5.71035 5.87854 5.90926 5.92212 5.96549 6.03646 6.08645 6.17772 6.26246 6.29904 6.38718 6.46990 6.58521 6.69528 6.88690 7.17787 7.40962 7.46605 7.55775 7.77383 7.94373 8.32355 8.83227 9.02229 9.37317 9.79994 10.63831 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.012380 B = 0.007412 C = 0.005316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.253255 B = 3776.851653 C = 5266.133098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.051 3.949 4 C 0.124 3.876 5 N -0.406 5.406 6 C -0.321 4.321 7 H 0.095 0.905 8 C 0.050 3.950 9 N -0.862 5.862 10 Si 0.910 3.090 11 H -0.262 1.262 12 H -0.278 1.278 13 H -0.278 1.278 14 C 0.535 3.465 15 O -0.614 6.614 16 C -0.001 4.001 17 C -0.168 4.168 18 C 0.028 3.972 19 C -0.061 4.061 20 C -0.170 4.170 21 C -0.172 4.172 22 N -0.297 5.297 23 N -0.279 5.279 24 C 0.103 3.897 25 H 0.030 0.970 26 H 0.031 0.969 27 H 0.078 0.922 28 H 0.040 0.960 29 H 0.043 0.957 30 H 0.111 0.889 31 H 0.071 0.929 32 H 0.271 0.729 33 H 0.185 0.815 34 H 0.110 0.890 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.285 -1.288 -4.950 5.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.027 4.027 4 C 0.001 3.999 5 N -0.122 5.122 6 C -0.450 4.450 7 H 0.113 0.887 8 C -0.157 4.157 9 N -0.498 5.498 10 Si 0.735 3.265 11 H -0.186 1.186 12 H -0.204 1.204 13 H -0.204 1.204 14 C 0.324 3.676 15 O -0.503 6.503 16 C -0.127 4.127 17 C -0.196 4.196 18 C -0.129 4.129 19 C -0.081 4.081 20 C -0.207 4.207 21 C -0.210 4.210 22 N -0.129 5.129 23 N -0.066 5.066 24 C -0.038 4.038 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.096 0.904 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.129 0.871 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.201 0.799 34 H 0.128 0.872 35 H 0.121 0.879 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.185 -0.169 -5.761 6.164 hybrid contribution -0.270 -0.952 0.936 1.362 sum -2.454 -1.121 -4.826 5.529 Atomic orbital electron populations 1.22643 0.83325 1.01789 0.98832 1.88123 1.17460 1.27707 1.95056 1.23038 0.96390 0.84395 0.98858 1.21445 0.89225 0.98921 0.90357 1.42893 1.55019 1.07070 1.07212 1.19518 1.32135 0.81849 1.11477 0.88725 1.25470 0.94094 0.99962 0.96157 1.69801 1.28165 1.36109 1.15759 0.86125 0.78269 0.83021 0.79048 1.18605 1.20389 1.20396 1.17194 0.81668 0.84979 0.83749 1.90606 1.58501 1.16062 1.85085 1.21526 1.08531 0.94461 0.88215 1.23098 1.02844 0.97409 0.96231 1.21032 1.05503 0.92936 0.93422 1.19883 0.94952 0.93502 0.99770 1.23020 1.03291 0.95118 0.99277 1.22958 0.92162 1.03026 1.02852 1.72842 1.16685 1.01519 1.21887 1.45385 1.43283 1.12021 1.05937 1.21997 1.02303 0.77496 1.02028 0.95130 0.95022 0.90364 0.94148 0.93866 0.87119 0.91086 0.91904 0.79864 0.87209 0.87900 0.88566 0.88912 0.88833 0.90682 0.90049 0.88270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.37 -7.57 10.40 -35.23 -0.37 -7.94 16 3 C 0.05 1.03 6.25 37.16 0.23 1.26 16 4 C 0.12 2.86 5.21 -4.04 -0.02 2.84 16 5 N -0.41 -10.06 2.42 -116.18 -0.28 -10.34 16 6 C -0.32 -7.93 5.96 -15.02 -0.09 -8.02 16 7 H 0.10 2.35 6.21 -52.49 -0.33 2.02 16 8 C 0.05 1.21 5.07 -17.45 -0.09 1.12 16 9 N -0.86 -22.00 11.54 55.50 0.64 -21.36 16 10 Si 0.91 19.02 29.57 -169.99 -5.03 13.99 16 11 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 12 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 13 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 14 C 0.54 13.30 7.56 -12.70 -0.10 13.20 16 15 O -0.61 -15.53 14.63 5.21 0.08 -15.45 16 16 C 0.00 -0.02 6.83 -82.06 -0.56 -0.58 16 17 C -0.17 -3.70 8.41 -38.95 -0.33 -4.03 16 18 C 0.03 0.56 6.85 -82.47 -0.57 0.00 16 19 C -0.06 -0.98 6.33 -91.77 -0.58 -1.56 16 20 C -0.17 -2.44 10.03 -26.69 -0.27 -2.71 16 21 C -0.17 -2.41 10.24 -26.69 -0.27 -2.69 16 22 N -0.30 -6.09 11.90 33.63 0.40 -5.69 16 23 N -0.28 -5.82 3.75 -63.89 -0.24 -6.06 16 24 C 0.10 1.72 10.55 59.85 0.63 2.35 16 25 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.04 0.90 8.08 -51.93 -0.42 0.48 16 30 H 0.11 2.72 5.90 -51.93 -0.31 2.41 16 31 H 0.07 1.64 7.66 -51.93 -0.40 1.24 16 32 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 33 H 0.18 4.12 4.63 -52.49 -0.24 3.88 16 34 H 0.11 1.57 8.14 -51.93 -0.42 1.15 16 35 H 0.10 1.65 7.22 -51.93 -0.37 1.27 16 36 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.10 1.72 6.88 -51.93 -0.36 1.36 16 LS Contribution 342.12 15.07 5.16 5.16 Total: -1.00 -29.56 342.12 -6.32 -35.88 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -5.79 Total: 9.02 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -0.89 Total: 2.79 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: 0.52 Total: -43.45 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.29 Total: -23.39 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.56 -6.32 -35.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822283485.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.178 kcal (2) G-P(sol) polarization free energy of solvation -29.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds