Wall clock time and date at job start Tue Mar 31 2020 03:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99965 * 2 1 4 4 H 1.48500 * 109.47092 * 269.99675 * 3 2 1 5 5 H 1.48491 * 109.47021 * 30.00432 * 3 2 1 6 6 H 1.48502 * 109.46838 * 150.00069 * 3 2 1 7 7 C 1.37875 * 119.99938 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00278 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00184 * 359.72619 * 7 2 1 10 10 H 1.09004 * 109.49925 * 60.27133 * 9 7 2 11 11 C 1.53038 * 109.50106 * 180.33894 * 9 7 2 12 12 C 1.53045 * 109.54174 * 181.31318 * 11 9 7 13 13 C 1.53194 * 109.31256 * 298.63830 * 12 11 9 14 14 N 1.46927 * 108.77526 * 54.62870 * 13 12 11 15 15 C 1.34779 * 120.62567 * 126.39165 * 14 13 12 16 16 O 1.21589 * 119.99877 * 174.96394 * 15 14 13 17 17 N 1.34772 * 120.00161 * 354.96261 * 15 14 13 18 18 C 1.46505 * 120.00239 * 185.07262 * 17 15 14 19 19 C 1.52994 * 109.47167 * 180.02562 * 18 17 15 20 20 N 1.46504 * 109.46778 * 180.02562 * 19 18 17 21 21 C 1.34433 * 126.82166 * 124.70924 * 20 19 18 22 22 N 1.30831 * 108.07749 * 179.88978 * 21 20 19 23 23 C 1.33243 * 109.82882 * 0.38641 * 22 21 20 24 24 N 1.30716 * 108.94385 * 359.75647 * 23 22 21 25 25 C 1.46925 * 118.76664 * 306.41332 * 14 13 12 26 26 H 0.97000 * 119.99817 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46251 * 301.33682 * 11 9 7 28 28 H 1.08996 * 109.45818 * 61.30693 * 11 9 7 29 29 H 1.09006 * 109.49261 * 58.58708 * 12 11 9 30 30 H 1.08996 * 109.49556 * 178.68394 * 12 11 9 31 31 H 1.09002 * 109.58295 * 174.41754 * 13 12 11 32 32 H 1.09005 * 109.58400 * 294.84265 * 13 12 11 33 33 H 0.96996 * 120.00255 * 5.07536 * 17 15 14 34 34 H 1.09002 * 109.46874 * 300.00573 * 18 17 15 35 35 H 1.08999 * 109.46708 * 60.00147 * 18 17 15 36 36 H 1.09002 * 109.47415 * 299.99904 * 19 18 17 37 37 H 1.08999 * 109.47462 * 60.00271 * 19 18 17 38 38 H 1.08001 * 125.95746 * 0.04119 * 21 20 19 39 39 H 1.07998 * 125.52785 * 179.72909 * 23 22 21 40 40 H 1.09001 * 109.56469 * 293.78321 * 25 14 13 41 41 H 1.09003 * 109.61569 * 173.35964 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 0.0051 10 1 0.6242 -2.5612 -0.8845 11 6 2.2450 -3.6628 0.0118 12 6 1.4810 -4.9887 -0.0155 13 6 0.6045 -5.0943 1.2364 14 7 -0.2541 -3.9045 1.3143 15 6 -1.5906 -4.0291 1.4356 16 8 -2.2816 -3.0408 1.5911 17 7 -2.1611 -5.2490 1.3846 18 6 -3.6205 -5.3767 1.4047 19 6 -4.0040 -6.8562 1.3379 20 7 -5.4633 -6.9838 1.3573 21 6 -6.2286 -7.6196 0.4534 22 7 -7.4771 -7.5085 0.8284 23 6 -7.5489 -6.8045 1.9574 24 7 -6.3412 -6.4609 2.3208 25 6 0.3713 -2.5763 1.2569 26 1 -0.4850 0.8401 0.0004 27 1 2.8881 -3.5962 -0.8657 28 1 2.8551 -3.6140 0.9137 29 1 0.8516 -5.0276 -0.9047 30 1 2.1898 -5.8166 -0.0343 31 1 -0.0153 -5.9888 1.1741 32 1 1.2375 -5.1467 2.1223 33 1 -1.6056 -6.0425 1.3347 34 1 -4.0106 -4.9417 2.3249 35 1 -4.0428 -4.8524 0.5475 36 1 -3.6138 -7.2916 0.4179 37 1 -3.5817 -7.3802 2.1953 38 1 -5.8744 -8.1347 -0.4274 39 1 -8.4576 -6.5575 2.4863 40 1 0.9849 -2.4230 2.1447 41 1 -0.4019 -1.8095 1.2079 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852126849.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:49 Heat of formation + Delta-G solvation = 43.584440 kcal Electronic energy + Delta-G solvation = -23321.022139 eV Core-core repulsion = 19851.197071 eV Total energy + Delta-G solvation = -3469.825068 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.99344 -41.32213 -38.61936 -36.88475 -35.38924 -34.41632 -33.33511 -32.18615 -31.53081 -29.86580 -27.03681 -26.20058 -24.63409 -23.42808 -22.93166 -22.41758 -21.78158 -20.44603 -19.15505 -18.24397 -18.19608 -17.29438 -16.93368 -16.54412 -16.45006 -15.83859 -15.50806 -15.27369 -15.18074 -15.09661 -14.88787 -14.45305 -14.29545 -13.89608 -13.55501 -13.46105 -13.22828 -12.88963 -12.67074 -12.43717 -12.26330 -12.22003 -11.84501 -11.62370 -11.30539 -11.03705 -10.95774 -10.85878 -10.81524 -10.68671 -10.51259 -10.28073 -9.28470 -8.10699 -6.27706 0.67829 1.20597 1.40037 1.41439 1.51866 1.87266 2.02200 2.20999 2.41723 3.01570 3.19469 3.41908 3.54573 3.74199 4.03347 4.07789 4.17633 4.19308 4.26353 4.31561 4.62481 4.66577 4.73531 4.77597 4.82694 4.88674 5.13544 5.22277 5.28529 5.30177 5.33040 5.40248 5.47442 5.56451 5.64939 5.89421 5.91053 5.97209 6.15090 6.36052 6.85950 7.10484 7.11415 7.42513 7.63996 8.92294 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.024776 B = 0.003145 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.865835 B = 8901.458338 C = 9694.545122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.008 3.992 3 Si 0.957 3.043 4 H -0.275 1.275 5 H -0.290 1.290 6 H -0.261 1.261 7 C -0.535 4.535 8 H 0.063 0.937 9 C 0.039 3.961 10 H -0.013 1.013 11 C -0.107 4.107 12 C -0.125 4.125 13 C 0.108 3.892 14 N -0.625 5.625 15 C 0.694 3.306 16 O -0.643 6.643 17 N -0.726 5.726 18 C 0.136 3.864 19 C 0.131 3.869 20 N -0.384 5.384 21 C 0.268 3.732 22 N -0.579 5.579 23 C 0.193 3.807 24 N -0.358 5.358 25 C 0.143 3.857 26 H 0.258 0.742 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.079 0.921 33 H 0.415 0.585 34 H 0.046 0.954 35 H 0.045 0.955 36 H 0.156 0.844 37 H 0.116 0.884 38 H 0.267 0.733 39 H 0.237 0.763 40 H 0.032 0.968 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.453 -21.913 1.161 22.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.191 4.191 3 Si 0.782 3.218 4 H -0.201 1.201 5 H -0.216 1.216 6 H -0.185 1.185 7 C -0.573 4.573 8 H 0.081 0.919 9 C 0.019 3.981 10 H 0.005 0.995 11 C -0.144 4.144 12 C -0.163 4.163 13 C -0.014 4.014 14 N -0.360 5.360 15 C 0.395 3.605 16 O -0.525 6.525 17 N -0.388 5.388 18 C 0.010 3.990 19 C 0.009 3.991 20 N -0.175 5.175 21 C -0.028 4.028 22 N -0.307 5.307 23 C -0.110 4.110 24 N -0.186 5.186 25 C 0.020 3.980 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.097 0.903 33 H 0.255 0.745 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.174 0.826 37 H 0.134 0.866 38 H 0.282 0.718 39 H 0.253 0.747 40 H 0.051 0.949 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.107 -20.818 1.746 21.506 hybrid contribution 0.435 1.389 -0.121 1.461 sum -4.672 -19.429 1.625 20.049 Atomic orbital electron populations 1.70097 1.07458 1.27158 1.50725 1.25908 0.95525 1.02982 0.94697 0.85575 0.78806 0.79174 0.78249 1.20056 1.21576 1.18511 1.21546 0.93329 0.91557 1.50915 0.91893 1.18916 0.93101 0.93837 0.92208 0.99523 1.21517 0.97645 0.94367 1.00893 1.21911 0.99035 0.97999 0.97342 1.21937 0.93628 0.86578 0.99219 1.47674 1.03898 1.09121 1.75356 1.16159 0.82518 0.83778 0.78005 1.90907 1.63221 1.39260 1.59087 1.44677 1.06792 1.06471 1.80883 1.21119 0.79594 0.96889 1.01373 1.22055 0.73723 0.94930 1.08389 1.50473 1.08321 1.40382 1.18353 1.27053 0.85753 0.94007 0.96005 1.70572 1.20707 1.24091 1.15352 1.26545 0.96849 0.94562 0.93032 1.78072 1.01940 1.23457 1.15085 1.21578 0.96743 0.82010 0.97706 0.93274 0.92985 0.92542 0.92827 0.87518 0.87355 0.90309 0.74466 0.93533 0.93657 0.82628 0.86591 0.71781 0.74685 0.94926 0.90999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.43 11.39 21.45 0.24 -56.19 16 2 C 0.01 0.46 5.30 84.65 0.45 0.91 16 3 Si 0.96 44.55 29.54 68.60 2.03 46.58 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 5 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 6 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.53 -29.35 8.57 25.60 0.22 -29.13 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.04 1.93 2.25 -11.46 -0.03 1.90 16 10 H -0.01 -0.77 8.14 -2.38 -0.02 -0.79 16 11 C -0.11 -3.91 5.11 30.62 0.16 -3.75 16 12 C -0.12 -3.24 6.08 30.67 0.19 -3.05 16 13 C 0.11 2.68 6.43 86.36 0.56 3.23 16 14 N -0.62 -24.15 2.97 -836.88 -2.49 -26.63 16 15 C 0.69 27.91 8.29 179.05 1.49 29.39 16 16 O -0.64 -34.32 15.78 -4.00 -0.06 -34.39 16 17 N -0.73 -18.37 5.47 -478.53 -2.62 -20.99 16 18 C 0.14 3.27 5.89 86.38 0.51 3.77 16 19 C 0.13 1.53 6.67 86.38 0.58 2.11 16 20 N -0.38 -6.67 3.69 -352.06 -1.30 -7.97 16 21 C 0.27 3.75 12.63 180.36 2.28 6.03 16 22 N -0.58 -11.74 11.19 -204.00 -2.28 -14.03 16 23 C 0.19 4.01 13.03 180.76 2.36 6.36 16 24 N -0.36 -8.60 12.57 -61.24 -0.77 -9.37 16 25 C 0.14 7.13 5.38 86.36 0.46 7.59 16 26 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 27 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 30 H 0.11 1.87 8.14 -2.39 -0.02 1.86 16 31 H 0.11 1.61 5.57 -2.39 -0.01 1.60 16 32 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 33 H 0.41 6.30 5.93 -92.71 -0.55 5.75 16 34 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.16 0.39 8.09 -2.39 -0.02 0.37 16 37 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.27 0.68 8.06 -2.91 -0.02 0.65 16 39 H 0.24 3.33 8.06 -2.91 -0.02 3.30 16 40 H 0.03 1.62 8.14 -2.39 -0.02 1.61 16 41 H 0.07 4.39 5.15 -2.39 -0.01 4.37 16 Total: -1.00 -88.08 337.86 2.45 -85.63 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.49 Total: 11.98 kcal Atomic # 6 Polarization: 16.16 SS G_CDS: 9.21 Total: 25.37 kcal Atomic # 7 Polarization: -125.96 SS G_CDS: -9.21 Total: -135.17 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -0.06 Total: -34.39 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -88.08 2.45 -85.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852126849.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.216 kcal (2) G-P(sol) polarization free energy of solvation -88.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds