Wall clock time and date at job start Tue Mar 31 2020 03:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00232 * 2 1 4 4 H 1.48500 * 109.47280 * 270.00227 * 3 2 1 5 5 H 1.48504 * 109.46876 * 30.00501 * 3 2 1 6 6 H 1.48502 * 109.46730 * 150.00000 * 3 2 1 7 7 C 1.37879 * 119.99801 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99759 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99922 * 179.97438 * 7 2 1 10 10 N 1.46506 * 109.47148 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99969 * 179.72251 * 10 9 7 12 12 O 1.21281 * 120.00220 * 0.02562 * 11 10 9 13 13 C 1.50706 * 120.00080 * 180.02562 * 11 10 9 14 14 N 1.46889 * 109.47109 * 180.02562 * 13 11 10 15 15 C 1.46959 * 111.00102 * 293.79785 * 14 13 11 16 16 C 1.53049 * 109.36362 * 176.81680 * 15 14 13 17 17 N 1.46955 * 109.36833 * 58.40206 * 16 15 14 18 18 C 1.38496 * 110.99807 * 176.80956 * 17 16 15 19 19 N 1.31201 * 125.78752 * 123.82418 * 18 17 16 20 20 C 1.34388 * 109.30098 * 179.97438 * 19 18 17 21 21 C 1.34377 * 108.32284 * 0.02562 * 20 19 18 22 22 N 1.36025 * 125.79243 * 303.50947 * 18 17 16 23 23 H 0.96996 * 126.49616 * 0.02562 * 22 18 17 24 24 C 1.46955 * 110.87907 * 300.67589 * 17 16 15 25 25 C 1.46965 * 110.99870 * 170.00198 * 14 13 11 26 26 H 0.97005 * 119.99977 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47545 * 60.00113 * 9 7 2 28 28 H 1.08998 * 109.47669 * 300.00056 * 9 7 2 29 29 H 0.97005 * 119.99811 * 0.02562 * 10 9 7 30 30 H 1.09004 * 109.46762 * 300.00389 * 13 11 10 31 31 H 1.08998 * 109.46924 * 59.99727 * 13 11 10 32 32 H 1.09007 * 109.48694 * 296.78149 * 15 14 13 33 33 H 1.09001 * 109.48949 * 56.84570 * 15 14 13 34 34 H 1.09002 * 109.48821 * 298.42916 * 16 15 14 35 35 H 1.09009 * 109.50251 * 178.38247 * 16 15 14 36 36 H 1.08009 * 125.83855 * 179.97438 * 20 19 18 37 37 H 1.08001 * 126.52776 * 180.02562 * 21 20 19 38 38 H 1.08990 * 109.49170 * 299.35491 * 24 17 16 39 39 H 1.08995 * 109.50433 * 179.29789 * 24 17 16 40 40 H 1.08995 * 109.48409 * 303.15092 * 25 14 13 41 41 H 1.08997 * 109.48809 * 63.21611 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1941 -0.0011 10 7 3.9998 -2.5754 -0.0010 11 6 5.3248 -2.8217 -0.0071 12 8 6.1129 -1.8999 -0.0122 13 6 5.8271 -4.2426 -0.0076 14 7 7.2960 -4.2426 -0.0141 15 6 7.8171 -3.6905 -1.2725 16 6 9.3452 -3.6344 -1.2077 17 7 9.8729 -4.9852 -0.9701 18 6 11.2578 -4.9852 -0.9764 19 7 12.0294 -5.4139 -0.0057 20 6 13.3165 -5.2608 -0.3608 21 6 13.3540 -4.7196 -1.5902 22 7 12.0488 -4.5463 -1.9923 23 1 11.7499 -4.1785 -2.8385 24 6 9.3519 -5.5372 0.2882 25 6 7.8237 -5.5935 0.2234 26 1 -0.4850 0.8401 0.0004 27 1 3.8752 -0.6805 0.8888 28 1 3.8745 -0.6801 -0.8911 29 1 3.3694 -3.3127 -0.0010 30 1 5.4680 -4.7551 0.8849 31 1 5.4594 -4.7576 -0.8950 32 1 7.5114 -4.3270 -2.1029 33 1 7.4221 -2.6853 -1.4197 34 1 9.6507 -2.9763 -0.3942 35 1 9.7356 -3.2521 -2.1509 36 1 14.1741 -5.5264 0.2397 37 1 14.2395 -4.4727 -2.1571 38 1 9.6575 -4.9009 1.1186 39 1 9.7468 -6.5423 0.4358 40 1 7.4336 -5.9755 1.1668 41 1 7.5181 -6.2515 -0.5900 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846876952.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:37 Heat of formation + Delta-G solvation = 52.712984 kcal Electronic energy + Delta-G solvation = -23090.098557 eV Core-core repulsion = 19620.669333 eV Total energy + Delta-G solvation = -3469.429225 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.21285 -39.76472 -38.44360 -35.40668 -34.23969 -32.80760 -32.38666 -31.03750 -30.11282 -28.48833 -27.15498 -24.64360 -23.98872 -21.96538 -21.60570 -21.10846 -19.89139 -19.85574 -18.80909 -17.29678 -16.32504 -16.07428 -15.75593 -15.48465 -15.30051 -15.15878 -14.63713 -14.50184 -14.20946 -13.92686 -13.89968 -13.75637 -13.40020 -12.84860 -12.57574 -12.39730 -12.08897 -11.76084 -11.45360 -11.27169 -11.15503 -10.99876 -10.76498 -10.32679 -10.24776 -9.98939 -9.89071 -9.51847 -9.19882 -8.79801 -8.37505 -8.14556 -8.06701 -6.23501 -4.25848 1.77123 2.50633 2.86894 3.19834 3.25281 3.31604 3.40329 3.50885 3.67117 4.16547 4.31577 4.45825 4.68186 4.87599 4.96661 5.01931 5.08651 5.11731 5.18933 5.22552 5.32412 5.36809 5.40797 5.48982 5.59550 5.70141 5.72728 5.86758 5.92725 6.19632 6.31237 6.64817 6.73809 6.87649 6.96755 7.05277 7.21347 7.32843 7.37389 7.85534 8.12102 8.49610 8.73496 8.92535 9.36645 10.88415 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.036354 B = 0.002714 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.020814 B =10314.034690 C =10815.669200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.544 4.544 8 H 0.079 0.921 9 C 0.222 3.778 10 N -0.707 5.707 11 C 0.501 3.499 12 O -0.543 6.543 13 C 0.037 3.963 14 N -0.522 5.522 15 C 0.054 3.946 16 C 0.063 3.937 17 N -0.462 5.462 18 C 0.398 3.602 19 N -0.517 5.517 20 C -0.014 4.014 21 C -0.064 4.064 22 N -0.577 5.577 23 H 0.419 0.581 24 C 0.081 3.919 25 C 0.054 3.946 26 H 0.268 0.732 27 H 0.025 0.975 28 H 0.019 0.981 29 H 0.396 0.604 30 H 0.103 0.897 31 H 0.062 0.938 32 H 0.039 0.961 33 H 0.110 0.890 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.170 0.830 37 H 0.177 0.823 38 H 0.063 0.937 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.397 -12.381 -4.225 25.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.127 4.127 3 Si 0.704 3.296 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.582 4.582 8 H 0.097 0.903 9 C 0.100 3.900 10 N -0.356 5.356 11 C 0.285 3.715 12 O -0.421 6.421 13 C -0.095 4.095 14 N -0.247 5.247 15 C -0.074 4.074 16 C -0.064 4.064 17 N -0.185 5.185 18 C 0.044 3.956 19 N -0.242 5.242 20 C -0.161 4.161 21 C -0.196 4.196 22 N -0.185 5.185 23 H 0.257 0.743 24 C -0.046 4.046 25 C -0.075 4.075 26 H 0.077 0.923 27 H 0.043 0.957 28 H 0.037 0.963 29 H 0.229 0.771 30 H 0.121 0.879 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.128 0.872 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.187 0.813 37 H 0.194 0.806 38 H 0.081 0.919 39 H 0.111 0.889 40 H 0.108 0.892 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 22.507 -11.910 -3.439 25.695 hybrid contribution 0.134 0.930 -1.377 1.667 sum 22.641 -10.981 -4.816 25.620 Atomic orbital electron populations 1.69881 1.06219 1.27438 1.49407 1.24805 0.94795 0.99196 0.93875 0.86811 0.80610 0.83233 0.78995 1.19905 1.20902 1.18472 1.21096 0.88552 0.95210 1.53324 0.90254 1.19468 0.95182 0.78631 0.96716 1.46180 1.05649 1.11059 1.72733 1.20352 0.83071 0.90592 0.77471 1.90612 1.55269 1.46077 1.50172 1.21985 0.88407 0.95932 1.03130 1.61790 1.06350 1.21337 1.35173 1.22352 0.92620 1.02704 0.89741 1.22313 0.95802 0.86705 1.01617 1.59009 0.99702 1.22999 1.36826 1.21201 0.89250 0.99811 0.85327 1.70692 1.02273 1.25697 1.25580 1.22192 0.94458 1.04218 0.95270 1.22622 0.86217 1.11091 0.99672 1.43241 1.06485 1.51692 1.17079 0.74338 1.22039 0.93408 1.01185 0.87944 1.22299 0.93923 0.89406 1.01836 0.92253 0.95696 0.96277 0.77054 0.87851 0.91974 0.94256 0.87228 0.92102 0.90527 0.81292 0.80554 0.91864 0.88928 0.89232 0.93754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.29 13.96 55.43 0.77 -25.51 16 2 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 3 Si 0.88 21.26 27.47 -169.99 -4.67 16.60 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 7 C -0.54 -14.71 9.83 -34.44 -0.34 -15.04 16 8 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 9 C 0.22 5.35 4.50 -5.19 -0.02 5.33 16 10 N -0.71 -13.74 5.55 -61.47 -0.34 -14.08 16 11 C 0.50 9.04 7.53 -10.98 -0.08 8.96 16 12 O -0.54 -11.74 14.34 5.56 0.08 -11.66 16 13 C 0.04 0.47 5.45 -4.98 -0.03 0.45 16 14 N -0.52 -6.80 4.45 -235.90 -1.05 -7.85 16 15 C 0.05 0.69 5.26 -3.77 -0.02 0.67 16 16 C 0.06 0.71 5.53 -3.77 -0.02 0.69 16 17 N -0.46 -5.21 4.77 -174.52 -0.83 -6.05 16 18 C 0.40 4.62 7.36 -319.61 -2.35 2.27 16 19 N -0.52 -6.58 10.28 -13.92 -0.14 -6.73 16 20 C -0.01 -0.14 11.84 -17.80 -0.21 -0.35 16 21 C -0.06 -0.50 12.04 -16.29 -0.20 -0.70 16 22 N -0.58 -5.04 6.04 -13.15 -0.08 -5.12 16 23 H 0.42 2.58 8.71 -40.82 -0.36 2.22 16 24 C 0.08 0.90 4.96 -3.77 -0.02 0.89 16 25 C 0.05 0.56 5.61 -3.76 -0.02 0.53 16 26 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 28 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 29 H 0.40 6.71 8.32 -40.82 -0.34 6.37 16 30 H 0.10 1.13 8.03 -51.93 -0.42 0.72 16 31 H 0.06 0.70 8.12 -51.93 -0.42 0.27 16 32 H 0.04 0.46 8.14 -51.92 -0.42 0.04 16 33 H 0.11 1.68 5.85 -51.93 -0.30 1.38 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.08 0.71 7.73 -51.92 -0.40 0.31 16 36 H 0.17 1.24 8.06 -52.48 -0.42 0.82 16 37 H 0.18 0.76 8.06 -52.49 -0.42 0.33 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.09 0.99 8.00 -51.93 -0.42 0.58 16 40 H 0.09 0.80 8.07 -51.93 -0.42 0.38 16 41 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 335.41 15.07 5.05 5.05 Total: -1.00 -34.01 335.41 -10.57 -44.58 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -5.96 Total: 5.01 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: -3.41 Total: 5.75 kcal Atomic # 7 Polarization: -63.67 SS G_CDS: -1.67 Total: -65.34 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.08 Total: -11.66 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.60 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.01 -10.57 -44.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846876952.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.294 kcal (2) G-P(sol) polarization free energy of solvation -34.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds