Wall clock time and date at job start Tue Mar 31 2020 03:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 113.99950 * 2 1 4 4 C 1.52998 * 109.47389 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47242 * 64.99333 * 4 3 2 6 6 C 1.36833 * 120.00499 * 265.20336 * 5 4 3 7 7 H 1.07994 * 120.00483 * 133.20251 * 6 5 4 8 8 C 1.39056 * 119.99668 * 313.21043 * 6 5 4 9 9 N 1.31358 * 120.00229 * 349.92396 * 8 6 5 10 10 Si 1.86802 * 119.99982 * 169.93210 * 8 6 5 11 11 H 1.48500 * 109.46929 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47301 * 119.99288 * 10 8 6 13 13 H 1.48504 * 109.46762 * 239.99567 * 10 8 6 14 14 C 1.34781 * 119.99577 * 85.20608 * 5 4 3 15 15 O 1.21677 * 119.99927 * 354.41008 * 14 5 4 16 16 C 1.47017 * 119.99776 * 174.14523 * 14 5 4 17 17 C 1.38518 * 126.89593 * 352.73423 * 16 14 5 18 18 C 1.39650 * 105.35119 * 179.97438 * 17 16 14 19 19 C 1.50694 * 126.05944 * 179.97438 * 18 17 16 20 20 C 1.52998 * 117.50442 * 343.74863 * 19 18 17 21 21 C 1.53002 * 117.50086 * 275.08438 * 19 18 17 22 22 N 1.30878 * 107.87639 * 0.02562 * 18 17 16 23 23 N 1.28437 * 110.95459 * 359.74983 * 22 18 17 24 24 C 1.46504 * 125.19910 * 180.26339 * 23 22 18 25 25 H 1.09002 * 109.47880 * 300.00389 * 1 2 3 26 26 H 1.09000 * 109.46882 * 60.00564 * 1 2 3 27 27 H 1.09004 * 109.47005 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47289 * 59.99248 * 3 2 1 29 29 H 1.09007 * 109.46831 * 299.99637 * 3 2 1 30 30 H 1.08998 * 109.46620 * 304.99438 * 4 3 2 31 31 H 1.09004 * 109.47151 * 185.00239 * 4 3 2 32 32 H 0.96998 * 120.00151 * 180.02562 * 9 8 6 33 33 H 1.07996 * 127.32514 * 359.97438 * 17 16 14 34 34 H 1.09005 * 115.54728 * 129.41561 * 19 18 17 35 35 H 1.09007 * 117.49279 * 359.97438 * 20 19 18 36 36 H 1.08991 * 117.50477 * 145.01922 * 20 19 18 37 37 H 1.09001 * 117.50025 * 214.98272 * 21 19 18 38 38 H 1.09003 * 117.49450 * 359.97438 * 21 19 18 39 39 H 1.08998 * 109.47222 * 263.85401 * 24 23 22 40 40 H 1.08997 * 109.46818 * 23.85947 * 24 23 22 41 41 H 1.08996 * 109.46973 * 143.85418 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 4.1924 -0.7862 -1.3060 7 1 3.7919 -1.3640 -2.1258 8 6 4.9271 -1.4143 -0.3064 9 7 5.5792 -0.6961 0.5793 10 14 4.9871 -3.2795 -0.2232 11 1 4.1742 -3.8506 -1.3270 12 1 6.3939 -3.7360 -0.3566 13 1 4.4405 -3.7346 1.0804 14 6 4.1702 1.3227 -2.3477 15 8 3.8820 2.5047 -2.3285 16 6 4.7352 0.7235 -3.5656 17 6 5.2453 -0.5569 -3.7029 18 6 5.6557 -0.6507 -5.0345 19 6 6.2838 -1.8554 -5.6864 20 6 6.8447 -2.9434 -4.7686 21 6 7.7972 -2.0281 -5.5421 22 7 5.3990 0.4937 -5.6154 23 7 4.8579 1.3163 -4.7908 24 6 4.4389 2.6826 -5.1134 25 1 -0.3635 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6884 1.8464 0.8899 29 1 1.6885 1.8463 -0.8901 30 1 3.8506 0.5687 0.8428 31 1 3.9784 2.1766 0.0903 32 1 6.0920 -1.1342 1.2764 33 1 5.3117 -1.3204 -2.9420 34 1 5.8281 -2.1736 -6.6241 35 1 6.7597 -2.7876 -3.6931 36 1 6.7584 -3.9773 -5.1025 37 1 8.3370 -2.4604 -6.3846 38 1 8.3385 -1.2701 -4.9759 39 1 5.2255 3.3809 -4.8278 40 1 4.2535 2.7623 -6.1845 41 1 3.5258 2.9209 -4.5679 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822283485.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:22 Heat of formation + Delta-G solvation = 21.470502 kcal Electronic energy + Delta-G solvation = -24610.834241 eV Core-core repulsion = 21107.757489 eV Total energy + Delta-G solvation = -3503.076752 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.33151 -40.35454 -38.52934 -38.00274 -36.73349 -33.82185 -33.50700 -32.31482 -30.27854 -28.10852 -27.31576 -26.79142 -24.59840 -24.03502 -23.22638 -22.50425 -21.29337 -20.42233 -19.13107 -17.85502 -17.36809 -17.03320 -16.98067 -16.87167 -16.53121 -16.07068 -15.96142 -15.55759 -15.17519 -14.89556 -14.64112 -14.48834 -13.67070 -13.60111 -13.44327 -13.23719 -12.99176 -12.84164 -12.75027 -12.58887 -12.46870 -12.25203 -12.00536 -11.93106 -11.79497 -11.45662 -11.09922 -10.90079 -10.61039 -10.46901 -9.85821 -9.58599 -9.36191 -8.26919 -6.07990 0.52201 1.47055 1.50982 1.60912 1.65719 1.67908 2.32204 2.49195 2.84344 3.00105 3.05077 3.16413 3.56849 3.98989 4.08525 4.13856 4.21005 4.25415 4.32764 4.41215 4.50476 4.52456 4.55796 4.59509 4.60328 4.71039 4.75235 4.83563 4.86425 4.88563 5.04755 5.24060 5.31415 5.32722 5.37865 5.48758 5.79131 5.95854 5.98658 6.39620 6.41314 7.09833 7.21596 7.48362 7.89958 8.76954 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.012380 B = 0.007412 C = 0.005316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.253255 B = 3776.851653 C = 5266.133098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.063 3.937 4 C 0.123 3.877 5 N -0.414 5.414 6 C -0.326 4.326 7 H 0.090 0.910 8 C 0.015 3.985 9 N -0.892 5.892 10 Si 0.967 3.033 11 H -0.253 1.253 12 H -0.271 1.271 13 H -0.280 1.280 14 C 0.523 3.477 15 O -0.629 6.629 16 C -0.031 4.031 17 C -0.176 4.176 18 C 0.029 3.971 19 C -0.080 4.080 20 C -0.165 4.165 21 C -0.158 4.158 22 N -0.296 5.296 23 N -0.280 5.280 24 C 0.098 3.902 25 H 0.053 0.947 26 H 0.036 0.964 27 H 0.094 0.906 28 H 0.071 0.929 29 H 0.032 0.968 30 H 0.095 0.905 31 H 0.061 0.939 32 H 0.273 0.727 33 H 0.176 0.824 34 H 0.132 0.868 35 H 0.080 0.920 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.115 0.885 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.385 -2.793 -6.164 7.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.317 6.317 3 C -0.015 4.015 4 C 0.000 4.000 5 N -0.130 5.130 6 C -0.454 4.454 7 H 0.107 0.893 8 C -0.188 4.188 9 N -0.529 5.529 10 Si 0.791 3.209 11 H -0.177 1.177 12 H -0.197 1.197 13 H -0.206 1.206 14 C 0.312 3.688 15 O -0.519 6.519 16 C -0.158 4.158 17 C -0.205 4.205 18 C -0.128 4.128 19 C -0.100 4.100 20 C -0.203 4.203 21 C -0.196 4.196 22 N -0.129 5.129 23 N -0.068 5.068 24 C -0.042 4.042 25 H 0.072 0.928 26 H 0.055 0.945 27 H 0.113 0.887 28 H 0.089 0.911 29 H 0.050 0.950 30 H 0.113 0.887 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.193 0.807 34 H 0.149 0.851 35 H 0.099 0.901 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.133 0.867 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.300 -1.661 -6.981 7.536 hybrid contribution -0.260 -0.437 1.302 1.398 sum -2.559 -2.098 -5.679 6.573 Atomic orbital electron populations 1.22882 0.80606 1.03384 1.00189 1.88055 1.20480 1.27795 1.95322 1.22821 0.94257 0.84681 0.99694 1.21415 0.91510 0.97800 0.89317 1.43093 1.55024 1.07310 1.07590 1.19558 1.32387 0.81864 1.11597 0.89269 1.26149 0.93429 1.03759 0.95513 1.69898 1.28885 1.37733 1.16361 0.85249 0.78566 0.78195 0.78937 1.17675 1.19655 1.20589 1.17515 0.81739 0.85025 0.84476 1.90566 1.59256 1.16526 1.85548 1.21498 1.10038 0.95518 0.88764 1.23078 1.03185 0.96930 0.97282 1.21602 1.04649 0.93924 0.92608 1.20099 0.96382 0.92627 1.00882 1.23100 1.02748 0.96469 0.97936 1.23031 0.90931 1.02222 1.03426 1.72853 1.16565 1.01722 1.21713 1.45717 1.42902 1.13082 1.05135 1.22218 1.02021 0.75880 1.04048 0.92815 0.94518 0.88740 0.91138 0.94956 0.88744 0.92027 0.91739 0.80744 0.85067 0.90107 0.85430 0.85559 0.90591 0.89973 0.86679 0.89246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 11.01 113.37 1.25 2.01 16 2 O -0.40 -16.34 10.40 -148.98 -1.55 -17.89 16 3 C 0.06 2.55 6.25 71.98 0.45 3.00 16 4 C 0.12 5.84 5.21 86.38 0.45 6.29 16 5 N -0.41 -21.15 2.42 -639.71 -1.55 -22.70 16 6 C -0.33 -16.42 5.96 84.11 0.50 -15.92 16 7 H 0.09 4.53 6.21 -2.91 -0.02 4.51 16 8 C 0.02 0.75 5.07 84.96 0.43 1.18 16 9 N -0.89 -46.41 11.54 21.68 0.25 -46.16 16 10 Si 0.97 38.90 29.57 68.60 2.03 40.93 16 11 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 12 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 13 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 14 C 0.52 26.79 7.56 86.54 0.65 27.45 16 15 O -0.63 -32.77 14.63 -4.28 -0.06 -32.83 16 16 C -0.03 -1.48 6.83 40.76 0.28 -1.20 16 17 C -0.18 -7.88 8.41 22.68 0.19 -7.69 16 18 C 0.03 1.14 6.85 43.04 0.29 1.43 16 19 C -0.08 -2.39 6.33 -11.54 -0.07 -2.46 16 20 C -0.17 -4.36 10.03 30.62 0.31 -4.05 16 21 C -0.16 -4.02 10.24 30.62 0.31 -3.71 16 22 N -0.30 -11.89 11.90 -47.50 -0.57 -12.45 16 23 N -0.28 -11.69 3.75 -356.03 -1.34 -13.02 16 24 C 0.10 3.23 10.55 127.77 1.35 4.58 16 25 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.09 2.45 8.14 -2.38 -0.02 2.43 16 28 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 29 H 0.03 1.36 8.08 -2.38 -0.02 1.34 16 30 H 0.09 4.79 5.90 -2.39 -0.01 4.78 16 31 H 0.06 2.96 7.66 -2.38 -0.02 2.94 16 32 H 0.27 13.38 8.31 -92.71 -0.77 12.61 16 33 H 0.18 8.03 4.63 -2.91 -0.01 8.02 16 34 H 0.13 3.33 8.14 -2.38 -0.02 3.31 16 35 H 0.08 2.51 7.22 -2.38 -0.02 2.49 16 36 H 0.13 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.13 2.37 8.14 -2.39 -0.02 2.36 16 38 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 40 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 41 H 0.09 3.13 6.88 -2.39 -0.02 3.11 16 Total: -1.00 -64.54 342.12 4.65 -59.89 By element: Atomic # 1 Polarization: 32.30 SS G_CDS: 1.04 Total: 33.34 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: 6.39 Total: 10.90 kcal Atomic # 7 Polarization: -91.14 SS G_CDS: -3.20 Total: -94.34 kcal Atomic # 8 Polarization: -49.11 SS G_CDS: -1.61 Total: -50.72 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 2.03 Total: 40.93 kcal Total: -64.54 4.65 -59.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822283485.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.361 kcal (2) G-P(sol) polarization free energy of solvation -64.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds