Wall clock time and date at job start Tue Mar 31 2020 03:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00207 * 2 1 4 4 H 1.48493 * 109.47263 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47076 * 300.00410 * 3 2 1 6 6 H 1.48502 * 109.47038 * 60.00088 * 3 2 1 7 7 C 1.37884 * 120.00076 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99744 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99631 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.52189 * 299.91421 * 9 7 2 11 11 C 1.53042 * 109.49173 * 179.83624 * 9 7 2 12 12 C 1.53078 * 109.65463 * 178.74692 * 11 9 7 13 13 C 1.53189 * 109.29453 * 61.15799 * 12 11 9 14 14 N 1.46932 * 108.89180 * 305.57472 * 13 12 11 15 15 C 1.34781 * 120.62890 * 233.56317 * 14 13 12 16 16 O 1.21588 * 119.99468 * 174.76633 * 15 14 13 17 17 N 1.34772 * 120.00290 * 354.77433 * 15 14 13 18 18 C 1.46502 * 119.99901 * 184.98536 * 17 15 14 19 19 C 1.53003 * 109.46799 * 179.97438 * 18 17 15 20 20 N 1.46502 * 109.46799 * 179.97438 * 19 18 17 21 21 C 1.34432 * 126.82402 * 125.00070 * 20 19 18 22 22 N 1.30832 * 108.07574 * 179.97438 * 21 20 19 23 23 C 1.33246 * 109.83005 * 359.97438 * 22 21 20 24 24 N 1.30714 * 108.94232 * 359.75715 * 23 22 21 25 25 C 1.46917 * 118.73707 * 53.53814 * 14 13 12 26 26 H 0.96998 * 119.99728 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.46233 * 298.69967 * 11 9 7 28 28 H 1.08995 * 109.46279 * 58.67923 * 11 9 7 29 29 H 1.08997 * 109.39233 * 301.27605 * 12 11 9 30 30 H 1.09001 * 109.62401 * 181.16924 * 12 11 9 31 31 H 1.09007 * 109.58777 * 185.72120 * 13 12 11 32 32 H 1.08997 * 109.59363 * 65.43368 * 13 12 11 33 33 H 0.97003 * 119.99816 * 4.97726 * 17 15 14 34 34 H 1.08996 * 109.46964 * 299.99113 * 18 17 15 35 35 H 1.08999 * 109.47255 * 59.99240 * 18 17 15 36 36 H 1.09006 * 109.46835 * 299.99367 * 19 18 17 37 37 H 1.08999 * 109.47637 * 59.99719 * 19 18 17 38 38 H 1.07998 * 125.96195 * 359.97438 * 21 20 19 39 39 H 1.08001 * 125.52424 * 180.02562 * 23 22 21 40 40 H 1.08998 * 109.59125 * 66.18189 * 25 14 13 41 41 H 1.09005 * 109.58783 * 186.60909 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6248 -2.5582 0.8908 11 6 2.2450 -3.6628 -0.0029 12 6 1.4837 -4.9904 0.0286 13 6 0.6033 -5.0988 -1.2204 14 7 -0.2555 -3.9094 -1.3017 15 6 -1.5923 -4.0344 -1.4207 16 8 -2.3002 -3.0463 -1.3913 17 7 -2.1442 -5.2546 -1.5720 18 6 -3.5840 -5.3828 -1.8106 19 6 -3.9487 -6.8626 -1.9456 20 7 -5.3885 -6.9908 -2.1836 21 6 -5.9824 -7.6305 -3.2060 22 7 -7.2774 -7.5170 -3.0586 23 6 -7.5473 -6.8154 -1.9584 24 7 -6.4228 -6.4756 -1.3853 25 6 0.3705 -2.5813 -1.2504 26 1 -0.4849 0.8400 0.0004 27 1 2.8543 -3.6173 -0.9056 28 1 2.8889 -3.5930 0.8737 29 1 0.8571 -5.0273 0.9197 30 1 2.1923 -5.8185 0.0470 31 1 -0.0165 -5.9931 -1.1541 32 1 1.2334 -5.1559 -2.1079 33 1 -1.5881 -6.0479 -1.5230 34 1 -4.1310 -4.9484 -0.9739 35 1 -3.8482 -4.8585 -2.7289 36 1 -3.4016 -7.2967 -2.7826 37 1 -3.6844 -7.3873 -1.0275 38 1 -5.4784 -8.1478 -4.0089 39 1 -8.5351 -6.5711 -1.5965 40 1 0.9835 -2.4316 -2.1391 41 1 -0.4027 -1.8143 -1.2039 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852126861.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:51 Heat of formation + Delta-G solvation = 43.331508 kcal Electronic energy + Delta-G solvation = -23293.864324 eV Core-core repulsion = 19824.028288 eV Total energy + Delta-G solvation = -3469.836036 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.99176 -41.31440 -38.61610 -36.87599 -35.38742 -34.41566 -33.33769 -32.18632 -31.53345 -29.86226 -27.03622 -26.19725 -24.62893 -23.43604 -22.92596 -22.41846 -21.77664 -20.46032 -19.13438 -18.24876 -18.19303 -17.30113 -16.86021 -16.68980 -16.37927 -15.82584 -15.44225 -15.31786 -15.19444 -15.09370 -14.83067 -14.49587 -14.28442 -13.93519 -13.54218 -13.47761 -13.19229 -12.91732 -12.65081 -12.44370 -12.27296 -12.20712 -11.84431 -11.62124 -11.28803 -11.03062 -10.95346 -10.85224 -10.81446 -10.68698 -10.52680 -10.28160 -9.27820 -8.09956 -6.27653 0.68601 1.20818 1.39503 1.40931 1.52969 1.88556 2.02464 2.19812 2.41757 3.02897 3.19511 3.42566 3.54681 3.74320 4.03264 4.07372 4.17484 4.18464 4.27757 4.31025 4.62645 4.66224 4.73912 4.78429 4.82321 4.87966 5.12793 5.22204 5.28068 5.29101 5.32576 5.40240 5.47321 5.56819 5.65664 5.89890 5.91932 5.98099 6.15271 6.36158 6.86548 7.10935 7.11680 7.42644 7.64939 8.92991 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.025856 B = 0.003101 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.668208 B = 9026.536901 C = 9866.546184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.007 3.993 3 Si 0.957 3.043 4 H -0.258 1.258 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.534 4.534 8 H 0.063 0.937 9 C 0.037 3.963 10 H -0.018 1.018 11 C -0.106 4.106 12 C -0.127 4.127 13 C 0.109 3.891 14 N -0.625 5.625 15 C 0.693 3.307 16 O -0.642 6.642 17 N -0.726 5.726 18 C 0.136 3.864 19 C 0.131 3.869 20 N -0.384 5.384 21 C 0.269 3.731 22 N -0.579 5.579 23 C 0.193 3.807 24 N -0.360 5.360 25 C 0.142 3.858 26 H 0.258 0.742 27 H 0.059 0.941 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.084 0.916 33 H 0.415 0.585 34 H 0.041 0.959 35 H 0.051 0.949 36 H 0.160 0.840 37 H 0.112 0.888 38 H 0.269 0.731 39 H 0.236 0.764 40 H 0.038 0.962 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.872 -21.919 -7.084 23.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.192 4.192 3 Si 0.783 3.217 4 H -0.182 1.182 5 H -0.209 1.209 6 H -0.211 1.211 7 C -0.572 4.572 8 H 0.082 0.918 9 C 0.017 3.983 10 H 0.000 1.000 11 C -0.143 4.143 12 C -0.165 4.165 13 C -0.013 4.013 14 N -0.361 5.361 15 C 0.394 3.606 16 O -0.524 6.524 17 N -0.388 5.388 18 C 0.010 3.990 19 C 0.009 3.991 20 N -0.176 5.176 21 C -0.027 4.027 22 N -0.307 5.307 23 C -0.110 4.110 24 N -0.187 5.187 25 C 0.019 3.981 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.103 0.897 33 H 0.255 0.745 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.178 0.822 37 H 0.130 0.870 38 H 0.284 0.716 39 H 0.252 0.748 40 H 0.056 0.944 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.619 -20.825 -6.618 22.334 hybrid contribution 0.383 1.373 0.306 1.458 sum -4.236 -19.452 -6.312 20.885 Atomic orbital electron populations 1.70123 1.07479 1.27071 1.50740 1.25929 0.95521 1.03030 0.94728 0.85513 0.79358 0.79489 0.77349 1.18222 1.20893 1.21061 1.21566 0.93312 0.91490 1.50853 0.91848 1.18925 0.93125 0.93898 0.92305 0.99967 1.21514 0.97624 0.94240 1.00951 1.21928 0.99066 0.98124 0.97391 1.21921 0.93617 0.86523 0.99210 1.47671 1.03850 1.09124 1.75411 1.16172 0.82580 0.83810 0.78000 1.90921 1.61951 1.39320 1.60166 1.44684 1.08711 1.06431 1.78968 1.21119 0.80191 0.96903 1.00764 1.22057 0.74420 0.94928 1.07694 1.50468 1.07418 1.40500 1.19170 1.27074 0.88938 0.93851 0.92844 1.70573 1.15188 1.24012 1.20942 1.26535 0.99112 0.94681 0.90660 1.78095 0.96774 1.23817 1.20057 1.21570 0.96732 0.82058 0.97730 0.93294 0.92199 0.93197 0.93473 0.87427 0.87517 0.89735 0.74478 0.94092 0.93050 0.82241 0.87004 0.71597 0.74773 0.94393 0.90984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.88 11.39 21.45 0.24 -56.64 16 2 C 0.01 0.41 5.30 84.66 0.45 0.86 16 3 Si 0.96 44.73 29.54 68.60 2.03 46.75 16 4 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 6 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 7 C -0.53 -29.47 8.56 25.60 0.22 -29.25 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 9 C 0.04 1.86 2.26 -11.46 -0.03 1.83 16 10 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 11 C -0.11 -3.93 5.10 30.63 0.16 -3.78 16 12 C -0.13 -3.42 6.09 30.68 0.19 -3.24 16 13 C 0.11 2.69 6.38 86.36 0.55 3.24 16 14 N -0.62 -24.09 2.97 -836.91 -2.49 -26.58 16 15 C 0.69 27.83 8.29 179.05 1.49 29.32 16 16 O -0.64 -34.44 15.77 -3.99 -0.06 -34.50 16 17 N -0.73 -18.21 5.46 -478.53 -2.62 -20.83 16 18 C 0.14 3.23 5.90 86.38 0.51 3.73 16 19 C 0.13 1.50 6.66 86.38 0.58 2.07 16 20 N -0.38 -6.58 3.69 -352.05 -1.30 -7.87 16 21 C 0.27 3.59 12.63 180.36 2.28 5.87 16 22 N -0.58 -11.52 11.19 -204.00 -2.28 -13.80 16 23 C 0.19 4.02 13.03 180.76 2.36 6.38 16 24 N -0.36 -8.76 12.57 -61.24 -0.77 -9.53 16 25 C 0.14 7.08 5.41 86.36 0.47 7.55 16 26 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 27 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.11 1.61 5.65 -2.38 -0.01 1.59 16 32 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.41 6.22 5.96 -92.71 -0.55 5.67 16 34 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.16 0.22 8.09 -2.38 -0.02 0.20 16 37 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.27 0.39 8.06 -2.91 -0.02 0.37 16 39 H 0.24 3.37 8.06 -2.91 -0.02 3.35 16 40 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.07 4.40 5.11 -2.38 -0.01 4.38 16 Total: -1.00 -89.31 337.92 2.45 -86.87 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: 0.49 Total: 11.54 kcal Atomic # 6 Polarization: 15.38 SS G_CDS: 9.21 Total: 24.59 kcal Atomic # 7 Polarization: -126.04 SS G_CDS: -9.21 Total: -135.25 kcal Atomic # 8 Polarization: -34.44 SS G_CDS: -0.06 Total: -34.50 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -89.31 2.45 -86.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852126861.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.198 kcal (2) G-P(sol) polarization free energy of solvation -89.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds