Wall clock time and date at job start Tue Mar 31 2020 03:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00232 * 2 1 4 4 H 1.48500 * 109.47280 * 270.00227 * 3 2 1 5 5 H 1.48504 * 109.46876 * 30.00501 * 3 2 1 6 6 H 1.48502 * 109.46730 * 150.00000 * 3 2 1 7 7 C 1.37879 * 119.99801 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99759 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99922 * 179.97438 * 7 2 1 10 10 N 1.46506 * 109.47148 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99969 * 179.72251 * 10 9 7 12 12 O 1.21281 * 120.00220 * 0.02562 * 11 10 9 13 13 C 1.50706 * 120.00080 * 180.02562 * 11 10 9 14 14 N 1.46889 * 109.47109 * 180.02562 * 13 11 10 15 15 C 1.46959 * 111.00102 * 293.79785 * 14 13 11 16 16 C 1.53049 * 109.36362 * 176.81680 * 15 14 13 17 17 N 1.46955 * 109.36833 * 58.40206 * 16 15 14 18 18 C 1.38496 * 110.99807 * 176.80956 * 17 16 15 19 19 N 1.31201 * 125.78752 * 123.82418 * 18 17 16 20 20 C 1.34388 * 109.30098 * 179.97438 * 19 18 17 21 21 C 1.34377 * 108.32284 * 0.02562 * 20 19 18 22 22 N 1.36025 * 125.79243 * 303.50947 * 18 17 16 23 23 H 0.96996 * 126.49616 * 0.02562 * 22 18 17 24 24 C 1.46955 * 110.87907 * 300.67589 * 17 16 15 25 25 C 1.46965 * 110.99870 * 170.00198 * 14 13 11 26 26 H 0.97005 * 119.99977 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47545 * 60.00113 * 9 7 2 28 28 H 1.08998 * 109.47669 * 300.00056 * 9 7 2 29 29 H 0.97005 * 119.99811 * 0.02562 * 10 9 7 30 30 H 1.09004 * 109.46762 * 300.00389 * 13 11 10 31 31 H 1.08998 * 109.46924 * 59.99727 * 13 11 10 32 32 H 1.09007 * 109.48694 * 296.78149 * 15 14 13 33 33 H 1.09001 * 109.48949 * 56.84570 * 15 14 13 34 34 H 1.09002 * 109.48821 * 298.42916 * 16 15 14 35 35 H 1.09009 * 109.50251 * 178.38247 * 16 15 14 36 36 H 1.08009 * 125.83855 * 179.97438 * 20 19 18 37 37 H 1.08001 * 126.52776 * 180.02562 * 21 20 19 38 38 H 1.08990 * 109.49170 * 299.35491 * 24 17 16 39 39 H 1.08995 * 109.50433 * 179.29789 * 24 17 16 40 40 H 1.08995 * 109.48409 * 303.15092 * 25 14 13 41 41 H 1.08997 * 109.48809 * 63.21611 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1941 -0.0011 10 7 3.9998 -2.5754 -0.0010 11 6 5.3248 -2.8217 -0.0071 12 8 6.1129 -1.8999 -0.0122 13 6 5.8271 -4.2426 -0.0076 14 7 7.2960 -4.2426 -0.0141 15 6 7.8171 -3.6905 -1.2725 16 6 9.3452 -3.6344 -1.2077 17 7 9.8729 -4.9852 -0.9701 18 6 11.2578 -4.9852 -0.9764 19 7 12.0294 -5.4139 -0.0057 20 6 13.3165 -5.2608 -0.3608 21 6 13.3540 -4.7196 -1.5902 22 7 12.0488 -4.5463 -1.9923 23 1 11.7499 -4.1785 -2.8385 24 6 9.3519 -5.5372 0.2882 25 6 7.8237 -5.5935 0.2234 26 1 -0.4850 0.8401 0.0004 27 1 3.8752 -0.6805 0.8888 28 1 3.8745 -0.6801 -0.8911 29 1 3.3694 -3.3127 -0.0010 30 1 5.4680 -4.7551 0.8849 31 1 5.4594 -4.7576 -0.8950 32 1 7.5114 -4.3270 -2.1029 33 1 7.4221 -2.6853 -1.4197 34 1 9.6507 -2.9763 -0.3942 35 1 9.7356 -3.2521 -2.1509 36 1 14.1741 -5.5264 0.2397 37 1 14.2395 -4.4727 -2.1571 38 1 9.6575 -4.9009 1.1186 39 1 9.7468 -6.5423 0.4358 40 1 7.4336 -5.9755 1.1668 41 1 7.5181 -6.2515 -0.5900 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846876952.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:36 Heat of formation + Delta-G solvation = 26.332817 kcal Electronic energy + Delta-G solvation = -23091.242487 eV Core-core repulsion = 19620.669333 eV Total energy + Delta-G solvation = -3470.573155 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.95406 -40.94773 -39.64486 -36.49396 -35.91582 -34.39004 -33.57263 -31.91998 -31.23807 -29.91386 -28.32986 -25.80114 -24.86581 -23.77744 -22.35021 -21.96669 -21.42281 -20.70545 -19.57832 -19.11540 -17.69661 -17.38964 -16.79676 -16.66325 -16.36559 -16.17141 -15.97037 -15.74066 -15.39926 -15.20673 -14.77057 -14.63596 -14.46861 -14.38928 -14.18092 -13.90906 -13.17714 -13.01154 -12.89220 -12.67309 -12.35726 -12.20063 -12.06737 -11.93027 -11.64384 -11.11767 -11.02455 -10.91245 -10.77819 -10.60635 -9.88180 -9.31286 -8.83429 -8.39530 -6.46111 1.04813 1.32379 1.35172 1.47562 1.78033 1.79953 2.12170 2.27367 2.30569 2.92405 2.95939 2.99885 3.63611 3.85799 3.91510 4.07251 4.15361 4.22403 4.33215 4.37261 4.44714 4.48022 4.52313 4.66800 4.77118 4.80631 4.84160 4.87928 4.93713 5.05219 5.07572 5.27969 5.43242 5.48154 5.56943 5.84177 5.98816 6.04912 6.11918 6.55583 6.62739 6.90661 7.10954 7.17248 7.47785 8.75127 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.036354 B = 0.002714 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.020814 B =10314.034690 C =10815.669200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.025 3.975 3 Si 0.937 3.063 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.234 3.766 10 N -0.707 5.707 11 C 0.499 3.501 12 O -0.580 6.580 13 C 0.049 3.951 14 N -0.543 5.543 15 C 0.058 3.942 16 C 0.071 3.929 17 N -0.457 5.457 18 C 0.371 3.629 19 N -0.550 5.550 20 C -0.047 4.047 21 C -0.041 4.041 22 N -0.569 5.569 23 H 0.431 0.569 24 C 0.086 3.914 25 C 0.061 3.939 26 H 0.272 0.728 27 H 0.009 0.991 28 H 0.011 0.989 29 H 0.409 0.591 30 H 0.130 0.870 31 H 0.090 0.910 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.034 0.966 35 H 0.097 0.903 36 H 0.187 0.813 37 H 0.217 0.783 38 H 0.039 0.961 39 H 0.096 0.904 40 H 0.107 0.893 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.128 -13.240 -5.156 28.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.175 4.175 3 Si 0.761 3.239 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.583 4.583 8 H 0.078 0.922 9 C 0.110 3.890 10 N -0.358 5.358 11 C 0.286 3.714 12 O -0.461 6.461 13 C -0.082 4.082 14 N -0.269 5.269 15 C -0.070 4.070 16 C -0.057 4.057 17 N -0.181 5.181 18 C 0.017 3.983 19 N -0.276 5.276 20 C -0.193 4.193 21 C -0.174 4.174 22 N -0.178 5.178 23 H 0.271 0.729 24 C -0.041 4.041 25 C -0.067 4.067 26 H 0.081 0.919 27 H 0.027 0.973 28 H 0.028 0.972 29 H 0.244 0.756 30 H 0.148 0.852 31 H 0.107 0.893 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.052 0.948 35 H 0.115 0.885 36 H 0.204 0.796 37 H 0.234 0.766 38 H 0.058 0.942 39 H 0.114 0.886 40 H 0.125 0.875 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 24.243 -12.807 -4.384 27.767 hybrid contribution -0.313 1.137 -1.086 1.603 sum 23.931 -11.671 -5.470 27.181 Atomic orbital electron populations 1.69983 1.07673 1.28556 1.50823 1.25607 0.95535 1.02674 0.93699 0.85858 0.79208 0.79401 0.79402 1.18960 1.19983 1.18584 1.21314 0.90053 0.94550 1.52381 0.92156 1.19037 0.93197 0.81255 0.95466 1.46023 1.06840 1.09576 1.73377 1.21265 0.81879 0.92593 0.75630 1.90603 1.56009 1.47980 1.51492 1.21935 0.88493 0.92083 1.05644 1.61734 1.06413 1.23187 1.35553 1.22211 0.93201 1.01315 0.90248 1.22209 0.95164 0.86670 1.01611 1.59074 0.99943 1.22427 1.36615 1.21269 0.89377 1.01417 0.86250 1.70604 1.03757 1.26409 1.26805 1.22659 0.94122 1.05749 0.96819 1.23277 0.86821 1.08278 0.98975 1.43291 1.06549 1.50887 1.17076 0.72869 1.21971 0.94097 1.00738 0.87342 1.22322 0.93032 0.88072 1.03242 0.91900 0.97275 0.97153 0.75550 0.85177 0.89273 0.92927 0.90140 0.94769 0.88517 0.79629 0.76597 0.94212 0.88616 0.87485 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.35 13.96 21.45 0.30 -55.05 16 2 C 0.03 1.41 5.47 84.66 0.46 1.87 16 3 Si 0.94 43.94 27.47 68.60 1.88 45.82 16 4 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 6 H -0.26 -12.21 6.54 99.48 0.65 -11.56 16 7 C -0.55 -29.71 9.83 25.60 0.25 -29.46 16 8 H 0.06 3.44 7.84 -2.91 -0.02 3.42 16 9 C 0.23 11.30 4.50 85.63 0.38 11.69 16 10 N -0.71 -27.02 5.55 -466.78 -2.59 -29.61 16 11 C 0.50 17.56 7.53 87.66 0.66 18.22 16 12 O -0.58 -25.16 14.34 -3.03 -0.04 -25.20 16 13 C 0.05 1.15 5.45 85.56 0.47 1.61 16 14 N -0.54 -13.31 4.45 -900.26 -4.00 -17.31 16 15 C 0.06 1.43 5.26 86.31 0.45 1.88 16 16 C 0.07 1.57 5.53 86.31 0.48 2.05 16 17 N -0.46 -9.88 4.77 -706.07 -3.37 -13.25 16 18 C 0.37 8.26 7.36 260.37 1.92 10.18 16 19 N -0.55 -13.74 10.28 -197.94 -2.04 -15.77 16 20 C -0.05 -0.87 11.84 83.42 0.99 0.11 16 21 C -0.04 -0.54 12.04 82.89 1.00 0.46 16 22 N -0.57 -8.81 6.04 -195.53 -1.18 -10.00 16 23 H 0.43 4.28 8.71 -92.71 -0.81 3.47 16 24 C 0.09 1.85 4.96 86.31 0.43 2.27 16 25 C 0.06 1.13 5.61 86.31 0.48 1.61 16 26 H 0.27 15.07 8.31 -92.70 -0.77 14.30 16 27 H 0.01 0.48 7.20 -2.39 -0.02 0.46 16 28 H 0.01 0.53 7.57 -2.39 -0.02 0.51 16 29 H 0.41 13.41 8.32 -92.70 -0.77 12.64 16 30 H 0.13 2.40 8.03 -2.39 -0.02 2.38 16 31 H 0.09 1.67 8.12 -2.39 -0.02 1.66 16 32 H 0.05 1.13 8.14 -2.38 -0.02 1.12 16 33 H 0.08 2.47 5.85 -2.39 -0.01 2.46 16 34 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.10 1.68 7.73 -2.38 -0.02 1.66 16 36 H 0.19 2.50 8.06 -2.91 -0.02 2.48 16 37 H 0.22 0.95 8.06 -2.91 -0.02 0.93 16 38 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.10 1.98 8.00 -2.39 -0.02 1.96 16 40 H 0.11 1.60 8.07 -2.39 -0.02 1.59 16 41 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -74.86 335.41 -3.65 -78.51 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -0.58 Total: 19.38 kcal Atomic # 6 Polarization: 14.52 SS G_CDS: 7.97 Total: 22.49 kcal Atomic # 7 Polarization: -128.12 SS G_CDS: -12.88 Total: -141.00 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.04 Total: -25.20 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.88 Total: 45.82 kcal Total: -74.86 -3.65 -78.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846876952.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.838 kcal (2) G-P(sol) polarization free energy of solvation -74.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds