Wall clock time and date at job start Tue Mar 31 2020 03:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34944 * 126.03408 * 2 1 4 4 C 1.35319 * 107.74528 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.04074 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47012 * 341.87790 * 5 4 3 7 7 O 1.42893 * 109.47555 * 221.87468 * 5 4 3 8 8 C 1.50704 * 109.47021 * 101.87314 * 5 4 3 9 9 O 1.21274 * 119.99700 * 105.44443 * 8 5 4 10 10 N 1.34781 * 120.00030 * 285.44865 * 8 5 4 11 11 C 1.46922 * 120.63078 * 354.61414 * 10 8 5 12 12 C 1.53194 * 108.89030 * 126.46078 * 11 10 8 13 13 C 1.53046 * 109.30994 * 54.56953 * 12 11 10 14 14 C 1.53039 * 109.53604 * 298.62788 * 13 12 11 15 15 H 1.09000 * 109.50098 * 301.38933 * 14 13 12 16 16 C 1.50695 * 109.49943 * 181.31496 * 14 13 12 17 17 H 1.07998 * 120.00330 * 240.00691 * 16 14 13 18 18 C 1.37873 * 119.99663 * 60.00406 * 16 14 13 19 19 N 1.31513 * 120.00234 * 359.97438 * 18 16 14 20 20 Si 1.86801 * 120.00147 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.46988 * 60.00182 * 20 18 16 22 22 H 1.48502 * 109.47571 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47312 * 300.00170 * 20 18 16 24 24 C 1.46955 * 120.65160 * 174.43584 * 10 8 5 25 25 C 1.39870 * 107.91996 * 0.26344 * 4 3 2 26 26 N 1.30841 * 108.19858 * 359.55809 * 25 4 3 27 27 H 1.09005 * 109.46701 * 90.00266 * 1 2 3 28 28 H 1.09003 * 109.47212 * 209.99643 * 1 2 3 29 29 H 1.08991 * 109.47376 * 330.00404 * 1 2 3 30 30 H 1.08006 * 126.13011 * 0.03696 * 3 2 1 31 31 H 0.96693 * 114.00122 * 300.00392 * 7 5 4 32 32 H 1.09002 * 109.58784 * 6.61225 * 11 10 8 33 33 H 1.08997 * 109.59101 * 246.32564 * 11 10 8 34 34 H 1.09000 * 109.49617 * 174.51456 * 12 11 10 35 35 H 1.08993 * 109.50113 * 294.61639 * 12 11 10 36 36 H 1.09001 * 109.46024 * 58.65382 * 13 12 11 37 37 H 1.08998 * 109.45881 * 178.62719 * 13 12 11 38 38 H 0.97010 * 120.00326 * 179.97438 * 19 18 16 39 39 H 1.08999 * 109.46989 * 113.75160 * 24 10 8 40 40 H 1.09005 * 109.59810 * 353.39399 * 24 10 8 41 41 H 1.07996 * 125.89916 * 179.73112 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6666 -0.0006 5 6 4.7679 1.5454 -0.0013 6 1 4.4934 2.5506 -0.3210 7 8 5.7395 1.0081 -0.9010 8 6 5.3472 1.6010 1.3888 9 8 6.3608 0.9879 1.6483 10 7 4.7387 2.3321 2.3437 11 6 3.5789 3.1731 2.0173 12 6 2.4255 2.8146 2.9596 13 6 2.9005 2.9345 4.4095 14 6 4.0479 1.9520 4.6551 15 1 3.7090 0.9373 4.4461 16 6 4.4934 2.0477 6.0915 17 1 5.5106 2.3264 6.3239 18 6 3.6025 1.7797 7.1089 19 7 2.3636 1.4409 6.8259 20 14 4.1548 1.8977 8.8895 21 1 4.6183 3.2797 9.1734 22 1 3.0173 1.5642 9.7839 23 1 5.2679 0.9438 9.1267 24 6 5.2197 2.3006 3.7319 25 6 3.5347 -0.7320 -0.0071 26 7 2.2892 -1.1327 -0.0007 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5137 30 1 1.9280 2.1194 0.0006 31 1 6.0305 0.1136 -0.6772 32 1 3.2767 2.9943 0.9854 33 1 3.8417 4.2232 2.1444 34 1 1.5930 3.4979 2.7919 35 1 2.1021 1.7919 2.7661 36 1 3.2469 3.9512 4.5953 37 1 2.0747 2.7036 5.0825 38 1 1.7368 1.2519 7.5417 39 1 5.6180 3.2790 4.0007 40 1 6.0002 1.5462 3.8314 41 1 4.4054 -1.3709 -0.0132 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855257023.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:23 Heat of formation + Delta-G solvation = -28.970676 kcal Electronic energy + Delta-G solvation = -24687.690075 eV Core-core repulsion = 21182.426030 eV Total energy + Delta-G solvation = -3505.264045 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.44860 -40.99957 -38.69623 -37.22314 -35.43381 -34.11465 -33.14460 -32.46521 -31.43855 -28.81391 -27.25888 -26.78471 -25.44770 -23.35078 -22.20177 -22.14491 -21.30586 -19.95202 -18.81319 -18.60340 -18.11821 -17.23050 -16.65429 -16.35979 -16.32153 -15.72872 -15.51189 -15.21662 -15.07037 -14.93530 -14.54110 -14.33230 -13.88061 -13.75321 -13.60695 -13.47567 -13.38183 -13.01849 -12.86580 -12.65820 -12.62290 -12.22456 -11.91016 -11.84960 -11.60449 -11.56365 -11.25442 -10.85231 -10.64417 -10.44765 -10.38618 -9.47929 -9.39045 -8.11808 -6.26768 0.87683 1.40003 1.41556 1.43419 1.49151 1.65656 1.80966 2.12604 2.42837 3.14751 3.43216 3.52586 3.63522 3.81160 4.07217 4.10480 4.24825 4.26681 4.32141 4.37473 4.47787 4.55180 4.61144 4.73066 4.76956 4.84064 4.88387 4.95145 4.98482 5.13605 5.29202 5.47911 5.51541 5.57678 5.60651 5.93700 6.07597 6.14482 6.34427 6.45497 6.61007 6.66594 6.82484 7.17946 7.41307 8.91290 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.017202 B = 0.005140 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.305180 B = 5445.993561 C = 6248.297177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.372 5.372 3 C 0.091 3.909 4 C -0.290 4.290 5 C 0.192 3.808 6 H 0.155 0.845 7 O -0.542 6.542 8 C 0.481 3.519 9 O -0.591 6.591 10 N -0.598 5.598 11 C 0.105 3.895 12 C -0.122 4.122 13 C -0.106 4.106 14 C 0.045 3.955 15 H -0.020 1.020 16 C -0.539 4.539 17 H 0.051 0.949 18 C 0.019 3.981 19 N -0.912 5.912 20 Si 0.953 3.047 21 H -0.267 1.267 22 H -0.282 1.282 23 H -0.278 1.278 24 C 0.129 3.871 25 C 0.049 3.951 26 N -0.331 5.331 27 H 0.097 0.903 28 H 0.083 0.917 29 H 0.116 0.884 30 H 0.218 0.782 31 H 0.388 0.612 32 H 0.110 0.890 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.040 0.960 36 H 0.039 0.961 37 H 0.061 0.939 38 H 0.261 0.739 39 H 0.062 0.938 40 H 0.047 0.953 41 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.354 4.388 -16.412 18.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.153 5.153 3 C -0.058 4.058 4 C -0.302 4.302 5 C 0.128 3.872 6 H 0.172 0.828 7 O -0.348 6.348 8 C 0.269 3.731 9 O -0.472 6.472 10 N -0.330 5.330 11 C -0.016 4.016 12 C -0.160 4.160 13 C -0.144 4.144 14 C 0.026 3.974 15 H -0.002 1.002 16 C -0.578 4.578 17 H 0.069 0.931 18 C -0.181 4.181 19 N -0.551 5.551 20 Si 0.778 3.222 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.204 1.204 24 C 0.006 3.994 25 C -0.136 4.136 26 N -0.153 5.153 27 H 0.116 0.884 28 H 0.101 0.899 29 H 0.134 0.866 30 H 0.235 0.765 31 H 0.238 0.762 32 H 0.127 0.873 33 H 0.106 0.894 34 H 0.115 0.885 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -7.058 3.573 -16.494 18.293 hybrid contribution 0.974 -0.417 1.901 2.176 sum -6.084 3.157 -14.593 16.123 Atomic orbital electron populations 1.22273 0.71710 1.05956 1.05058 1.48832 1.08112 1.03253 1.55080 1.22883 0.89578 0.95023 0.98290 1.20341 0.94967 0.94146 1.20787 1.19859 0.84319 0.98587 0.84441 0.82820 1.86508 1.60074 1.37169 1.51014 1.22237 0.83714 0.78069 0.89031 1.90631 1.26750 1.47026 1.82814 1.48299 1.31530 1.44907 1.08290 1.22132 0.84569 0.94868 1.00066 1.21865 0.97946 1.01003 0.95153 1.21409 0.99846 0.97516 0.95609 1.18824 0.92303 0.93695 0.92562 1.00196 1.21420 0.96945 1.47184 0.92225 0.93116 1.25652 0.94993 0.94554 1.02850 1.69997 1.04642 1.47151 1.33311 0.85697 0.77691 0.78868 0.79919 1.19155 1.20750 1.20371 1.21557 0.97376 1.00252 0.80165 1.23864 0.95635 0.95146 0.98976 1.77315 1.02046 1.10021 1.25885 0.88414 0.89870 0.86562 0.76511 0.76233 0.87251 0.89400 0.88515 0.94128 0.94258 0.92020 0.92984 0.91983 0.93418 0.79782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.19 11.47 127.77 1.47 2.65 16 2 N -0.37 -8.34 4.01 -369.56 -1.48 -9.82 16 3 C 0.09 1.79 9.99 83.54 0.83 2.62 16 4 C -0.29 -7.19 4.81 -20.14 -0.10 -7.29 16 5 C 0.19 4.83 3.03 29.10 0.09 4.92 16 6 H 0.15 2.79 6.86 -2.39 -0.02 2.77 16 7 O -0.54 -14.33 13.01 -130.36 -1.70 -16.03 16 8 C 0.48 16.83 6.97 87.66 0.61 17.45 16 9 O -0.59 -25.72 15.75 15.61 0.25 -25.47 16 10 N -0.60 -20.90 2.98 -818.81 -2.44 -23.34 16 11 C 0.11 2.62 5.88 86.36 0.51 3.13 16 12 C -0.12 -3.67 6.08 30.67 0.19 -3.49 16 13 C -0.11 -4.54 4.96 30.62 0.15 -4.39 16 14 C 0.05 2.27 2.25 -11.46 -0.03 2.24 16 15 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 16 C -0.54 -29.89 8.56 25.60 0.22 -29.67 16 17 H 0.05 2.79 7.74 -2.91 -0.02 2.76 16 18 C 0.02 1.03 5.30 84.65 0.45 1.48 16 19 N -0.91 -51.82 11.31 21.45 0.24 -51.58 16 20 Si 0.95 43.57 29.54 68.60 2.03 45.60 16 21 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 22 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 23 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 24 C 0.13 5.67 5.64 86.36 0.49 6.16 16 25 C 0.05 1.40 11.45 85.24 0.98 2.37 16 26 N -0.33 -9.78 12.58 -57.02 -0.72 -10.50 16 27 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 28 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.22 2.20 6.90 -2.91 -0.02 2.18 16 31 H 0.39 9.33 8.04 -74.06 -0.60 8.73 16 32 H 0.11 1.81 3.24 -2.39 -0.01 1.80 16 33 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.04 1.37 7.95 -2.39 -0.02 1.35 16 36 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.06 3.08 6.04 -2.39 -0.01 3.07 16 38 H 0.26 14.15 8.31 -92.70 -0.77 13.38 16 39 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 40 H 0.05 2.35 7.05 -2.38 -0.02 2.33 16 41 H 0.19 4.69 7.80 -2.91 -0.02 4.67 16 Total: -1.00 -77.24 331.98 2.49 -74.75 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.46 Total: 18.20 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: 5.85 Total: -1.81 kcal Atomic # 7 Polarization: -90.84 SS G_CDS: -4.40 Total: -95.24 kcal Atomic # 8 Polarization: -40.05 SS G_CDS: -1.45 Total: -41.50 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -77.24 2.49 -74.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855257023.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.781 kcal (2) G-P(sol) polarization free energy of solvation -77.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds