Wall clock time and date at job start Tue Mar 31 2020 03:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34942 * 126.04138 * 2 1 4 4 C 1.35320 * 107.75091 * 180.24591 * 3 2 1 5 5 C 1.50699 * 126.04535 * 179.76917 * 4 3 2 6 6 H 1.08999 * 109.46714 * 19.00971 * 5 4 3 7 7 O 1.42894 * 109.47080 * 139.00270 * 5 4 3 8 8 C 1.50697 * 109.47159 * 259.01150 * 5 4 3 9 9 O 1.21287 * 119.99706 * 251.44745 * 8 5 4 10 10 N 1.34774 * 120.00530 * 71.44916 * 8 5 4 11 11 C 1.46933 * 120.62633 * 5.42291 * 10 8 5 12 12 C 1.53189 * 108.77221 * 126.37277 * 11 10 8 13 13 C 1.53041 * 109.31525 * 54.63109 * 12 11 10 14 14 C 1.53041 * 109.54105 * 298.64018 * 13 12 11 15 15 H 1.09009 * 109.48940 * 301.37752 * 14 13 12 16 16 C 1.50695 * 109.49866 * 181.31438 * 14 13 12 17 17 H 1.07998 * 120.00026 * 239.99155 * 16 14 13 18 18 C 1.37879 * 119.99969 * 59.99897 * 16 14 13 19 19 N 1.31511 * 120.00089 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 119.99923 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47171 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47256 * 119.99949 * 20 18 16 23 23 H 1.48502 * 109.47205 * 239.99627 * 20 18 16 24 24 C 1.46927 * 120.63206 * 185.14852 * 10 8 5 25 25 C 1.39878 * 107.91430 * 359.64030 * 4 3 2 26 26 N 1.30831 * 108.20153 * 0.36185 * 25 4 3 27 27 H 1.08996 * 109.47188 * 90.00131 * 1 2 3 28 28 H 1.08999 * 109.47261 * 210.00369 * 1 2 3 29 29 H 1.09007 * 109.46972 * 330.00142 * 1 2 3 30 30 H 1.07997 * 126.12910 * 359.97438 * 3 2 1 31 31 H 0.96702 * 113.99706 * 60.00775 * 7 5 4 32 32 H 1.08997 * 109.58168 * 246.15784 * 11 10 8 33 33 H 1.08994 * 109.58717 * 6.44358 * 11 10 8 34 34 H 1.08996 * 109.49768 * 174.58686 * 12 11 10 35 35 H 1.09001 * 109.49732 * 294.68506 * 12 11 10 36 36 H 1.09004 * 109.45609 * 58.65713 * 13 12 11 37 37 H 1.08997 * 109.46037 * 178.62944 * 13 12 11 38 38 H 0.97006 * 120.00049 * 180.02562 * 19 18 16 39 39 H 1.08999 * 109.58651 * 353.41530 * 24 10 8 40 40 H 1.08996 * 109.58555 * 113.84191 * 24 10 8 41 41 H 1.07999 * 125.89105 * 180.13915 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0911 0.0000 4 6 3.5437 0.6665 -0.0055 5 6 4.7681 1.5451 -0.0125 6 1 4.4983 2.5467 0.3223 7 8 5.7520 0.9978 0.8674 8 6 5.3275 1.6161 -1.4100 9 8 6.3675 1.0519 -1.6762 10 7 4.6721 2.3067 -2.3640 11 6 3.4761 3.0926 -2.0310 12 6 3.6747 4.5275 -2.5292 13 6 4.0155 4.5028 -4.0210 14 6 5.3202 3.7321 -4.2353 15 1 6.1206 4.2071 -3.6679 16 6 5.6717 3.7360 -5.7007 17 1 5.7611 2.8029 -6.2371 18 6 5.8795 4.9309 -6.3567 19 7 5.7703 6.0672 -5.7036 20 14 6.3160 4.9356 -8.1729 21 1 6.3775 3.5380 -8.6709 22 1 5.2810 5.6859 -8.9288 23 1 7.6369 5.5870 -8.3629 24 6 5.1435 2.2927 -3.7555 25 6 3.5346 -0.7323 -0.0007 26 7 2.2891 -1.1328 -0.0004 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3633 0.8901 0.5138 30 1 1.9282 2.1192 -0.0004 31 1 6.0398 0.1058 0.6295 32 1 2.6042 2.6545 -2.5167 33 1 3.3298 3.0955 -0.9509 34 1 2.7579 5.0964 -2.3748 35 1 4.4905 4.9945 -1.9774 36 1 3.2104 4.0135 -4.5693 37 1 4.1334 5.5240 -4.3835 38 1 5.9161 6.9078 -6.1652 39 1 6.0984 1.7702 -3.8126 40 1 4.4103 1.7882 -4.3846 41 1 4.4054 -1.3711 -0.0011 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855257024.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:26 Heat of formation + Delta-G solvation = -5.345663 kcal Electronic energy + Delta-G solvation = -24297.154155 eV Core-core repulsion = 20792.914567 eV Total energy + Delta-G solvation = -3504.239588 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.56383 -39.67650 -37.26300 -35.97317 -33.67144 -33.33328 -31.59450 -31.09421 -30.04463 -27.90993 -26.10623 -25.11564 -24.03227 -21.83358 -21.26986 -21.02927 -19.91711 -18.64235 -17.68630 -17.18765 -16.36403 -15.92765 -15.62471 -15.35162 -14.71634 -14.58625 -14.43249 -13.87337 -13.68235 -13.49680 -13.17505 -12.97544 -12.84261 -12.77328 -12.58957 -12.19334 -12.02882 -11.87711 -11.16118 -11.01219 -10.88255 -10.72987 -10.63968 -10.32865 -9.99380 -9.82527 -9.62403 -9.51018 -9.35725 -8.86871 -8.46502 -8.40490 -7.92392 -6.03759 -4.10719 1.65196 2.28299 2.50459 3.01947 3.27586 3.35896 3.39528 3.49106 4.25786 4.41087 4.48412 4.54224 4.76013 4.86265 4.91207 4.97620 5.11352 5.19948 5.22387 5.28337 5.54461 5.59107 5.69658 5.84656 6.04052 6.28369 6.35561 6.37354 6.44508 6.62827 6.73597 6.77577 6.94266 7.12512 7.29292 7.44913 7.55391 7.67280 7.89100 7.98286 8.05391 8.35222 8.57857 8.93117 9.54374 11.01797 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.022577 B = 0.004122 C = 0.003877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.923143 B = 6791.016793 C = 7220.272056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.374 5.374 3 C 0.074 3.926 4 C -0.266 4.266 5 C 0.173 3.827 6 H 0.123 0.877 7 O -0.534 6.534 8 C 0.488 3.512 9 O -0.545 6.545 10 N -0.595 5.595 11 C 0.111 3.889 12 C -0.137 4.137 13 C -0.112 4.112 14 C 0.039 3.961 15 H 0.030 0.970 16 C -0.513 4.513 17 H 0.057 0.943 18 C 0.064 3.936 19 N -0.889 5.889 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.117 3.883 25 C 0.066 3.934 26 N -0.294 5.294 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.178 0.822 31 H 0.381 0.619 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.035 0.965 37 H 0.096 0.904 38 H 0.260 0.740 39 H 0.079 0.921 40 H 0.054 0.946 41 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.860 -7.340 12.872 18.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.155 5.155 3 C -0.073 4.073 4 C -0.278 4.278 5 C 0.109 3.891 6 H 0.140 0.860 7 O -0.339 6.339 8 C 0.275 3.725 9 O -0.423 6.423 10 N -0.327 5.327 11 C -0.012 4.012 12 C -0.175 4.175 13 C -0.150 4.150 14 C 0.020 3.980 15 H 0.048 0.952 16 C -0.552 4.552 17 H 0.075 0.925 18 C -0.138 4.138 19 N -0.528 5.528 20 Si 0.720 3.280 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.004 4.004 25 C -0.120 4.120 26 N -0.115 5.115 27 H 0.095 0.905 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.195 0.805 31 H 0.230 0.770 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.053 0.947 37 H 0.114 0.886 38 H 0.070 0.930 39 H 0.097 0.903 40 H 0.072 0.928 41 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -12.334 -7.904 12.998 19.584 hybrid contribution 0.613 0.438 -1.399 1.589 sum -11.720 -7.466 11.599 18.101 Atomic orbital electron populations 1.21892 0.73978 1.04523 1.03655 1.48488 1.06747 1.03757 1.56553 1.22364 0.90424 0.93631 1.00899 1.20402 0.94438 0.94666 1.18305 1.19893 0.84413 0.96797 0.87957 0.85967 1.86565 1.58925 1.36634 1.51732 1.21268 0.84553 0.79293 0.87430 1.90670 1.22856 1.47111 1.81675 1.48232 1.27829 1.46831 1.09848 1.21833 0.87531 0.92919 0.98909 1.22040 1.00788 0.93986 1.00720 1.21624 0.97901 1.04865 0.90594 1.18900 0.94174 0.88856 0.96089 0.95183 1.21110 1.47272 0.92670 0.94145 0.92457 1.24930 0.95102 0.95564 0.98184 1.69877 1.49651 0.97311 1.35915 0.86529 0.78054 0.78138 0.85246 1.19738 1.21059 1.20989 1.21909 0.99314 1.01189 0.77961 1.23651 0.95406 0.94138 0.98828 1.77373 1.01438 1.08104 1.24584 0.90498 0.89266 0.89302 0.80465 0.77005 0.92100 0.91547 0.92402 0.92153 0.94659 0.88558 0.93027 0.90275 0.92817 0.79982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.60 11.47 59.84 0.69 1.29 16 2 N -0.37 -3.92 4.01 -68.17 -0.27 -4.19 16 3 C 0.07 0.75 9.99 -17.22 -0.17 0.58 16 4 C -0.27 -3.25 4.76 -105.05 -0.50 -3.75 16 5 C 0.17 2.37 3.04 -29.04 -0.09 2.29 16 6 H 0.12 1.48 6.80 -51.93 -0.35 1.13 16 7 O -0.53 -7.51 12.97 -54.87 -0.71 -8.22 16 8 C 0.49 8.73 7.00 -10.99 -0.08 8.65 16 9 O -0.54 -11.65 15.72 -14.09 -0.22 -11.88 16 10 N -0.59 -10.75 2.98 -173.04 -0.52 -11.27 16 11 C 0.11 1.61 5.27 -3.71 -0.02 1.59 16 12 C -0.14 -2.31 6.08 -26.61 -0.16 -2.47 16 13 C -0.11 -2.44 4.96 -26.69 -0.13 -2.57 16 14 C 0.04 0.95 2.24 -91.88 -0.21 0.74 16 15 H 0.03 0.83 8.14 -51.92 -0.42 0.40 16 16 C -0.51 -13.83 8.56 -34.44 -0.29 -14.13 16 17 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 18 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 19 N -0.89 -24.73 11.31 55.43 0.63 -24.10 16 20 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C 0.12 2.53 5.64 -3.94 -0.02 2.51 16 25 C 0.07 0.83 11.45 -17.36 -0.20 0.63 16 26 N -0.29 -3.83 12.57 30.63 0.39 -3.44 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.09 0.30 8.14 -51.92 -0.42 -0.12 16 30 H 0.18 1.23 6.94 -52.49 -0.36 0.87 16 31 H 0.38 4.49 8.05 45.56 0.37 4.86 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.74 3.81 -51.93 -0.20 0.54 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.10 2.40 6.04 -51.93 -0.31 2.08 16 38 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 39 H 0.08 1.85 7.00 -51.93 -0.36 1.49 16 40 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.18 1.90 7.78 -52.49 -0.41 1.49 16 LS Contribution 331.94 15.07 5.00 5.00 Total: -1.00 -33.63 331.94 -6.99 -40.62 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -4.98 Total: 4.50 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -1.28 Total: -3.01 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 0.22 Total: -43.00 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.93 Total: -20.09 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.63 -6.99 -40.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855257024.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.273 kcal (2) G-P(sol) polarization free energy of solvation -33.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds