Wall clock time and date at job start Tue Mar 31 2020 03:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34952 * 126.03231 * 2 1 4 4 C 1.35323 * 107.74283 * 179.97438 * 3 2 1 5 5 C 1.50694 * 126.03771 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.47564 * 341.15362 * 5 4 3 7 7 O 1.42899 * 109.46852 * 221.15365 * 5 4 3 8 8 C 1.50702 * 109.47237 * 101.15729 * 5 4 3 9 9 O 1.21276 * 120.00373 * 109.45482 * 8 5 4 10 10 N 1.34779 * 119.99879 * 289.45405 * 8 5 4 11 11 C 1.46924 * 120.62879 * 354.66823 * 10 8 5 12 12 C 1.53195 * 108.77617 * 233.58379 * 11 10 8 13 13 C 1.53040 * 109.31106 * 305.36586 * 12 11 10 14 14 C 1.53046 * 109.53931 * 61.36083 * 13 12 11 15 15 H 1.08997 * 109.49449 * 58.61817 * 14 13 12 16 16 C 1.50697 * 109.49715 * 178.68352 * 14 13 12 17 17 H 1.08002 * 120.00232 * 120.00385 * 16 14 13 18 18 C 1.37878 * 120.00235 * 299.99949 * 16 14 13 19 19 N 1.31519 * 119.99804 * 0.02562 * 18 16 14 20 20 Si 1.86795 * 120.00232 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47208 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47170 * 119.99954 * 20 18 16 23 23 H 1.48497 * 109.47320 * 240.00080 * 20 18 16 24 24 C 1.46918 * 120.63319 * 174.63714 * 10 8 5 25 25 C 1.39868 * 107.91814 * 0.25766 * 4 3 2 26 26 N 1.30835 * 108.20496 * 359.55773 * 25 4 3 27 27 H 1.09002 * 109.46414 * 90.00860 * 1 2 3 28 28 H 1.09001 * 109.46940 * 210.00416 * 1 2 3 29 29 H 1.08992 * 109.47409 * 330.00723 * 1 2 3 30 30 H 1.07996 * 126.12979 * 359.97438 * 3 2 1 31 31 H 0.96700 * 114.00577 * 299.99611 * 7 5 4 32 32 H 1.09001 * 109.58861 * 353.36877 * 11 10 8 33 33 H 1.08998 * 109.58938 * 113.79935 * 11 10 8 34 34 H 1.08995 * 109.50418 * 185.41328 * 12 11 10 35 35 H 1.08999 * 109.49851 * 65.31316 * 12 11 10 36 36 H 1.09003 * 109.46000 * 301.34142 * 13 12 11 37 37 H 1.08994 * 109.46075 * 181.38260 * 13 12 11 38 38 H 0.97001 * 119.99819 * 179.97438 * 19 18 16 39 39 H 1.09009 * 109.58540 * 6.63248 * 24 10 8 40 40 H 1.08998 * 109.59610 * 246.20446 * 24 10 8 41 41 H 1.08001 * 125.89902 * 179.74222 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6667 0.0006 5 6 4.7679 1.5455 0.0002 6 1 4.4961 2.5472 -0.3325 7 8 5.7466 0.9985 -0.8858 8 6 5.3360 1.6160 1.3943 9 8 6.3861 1.0656 1.6498 10 7 4.6772 2.2909 2.3571 11 6 3.4664 3.0594 2.0377 12 6 3.6455 4.4944 2.5433 13 6 3.9975 4.4661 4.0324 14 6 5.3160 3.7153 4.2325 15 1 6.1045 4.2064 3.6623 16 6 5.6782 3.7160 5.6953 17 1 5.7864 2.7812 6.2253 18 6 5.8715 4.9100 6.3572 19 7 5.7394 6.0483 5.7119 20 14 6.3198 4.9108 8.1705 21 1 6.4064 3.5113 8.6597 22 1 7.6317 5.5815 8.3559 23 1 5.2782 5.6402 8.9376 24 6 5.1557 2.2715 3.7460 25 6 3.5347 -0.7320 -0.0050 26 7 2.2892 -1.1327 0.0007 27 1 -0.3632 -0.0002 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5137 30 1 1.9281 2.1194 -0.0004 31 1 6.0359 0.1064 -0.6500 32 1 3.3135 3.0686 0.9585 33 1 2.6052 2.6045 2.5270 34 1 2.7186 5.0494 2.3991 35 1 4.4496 4.9779 1.9885 36 1 3.2045 3.9606 4.5835 37 1 4.1014 5.4868 4.4004 38 1 5.8750 6.8884 6.1776 39 1 6.1176 1.7609 3.7941 40 1 4.4323 1.7524 4.3747 41 1 4.4054 -1.3709 -0.0100 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855257022.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:21 Heat of formation + Delta-G solvation = -5.190068 kcal Electronic energy + Delta-G solvation = -24305.070712 eV Core-core repulsion = 20800.837872 eV Total energy + Delta-G solvation = -3504.232841 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.56703 -39.67215 -37.25458 -35.97378 -33.66970 -33.33108 -31.59492 -31.09743 -30.02158 -27.91138 -26.10713 -25.11628 -24.02509 -21.83794 -21.26887 -21.02796 -19.91567 -18.64881 -17.69085 -17.17981 -16.36181 -15.91560 -15.63173 -15.35453 -14.71430 -14.59107 -14.43585 -13.87665 -13.68094 -13.49214 -13.12908 -13.01159 -12.84092 -12.77523 -12.58760 -12.19217 -12.02605 -11.87751 -11.16106 -11.01283 -10.88530 -10.72725 -10.63830 -10.33137 -9.99305 -9.82399 -9.62312 -9.51434 -9.35779 -8.86920 -8.46519 -8.40494 -7.92023 -6.03739 -4.10684 1.65091 2.28210 2.50599 3.01863 3.27586 3.35891 3.39513 3.49133 4.26611 4.41098 4.48127 4.54154 4.76887 4.84770 4.91601 4.97345 5.11203 5.20081 5.22290 5.28330 5.54495 5.59102 5.69656 5.84562 6.04008 6.28417 6.35311 6.37257 6.43997 6.62744 6.73509 6.77212 6.93662 7.12534 7.29237 7.44869 7.55314 7.67288 7.89126 7.98367 8.05257 8.35313 8.57956 8.93116 9.54393 11.01796 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.022535 B = 0.004134 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.195752 B = 6771.336660 C = 7211.827360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.374 5.374 3 C 0.074 3.926 4 C -0.266 4.266 5 C 0.173 3.827 6 H 0.123 0.877 7 O -0.534 6.534 8 C 0.488 3.512 9 O -0.545 6.545 10 N -0.595 5.595 11 C 0.111 3.889 12 C -0.137 4.137 13 C -0.112 4.112 14 C 0.040 3.960 15 H 0.030 0.970 16 C -0.513 4.513 17 H 0.057 0.943 18 C 0.063 3.937 19 N -0.889 5.889 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.117 3.883 25 C 0.066 3.934 26 N -0.294 5.294 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.179 0.821 31 H 0.381 0.619 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.035 0.965 37 H 0.096 0.904 38 H 0.260 0.740 39 H 0.079 0.921 40 H 0.054 0.946 41 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.850 -7.367 -12.736 18.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.155 5.155 3 C -0.073 4.073 4 C -0.278 4.278 5 C 0.109 3.891 6 H 0.140 0.860 7 O -0.338 6.338 8 C 0.274 3.726 9 O -0.423 6.423 10 N -0.327 5.327 11 C -0.012 4.012 12 C -0.175 4.175 13 C -0.150 4.150 14 C 0.020 3.980 15 H 0.049 0.951 16 C -0.552 4.552 17 H 0.075 0.925 18 C -0.138 4.138 19 N -0.528 5.528 20 Si 0.720 3.280 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.211 1.211 24 C -0.004 4.004 25 C -0.120 4.120 26 N -0.115 5.115 27 H 0.093 0.907 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.196 0.804 31 H 0.230 0.770 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.053 0.947 37 H 0.114 0.886 38 H 0.070 0.930 39 H 0.097 0.903 40 H 0.072 0.928 41 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -12.322 -7.923 -12.861 19.493 hybrid contribution 0.618 0.430 1.374 1.566 sum -11.704 -7.493 -11.487 18.030 Atomic orbital electron populations 1.21893 0.73974 1.04771 1.03406 1.48492 1.06747 1.03751 1.56550 1.22376 0.90425 0.93629 1.00893 1.20401 0.94441 0.94668 1.18302 1.19892 0.84459 0.96797 0.87912 0.85962 1.86565 1.59287 1.36625 1.51370 1.21270 0.84745 0.79170 0.87372 1.90668 1.22329 1.47327 1.81967 1.48226 1.26871 1.47891 1.09753 1.21840 0.87198 0.93157 0.98988 1.22044 1.00769 0.94028 1.00707 1.21625 0.97881 1.04830 0.90654 1.18976 0.94096 0.88824 0.96054 0.95149 1.21116 1.47107 0.92610 0.94369 0.92459 1.24932 0.95110 0.95557 0.98192 1.69879 1.49662 0.97244 1.35986 0.86528 0.78076 0.78141 0.85220 1.19739 1.20991 1.21063 1.22003 0.99248 1.01147 0.78024 1.23647 0.95409 0.94133 0.98843 1.77374 1.01434 1.08116 1.24570 0.90651 0.89212 0.89212 0.80447 0.77015 0.91539 0.92104 0.92414 0.92153 0.94665 0.88566 0.93030 0.90274 0.92804 0.79992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.60 11.47 59.85 0.69 1.29 16 2 N -0.37 -3.91 4.01 -68.16 -0.27 -4.19 16 3 C 0.07 0.75 9.92 -17.22 -0.17 0.58 16 4 C -0.27 -3.24 4.73 -105.05 -0.50 -3.74 16 5 C 0.17 2.37 3.04 -29.04 -0.09 2.28 16 6 H 0.12 1.48 6.86 -51.93 -0.36 1.12 16 7 O -0.53 -7.50 12.97 -54.92 -0.71 -8.21 16 8 C 0.49 8.71 7.01 -10.98 -0.08 8.64 16 9 O -0.54 -11.65 15.72 -14.12 -0.22 -11.87 16 10 N -0.59 -10.74 2.97 -172.77 -0.51 -11.25 16 11 C 0.11 1.61 5.21 -3.71 -0.02 1.59 16 12 C -0.14 -2.30 6.08 -26.61 -0.16 -2.46 16 13 C -0.11 -2.44 4.96 -26.69 -0.13 -2.57 16 14 C 0.04 0.96 2.25 -91.65 -0.21 0.76 16 15 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 16 C -0.51 -13.83 8.56 -34.44 -0.29 -14.12 16 17 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 18 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 19 N -0.89 -24.72 11.31 55.43 0.63 -24.09 16 20 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 C 0.12 2.51 5.66 -3.71 -0.02 2.49 16 25 C 0.07 0.83 11.45 -17.37 -0.20 0.63 16 26 N -0.29 -3.82 12.58 30.62 0.39 -3.44 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.18 1.23 6.92 -52.49 -0.36 0.87 16 31 H 0.38 4.49 8.06 45.56 0.37 4.85 16 32 H 0.07 0.74 3.76 -51.93 -0.20 0.54 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.10 2.39 6.04 -51.93 -0.31 2.08 16 38 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 39 H 0.08 1.85 7.00 -51.92 -0.36 1.48 16 40 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.18 1.90 7.78 -52.49 -0.41 1.49 16 LS Contribution 331.82 15.07 5.00 5.00 Total: -1.00 -33.61 331.82 -6.98 -40.60 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -4.98 Total: 4.48 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -1.28 Total: -3.01 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: 0.23 Total: -42.97 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.93 Total: -20.08 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.61 -6.98 -40.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855257022.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.407 kcal (2) G-P(sol) polarization free energy of solvation -33.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds