Wall clock time and date at job start Tue Mar 31 2020 03:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00155 * 2 1 4 4 H 1.48499 * 109.46890 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46825 * 300.00313 * 3 2 1 6 6 H 1.48499 * 109.47155 * 59.99816 * 3 2 1 7 7 C 1.37872 * 119.99540 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99646 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00262 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.47206 * 180.02562 * 9 7 2 11 11 C 1.34768 * 120.00224 * 179.97438 * 10 9 7 12 12 O 1.21286 * 120.00219 * 0.02562 * 11 10 9 13 13 C 1.50701 * 120.00133 * 179.97438 * 11 10 9 14 14 N 1.46909 * 109.46842 * 180.02562 * 13 11 10 15 15 C 1.46846 * 111.00243 * 66.04838 * 14 13 11 16 16 C 1.53036 * 109.52162 * 174.15828 * 15 14 13 17 17 C 1.53118 * 109.28007 * 59.18140 * 16 15 14 18 18 C 1.53123 * 109.15585 * 302.34276 * 17 16 15 19 19 H 1.08997 * 109.50390 * 297.67422 * 18 17 16 20 20 N 1.46502 * 109.49856 * 177.59860 * 18 17 16 21 21 C 1.35314 * 125.86862 * 324.99686 * 20 18 17 22 22 C 1.35347 * 106.17538 * 180.02562 * 21 20 18 23 23 N 1.33770 * 106.49728 * 359.97438 * 22 21 20 24 24 N 1.28635 * 108.88481 * 359.74421 * 23 22 21 25 25 C 1.46846 * 111.00162 * 301.83310 * 14 13 11 26 26 H 0.97011 * 119.99946 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47160 * 60.00004 * 9 7 2 28 28 H 1.08998 * 109.46962 * 300.00059 * 9 7 2 29 29 H 0.97004 * 119.99761 * 359.97438 * 10 9 7 30 30 H 1.09000 * 109.46932 * 60.00534 * 13 11 10 31 31 H 1.08998 * 109.47176 * 299.99955 * 13 11 10 32 32 H 1.08998 * 109.45759 * 294.17597 * 15 14 13 33 33 H 1.09004 * 109.46280 * 54.13953 * 15 14 13 34 34 H 1.09008 * 109.49869 * 179.11730 * 16 15 14 35 35 H 1.09002 * 109.50237 * 299.19577 * 16 15 14 36 36 H 1.08993 * 109.52399 * 62.24659 * 17 16 15 37 37 H 1.08997 * 109.52156 * 182.37709 * 17 16 15 38 38 H 1.07994 * 126.91485 * 0.02562 * 21 20 18 39 39 H 1.08002 * 126.75678 * 179.97438 * 22 21 20 40 40 H 1.08999 * 109.46373 * 305.86398 * 25 14 13 41 41 H 1.08998 * 109.45881 * 65.82485 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3965 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7536 -4.8833 0.0000 12 8 0.5612 -5.1050 0.0000 13 6 2.7329 -6.0288 -0.0006 14 7 1.9982 -7.3010 -0.0005 15 6 1.2526 -7.4783 -1.2530 16 6 0.6202 -8.8716 -1.2789 17 6 -0.3184 -9.0232 -0.0786 18 6 0.4727 -8.7861 1.2109 19 1 1.2532 -9.5414 1.3030 20 7 -0.4301 -8.8728 2.3614 21 6 -1.7214 -8.4691 2.3881 22 6 -2.1726 -8.7314 3.6369 23 7 -1.1491 -9.2761 4.3040 24 7 -0.1331 -9.3514 3.5187 25 6 1.1094 -7.3953 1.1646 26 1 -0.4850 0.8401 0.0004 27 1 0.6239 -2.5567 -0.8903 28 1 0.6246 -2.5570 0.8897 29 1 3.1566 -3.4355 -0.0009 30 1 3.3601 -5.9710 0.8890 31 1 3.3589 -5.9712 -0.8910 32 1 0.4697 -6.7228 -1.3196 33 1 1.9323 -7.3722 -2.0985 34 1 0.0538 -8.9971 -2.2018 35 1 1.4035 -9.6278 -1.2270 36 1 -1.1238 -8.2925 -0.1514 37 1 -0.7386 -10.0289 -0.0696 38 1 -2.2795 -8.0266 1.5764 39 1 -3.1641 -8.5388 4.0195 40 1 1.6851 -7.2289 2.0751 41 1 0.3272 -6.6402 1.0867 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823474679.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:29 Heat of formation + Delta-G solvation = 42.330530 kcal Electronic energy + Delta-G solvation = -23710.873344 eV Core-core repulsion = 20240.993902 eV Total energy + Delta-G solvation = -3469.879442 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.27866 -41.37359 -39.27226 -36.33016 -35.70688 -34.40627 -33.74624 -32.01286 -31.00867 -30.03990 -28.02714 -25.32229 -25.05011 -24.05111 -23.48765 -22.48649 -21.46845 -20.81512 -19.02211 -18.73179 -17.68063 -17.37774 -17.19510 -16.61639 -16.40690 -16.10738 -15.90566 -15.81154 -15.37656 -15.07819 -14.57904 -14.54416 -14.17024 -13.96845 -13.79408 -13.50263 -12.97894 -12.91159 -12.81716 -12.77733 -12.39435 -12.26007 -12.12634 -11.84220 -11.78310 -11.67141 -11.48700 -11.36169 -11.03588 -10.83705 -10.37933 -9.83282 -9.27840 -8.32793 -6.49307 0.59883 1.32308 1.41286 1.41702 1.55192 1.58000 1.68068 2.29873 2.58259 2.81023 3.02523 3.28580 3.55454 3.61499 3.82865 3.94977 4.01582 4.13709 4.19630 4.26447 4.30936 4.36203 4.51640 4.53251 4.68731 4.80364 4.83642 4.91316 4.98558 5.04953 5.07452 5.20190 5.22259 5.33231 5.46824 5.57465 5.66723 5.75387 5.82805 5.90018 6.62477 6.85910 7.20589 7.44796 7.47746 8.79125 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.019373 B = 0.003470 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.986287 B = 8066.800857 C = 8891.389175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.982 3.018 4 H -0.253 1.253 5 H -0.278 1.278 6 H -0.281 1.281 7 C -0.556 4.556 8 H 0.083 0.917 9 C 0.268 3.732 10 N -0.706 5.706 11 C 0.461 3.539 12 O -0.590 6.590 13 C 0.043 3.957 14 N -0.496 5.496 15 C 0.030 3.970 16 C -0.099 4.099 17 C -0.124 4.124 18 C 0.153 3.847 19 H 0.127 0.873 20 N -0.280 5.280 21 C -0.041 4.041 22 C -0.061 4.061 23 N -0.309 5.309 24 N -0.120 5.120 25 C 0.031 3.969 26 H 0.268 0.732 27 H -0.012 1.012 28 H -0.018 1.018 29 H 0.408 0.592 30 H 0.125 0.875 31 H 0.139 0.861 32 H 0.034 0.966 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.212 0.788 39 H 0.218 0.782 40 H 0.065 0.935 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.206 -18.116 -3.414 18.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.805 3.195 4 H -0.176 1.176 5 H -0.204 1.204 6 H -0.206 1.206 7 C -0.594 4.594 8 H 0.101 0.899 9 C 0.145 3.855 10 N -0.356 5.356 11 C 0.248 3.752 12 O -0.473 6.473 13 C -0.088 4.088 14 N -0.218 5.218 15 C -0.098 4.098 16 C -0.137 4.137 17 C -0.162 4.162 18 C 0.051 3.949 19 H 0.144 0.856 20 N -0.074 5.074 21 C -0.192 4.192 22 C -0.219 4.219 23 N -0.174 5.174 24 N -0.098 5.098 25 C -0.098 4.098 26 H 0.077 0.923 27 H 0.006 0.994 28 H 0.000 1.000 29 H 0.244 0.756 30 H 0.142 0.858 31 H 0.157 0.843 32 H 0.053 0.947 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.088 0.912 37 H 0.111 0.889 38 H 0.228 0.772 39 H 0.234 0.766 40 H 0.083 0.917 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.711 -19.200 -2.507 19.715 hybrid contribution -1.191 2.575 -0.484 2.878 sum 2.519 -16.625 -2.991 17.079 Atomic orbital electron populations 1.70136 1.08241 1.28471 1.50087 1.26038 0.95746 1.03863 0.93864 0.85149 0.79173 0.77486 0.77669 1.17604 1.20383 1.20635 1.21666 0.94313 0.90709 1.52700 0.89872 1.18477 0.88697 0.84533 0.93798 1.46376 1.11215 1.05912 1.72135 1.22859 0.90811 0.85765 0.75771 1.90541 1.19279 1.84857 1.52611 1.22479 0.95019 0.83623 1.07720 1.62415 1.27454 1.29502 1.02420 1.22471 0.97795 0.98052 0.91445 1.21497 0.98739 0.96152 0.97342 1.21988 0.98678 1.03683 0.91871 1.21800 0.91739 0.99557 0.81761 0.85553 1.47768 1.10389 1.38222 1.11004 1.24140 0.86412 1.06155 1.02532 1.24178 1.01680 1.04209 0.91805 1.75028 0.98260 1.18300 1.25842 1.78222 1.22011 1.19290 0.90316 1.22538 0.97365 0.95519 0.94373 0.92287 0.99407 0.99973 0.75582 0.85763 0.84281 0.94721 0.88789 0.88492 0.89087 0.91231 0.88868 0.77174 0.76573 0.91692 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.24 13.29 21.45 0.28 -54.95 16 2 C 0.00 0.25 5.46 84.65 0.46 0.71 16 3 Si 0.98 41.58 29.54 68.60 2.03 43.61 16 4 H -0.25 -9.85 7.11 99.48 0.71 -9.15 16 5 H -0.28 -11.56 7.11 99.48 0.71 -10.86 16 6 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.56 -29.47 9.28 25.60 0.24 -29.23 16 8 H 0.08 3.98 7.60 -2.91 -0.02 3.96 16 9 C 0.27 14.16 5.43 85.63 0.46 14.63 16 10 N -0.71 -27.58 5.55 -466.79 -2.59 -30.17 16 11 C 0.46 16.20 7.25 87.66 0.64 16.83 16 12 O -0.59 -25.29 11.62 -3.05 -0.04 -25.33 16 13 C 0.04 0.97 5.86 85.56 0.50 1.47 16 14 N -0.50 -10.92 4.86 -900.93 -4.38 -15.30 16 15 C 0.03 0.61 5.10 86.33 0.44 1.05 16 16 C -0.10 -1.41 6.09 30.65 0.19 -1.22 16 17 C -0.12 -2.00 4.97 30.67 0.15 -1.85 16 18 C 0.15 3.22 3.29 45.04 0.15 3.36 16 19 H 0.13 2.43 8.14 -2.39 -0.02 2.41 16 20 N -0.28 -7.11 3.26 -326.93 -1.06 -8.17 16 21 C -0.04 -0.93 10.68 83.49 0.89 -0.03 16 22 C -0.06 -1.47 12.05 83.73 1.01 -0.46 16 23 N -0.31 -9.59 12.41 -58.26 -0.72 -10.32 16 24 N -0.12 -3.69 13.16 37.02 0.49 -3.20 16 25 C 0.03 0.82 4.58 86.32 0.40 1.21 16 26 H 0.27 14.86 8.31 -92.70 -0.77 14.09 16 27 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 28 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 29 H 0.41 13.01 8.32 -92.71 -0.77 12.24 16 30 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.14 2.29 8.06 -2.39 -0.02 2.27 16 32 H 0.03 0.99 6.00 -2.39 -0.01 0.97 16 33 H 0.09 1.62 8.06 -2.39 -0.02 1.60 16 34 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 35 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.07 1.27 7.06 -2.39 -0.02 1.25 16 37 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.21 3.58 7.25 -2.91 -0.02 3.56 16 39 H 0.22 3.54 8.06 -2.91 -0.02 3.51 16 40 H 0.06 1.82 8.12 -2.39 -0.02 1.80 16 41 H 0.06 1.98 5.36 -2.39 -0.01 1.97 16 Total: -1.00 -74.81 334.23 -0.19 -75.00 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: 0.27 Total: 22.35 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: 5.52 Total: 6.47 kcal Atomic # 7 Polarization: -114.13 SS G_CDS: -7.98 Total: -122.11 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.04 Total: -25.33 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Total: -74.81 -0.19 -75.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823474679.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.335 kcal (2) G-P(sol) polarization free energy of solvation -74.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds