Wall clock time and date at job start Tue Mar 31 2020 03:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34952 * 126.03231 * 2 1 4 4 C 1.35323 * 107.74283 * 179.97438 * 3 2 1 5 5 C 1.50694 * 126.03771 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.47564 * 341.15362 * 5 4 3 7 7 O 1.42899 * 109.46852 * 221.15365 * 5 4 3 8 8 C 1.50702 * 109.47237 * 101.15729 * 5 4 3 9 9 O 1.21276 * 120.00373 * 109.45482 * 8 5 4 10 10 N 1.34779 * 119.99879 * 289.45405 * 8 5 4 11 11 C 1.46924 * 120.62879 * 354.66823 * 10 8 5 12 12 C 1.53195 * 108.77617 * 233.58379 * 11 10 8 13 13 C 1.53040 * 109.31106 * 305.36586 * 12 11 10 14 14 C 1.53046 * 109.53931 * 61.36083 * 13 12 11 15 15 H 1.08997 * 109.49449 * 58.61817 * 14 13 12 16 16 C 1.50697 * 109.49715 * 178.68352 * 14 13 12 17 17 H 1.08002 * 120.00232 * 120.00385 * 16 14 13 18 18 C 1.37878 * 120.00235 * 299.99949 * 16 14 13 19 19 N 1.31519 * 119.99804 * 0.02562 * 18 16 14 20 20 Si 1.86795 * 120.00232 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47208 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47170 * 119.99954 * 20 18 16 23 23 H 1.48497 * 109.47320 * 240.00080 * 20 18 16 24 24 C 1.46918 * 120.63319 * 174.63714 * 10 8 5 25 25 C 1.39868 * 107.91814 * 0.25766 * 4 3 2 26 26 N 1.30835 * 108.20496 * 359.55773 * 25 4 3 27 27 H 1.09002 * 109.46414 * 90.00860 * 1 2 3 28 28 H 1.09001 * 109.46940 * 210.00416 * 1 2 3 29 29 H 1.08992 * 109.47409 * 330.00723 * 1 2 3 30 30 H 1.07996 * 126.12979 * 359.97438 * 3 2 1 31 31 H 0.96700 * 114.00577 * 299.99611 * 7 5 4 32 32 H 1.09001 * 109.58861 * 353.36877 * 11 10 8 33 33 H 1.08998 * 109.58938 * 113.79935 * 11 10 8 34 34 H 1.08995 * 109.50418 * 185.41328 * 12 11 10 35 35 H 1.08999 * 109.49851 * 65.31316 * 12 11 10 36 36 H 1.09003 * 109.46000 * 301.34142 * 13 12 11 37 37 H 1.08994 * 109.46075 * 181.38260 * 13 12 11 38 38 H 0.97001 * 119.99819 * 179.97438 * 19 18 16 39 39 H 1.09009 * 109.58540 * 6.63248 * 24 10 8 40 40 H 1.08998 * 109.59610 * 246.20446 * 24 10 8 41 41 H 1.08001 * 125.89902 * 179.74222 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6667 0.0006 5 6 4.7679 1.5455 0.0002 6 1 4.4961 2.5472 -0.3325 7 8 5.7466 0.9985 -0.8858 8 6 5.3360 1.6160 1.3943 9 8 6.3861 1.0656 1.6498 10 7 4.6772 2.2909 2.3571 11 6 3.4664 3.0594 2.0377 12 6 3.6455 4.4944 2.5433 13 6 3.9975 4.4661 4.0324 14 6 5.3160 3.7153 4.2325 15 1 6.1045 4.2064 3.6623 16 6 5.6782 3.7160 5.6953 17 1 5.7864 2.7812 6.2253 18 6 5.8715 4.9100 6.3572 19 7 5.7394 6.0483 5.7119 20 14 6.3198 4.9108 8.1705 21 1 6.4064 3.5113 8.6597 22 1 7.6317 5.5815 8.3559 23 1 5.2782 5.6402 8.9376 24 6 5.1557 2.2715 3.7460 25 6 3.5347 -0.7320 -0.0050 26 7 2.2892 -1.1327 0.0007 27 1 -0.3632 -0.0002 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5137 30 1 1.9281 2.1194 -0.0004 31 1 6.0359 0.1064 -0.6500 32 1 3.3135 3.0686 0.9585 33 1 2.6052 2.6045 2.5270 34 1 2.7186 5.0494 2.3991 35 1 4.4496 4.9779 1.9885 36 1 3.2045 3.9606 4.5835 37 1 4.1014 5.4868 4.4004 38 1 5.8750 6.8884 6.1776 39 1 6.1176 1.7609 3.7941 40 1 4.4323 1.7524 4.3747 41 1 4.4054 -1.3709 -0.0100 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855257022.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:20 Heat of formation + Delta-G solvation = -29.281465 kcal Electronic energy + Delta-G solvation = -24306.115394 eV Core-core repulsion = 20800.837872 eV Total energy + Delta-G solvation = -3505.277522 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.44009 -41.01539 -38.69411 -37.23355 -35.43411 -34.10487 -33.17969 -32.39140 -31.45791 -28.81071 -27.23816 -26.79219 -25.44492 -23.38141 -22.15878 -22.09872 -21.25137 -20.10500 -18.74510 -18.52911 -18.12421 -17.25186 -16.72714 -16.33168 -16.28141 -15.79083 -15.47284 -15.17068 -15.00965 -14.97099 -14.61899 -14.27582 -13.79192 -13.76325 -13.58860 -13.50274 -13.37240 -13.06701 -12.89250 -12.67141 -12.56662 -12.22023 -11.89453 -11.85450 -11.59353 -11.55385 -11.23397 -10.83918 -10.64394 -10.43775 -10.38776 -9.47813 -9.40059 -8.10655 -6.25629 0.87497 1.39120 1.41907 1.46642 1.52746 1.65330 1.76805 2.12407 2.43802 3.15830 3.43301 3.50006 3.64078 3.82288 4.08511 4.10976 4.24733 4.30192 4.34362 4.36755 4.50157 4.53914 4.61181 4.76227 4.78354 4.83165 4.87694 4.97102 4.98396 5.13747 5.30629 5.48646 5.51582 5.57872 5.62110 5.94869 6.07706 6.15374 6.35465 6.45873 6.61441 6.67396 6.83858 7.18189 7.42510 8.92943 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.022535 B = 0.004134 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.195752 B = 6771.336660 C = 7211.827360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.372 5.372 3 C 0.089 3.911 4 C -0.288 4.288 5 C 0.190 3.810 6 H 0.147 0.853 7 O -0.544 6.544 8 C 0.480 3.520 9 O -0.591 6.591 10 N -0.598 5.598 11 C 0.112 3.888 12 C -0.130 4.130 13 C -0.106 4.106 14 C 0.041 3.959 15 H -0.014 1.014 16 C -0.538 4.538 17 H 0.049 0.951 18 C 0.019 3.981 19 N -0.912 5.912 20 Si 0.953 3.047 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.275 1.275 24 C 0.130 3.870 25 C 0.052 3.948 26 N -0.327 5.327 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.119 0.881 30 H 0.219 0.781 31 H 0.388 0.612 32 H 0.111 0.889 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.046 0.954 36 H 0.037 0.963 37 H 0.062 0.938 38 H 0.262 0.738 39 H 0.049 0.951 40 H 0.058 0.942 41 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.572 -6.956 -13.767 21.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.153 5.153 3 C -0.059 4.059 4 C -0.300 4.300 5 C 0.127 3.873 6 H 0.164 0.836 7 O -0.350 6.350 8 C 0.269 3.731 9 O -0.472 6.472 10 N -0.330 5.330 11 C -0.009 4.009 12 C -0.168 4.168 13 C -0.144 4.144 14 C 0.021 3.979 15 H 0.004 0.996 16 C -0.577 4.577 17 H 0.068 0.932 18 C -0.180 4.180 19 N -0.551 5.551 20 Si 0.779 3.221 21 H -0.195 1.195 22 H -0.209 1.209 23 H -0.200 1.200 24 C 0.007 3.993 25 C -0.133 4.133 26 N -0.149 5.149 27 H 0.110 0.890 28 H 0.106 0.894 29 H 0.137 0.863 30 H 0.235 0.765 31 H 0.238 0.762 32 H 0.129 0.871 33 H 0.100 0.900 34 H 0.115 0.885 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -15.087 -7.525 -13.913 21.859 hybrid contribution 1.445 0.293 1.690 2.243 sum -13.641 -7.232 -12.224 19.693 Atomic orbital electron populations 1.22290 0.71506 1.06191 1.04994 1.48870 1.08151 1.03171 1.55109 1.22924 0.89504 0.95120 0.98378 1.20282 0.94678 0.94226 1.20858 1.19824 0.84613 0.98374 0.84529 0.83601 1.86533 1.59768 1.37358 1.51300 1.22255 0.84008 0.77900 0.88927 1.90639 1.24492 1.49085 1.83013 1.48288 1.28023 1.48469 1.08207 1.22113 0.86032 0.90903 1.01888 1.21964 1.02074 0.96295 0.96459 1.21414 0.96250 1.02090 0.94618 1.18880 0.94252 0.90538 0.94184 0.99599 1.21469 1.47693 0.92523 0.96002 0.93236 1.25651 0.95013 0.95232 1.02139 1.70008 1.50028 0.97622 1.37413 0.85581 0.77846 0.78140 0.80530 1.19506 1.20911 1.20014 1.21524 0.98191 0.98831 0.80709 1.23865 0.95725 0.94843 0.98901 1.77329 1.01885 1.09867 1.25839 0.88969 0.89402 0.86264 0.76497 0.76165 0.87115 0.90029 0.88499 0.93541 0.94424 0.91912 0.92921 0.93247 0.92341 0.79600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.72 11.47 127.77 1.47 2.19 16 2 N -0.37 -6.48 4.01 -369.56 -1.48 -7.96 16 3 C 0.09 1.41 9.92 83.54 0.83 2.24 16 4 C -0.29 -6.24 4.73 -20.14 -0.10 -6.33 16 5 C 0.19 4.78 3.04 29.10 0.09 4.87 16 6 H 0.15 2.93 6.86 -2.39 -0.02 2.91 16 7 O -0.54 -14.65 12.97 -130.16 -1.69 -16.34 16 8 C 0.48 16.89 7.01 87.66 0.61 17.50 16 9 O -0.59 -26.02 15.72 15.81 0.25 -25.77 16 10 N -0.60 -21.01 2.97 -818.91 -2.43 -23.44 16 11 C 0.11 2.82 5.21 86.36 0.45 3.27 16 12 C -0.13 -4.02 6.08 30.67 0.19 -3.84 16 13 C -0.11 -4.58 4.96 30.62 0.15 -4.43 16 14 C 0.04 2.04 2.25 -11.46 -0.03 2.02 16 15 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 16 C -0.54 -29.94 8.56 25.60 0.22 -29.72 16 17 H 0.05 2.75 7.74 -2.91 -0.02 2.72 16 18 C 0.02 1.04 5.30 84.65 0.45 1.49 16 19 N -0.91 -51.80 11.31 21.45 0.24 -51.56 16 20 Si 0.95 43.63 29.54 68.60 2.03 45.66 16 21 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 22 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 23 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 24 C 0.13 5.75 5.66 86.36 0.49 6.24 16 25 C 0.05 1.24 11.45 85.24 0.98 2.22 16 26 N -0.33 -7.96 12.58 -57.02 -0.72 -8.68 16 27 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.09 0.76 8.14 -2.39 -0.02 0.75 16 29 H 0.12 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.22 1.50 6.92 -2.91 -0.02 1.48 16 31 H 0.39 9.10 8.06 -74.06 -0.60 8.50 16 32 H 0.11 1.84 3.76 -2.39 -0.01 1.83 16 33 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.05 1.57 8.14 -2.39 -0.02 1.56 16 36 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.06 3.16 6.04 -2.39 -0.01 3.14 16 38 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 39 H 0.05 2.44 7.00 -2.38 -0.02 2.42 16 40 H 0.06 2.49 8.14 -2.39 -0.02 2.48 16 41 H 0.19 3.90 7.78 -2.91 -0.02 3.88 16 Total: -1.00 -77.37 331.82 2.45 -74.92 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.46 Total: 15.46 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: 5.80 Total: -2.29 kcal Atomic # 7 Polarization: -87.24 SS G_CDS: -4.39 Total: -91.63 kcal Atomic # 8 Polarization: -40.68 SS G_CDS: -1.44 Total: -42.12 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -77.37 2.45 -74.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855257022.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.641 kcal (2) G-P(sol) polarization free energy of solvation -77.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds