Wall clock time and date at job start Tue Mar 31 2020 03:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34942 * 126.04138 * 2 1 4 4 C 1.35320 * 107.75091 * 180.24591 * 3 2 1 5 5 C 1.50699 * 126.04535 * 179.76917 * 4 3 2 6 6 H 1.08999 * 109.46714 * 19.00971 * 5 4 3 7 7 O 1.42894 * 109.47080 * 139.00270 * 5 4 3 8 8 C 1.50697 * 109.47159 * 259.01150 * 5 4 3 9 9 O 1.21287 * 119.99706 * 251.44745 * 8 5 4 10 10 N 1.34774 * 120.00530 * 71.44916 * 8 5 4 11 11 C 1.46933 * 120.62633 * 5.42291 * 10 8 5 12 12 C 1.53189 * 108.77221 * 126.37277 * 11 10 8 13 13 C 1.53041 * 109.31525 * 54.63109 * 12 11 10 14 14 C 1.53041 * 109.54105 * 298.64018 * 13 12 11 15 15 H 1.09009 * 109.48940 * 301.37752 * 14 13 12 16 16 C 1.50695 * 109.49866 * 181.31438 * 14 13 12 17 17 H 1.07998 * 120.00026 * 239.99155 * 16 14 13 18 18 C 1.37879 * 119.99969 * 59.99897 * 16 14 13 19 19 N 1.31511 * 120.00089 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 119.99923 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47171 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47256 * 119.99949 * 20 18 16 23 23 H 1.48502 * 109.47205 * 239.99627 * 20 18 16 24 24 C 1.46927 * 120.63206 * 185.14852 * 10 8 5 25 25 C 1.39878 * 107.91430 * 359.64030 * 4 3 2 26 26 N 1.30831 * 108.20153 * 0.36185 * 25 4 3 27 27 H 1.08996 * 109.47188 * 90.00131 * 1 2 3 28 28 H 1.08999 * 109.47261 * 210.00369 * 1 2 3 29 29 H 1.09007 * 109.46972 * 330.00142 * 1 2 3 30 30 H 1.07997 * 126.12910 * 359.97438 * 3 2 1 31 31 H 0.96702 * 113.99706 * 60.00775 * 7 5 4 32 32 H 1.08997 * 109.58168 * 246.15784 * 11 10 8 33 33 H 1.08994 * 109.58717 * 6.44358 * 11 10 8 34 34 H 1.08996 * 109.49768 * 174.58686 * 12 11 10 35 35 H 1.09001 * 109.49732 * 294.68506 * 12 11 10 36 36 H 1.09004 * 109.45609 * 58.65713 * 13 12 11 37 37 H 1.08997 * 109.46037 * 178.62944 * 13 12 11 38 38 H 0.97006 * 120.00049 * 180.02562 * 19 18 16 39 39 H 1.08999 * 109.58651 * 353.41530 * 24 10 8 40 40 H 1.08996 * 109.58555 * 113.84191 * 24 10 8 41 41 H 1.07999 * 125.89105 * 180.13915 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0911 0.0000 4 6 3.5437 0.6665 -0.0055 5 6 4.7681 1.5451 -0.0125 6 1 4.4983 2.5467 0.3223 7 8 5.7520 0.9978 0.8674 8 6 5.3275 1.6161 -1.4100 9 8 6.3675 1.0519 -1.6762 10 7 4.6721 2.3067 -2.3640 11 6 3.4761 3.0926 -2.0310 12 6 3.6747 4.5275 -2.5292 13 6 4.0155 4.5028 -4.0210 14 6 5.3202 3.7321 -4.2353 15 1 6.1206 4.2071 -3.6679 16 6 5.6717 3.7360 -5.7007 17 1 5.7611 2.8029 -6.2371 18 6 5.8795 4.9309 -6.3567 19 7 5.7703 6.0672 -5.7036 20 14 6.3160 4.9356 -8.1729 21 1 6.3775 3.5380 -8.6709 22 1 5.2810 5.6859 -8.9288 23 1 7.6369 5.5870 -8.3629 24 6 5.1435 2.2927 -3.7555 25 6 3.5346 -0.7323 -0.0007 26 7 2.2891 -1.1328 -0.0004 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3633 0.8901 0.5138 30 1 1.9282 2.1192 -0.0004 31 1 6.0398 0.1058 0.6295 32 1 2.6042 2.6545 -2.5167 33 1 3.3298 3.0955 -0.9509 34 1 2.7579 5.0964 -2.3748 35 1 4.4905 4.9945 -1.9774 36 1 3.2104 4.0135 -4.5693 37 1 4.1334 5.5240 -4.3835 38 1 5.9161 6.9078 -6.1652 39 1 6.0984 1.7702 -3.8126 40 1 4.4103 1.7882 -4.3846 41 1 4.4054 -1.3711 -0.0011 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855257024.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:25 Heat of formation + Delta-G solvation = -29.459592 kcal Electronic energy + Delta-G solvation = -24298.199814 eV Core-core repulsion = 20792.914567 eV Total energy + Delta-G solvation = -3505.285246 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.43792 -41.02261 -38.70550 -37.23365 -35.43800 -34.10649 -33.18284 -32.39501 -31.47589 -28.81001 -27.24215 -26.79097 -25.45531 -23.38028 -22.16386 -22.09792 -21.25129 -20.10162 -18.74960 -18.53044 -18.12962 -17.26153 -16.72745 -16.33021 -16.27719 -15.79792 -15.47245 -15.17252 -15.01144 -14.97890 -14.62323 -14.28141 -13.78994 -13.77379 -13.59405 -13.48593 -13.38496 -13.06294 -12.89250 -12.67402 -12.56981 -12.21894 -11.89466 -11.85786 -11.59907 -11.55339 -11.23484 -10.84180 -10.64430 -10.43891 -10.39131 -9.48352 -9.40266 -8.10821 -6.25822 0.87351 1.39046 1.41829 1.46431 1.52693 1.65095 1.76770 2.12307 2.43689 3.15692 3.43074 3.50346 3.63701 3.82107 4.08798 4.10730 4.24596 4.30050 4.34246 4.36267 4.49686 4.53648 4.61413 4.76090 4.78742 4.83134 4.87701 4.97086 4.98191 5.13956 5.30346 5.48450 5.51491 5.57434 5.61903 5.94557 6.07706 6.15376 6.35234 6.45767 6.61258 6.67231 6.83665 7.17889 7.42345 8.92821 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.022577 B = 0.004122 C = 0.003877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.923143 B = 6791.016793 C = 7220.272056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.372 5.372 3 C 0.089 3.911 4 C -0.288 4.288 5 C 0.190 3.810 6 H 0.147 0.853 7 O -0.544 6.544 8 C 0.480 3.520 9 O -0.591 6.591 10 N -0.598 5.598 11 C 0.112 3.888 12 C -0.130 4.130 13 C -0.105 4.105 14 C 0.040 3.960 15 H -0.014 1.014 16 C -0.538 4.538 17 H 0.049 0.951 18 C 0.019 3.981 19 N -0.911 5.911 20 Si 0.953 3.047 21 H -0.271 1.271 22 H -0.275 1.275 23 H -0.283 1.283 24 C 0.131 3.869 25 C 0.052 3.948 26 N -0.327 5.327 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.123 0.877 30 H 0.219 0.781 31 H 0.388 0.612 32 H 0.081 0.919 33 H 0.111 0.889 34 H 0.097 0.903 35 H 0.046 0.954 36 H 0.037 0.963 37 H 0.063 0.937 38 H 0.262 0.738 39 H 0.049 0.951 40 H 0.058 0.942 41 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.574 -6.897 13.954 21.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.153 5.153 3 C -0.059 4.059 4 C -0.301 4.301 5 C 0.127 3.873 6 H 0.164 0.836 7 O -0.350 6.350 8 C 0.269 3.731 9 O -0.472 6.472 10 N -0.330 5.330 11 C -0.010 4.010 12 C -0.168 4.168 13 C -0.144 4.144 14 C 0.021 3.979 15 H 0.004 0.996 16 C -0.577 4.577 17 H 0.068 0.932 18 C -0.180 4.180 19 N -0.551 5.551 20 Si 0.779 3.221 21 H -0.195 1.195 22 H -0.200 1.200 23 H -0.209 1.209 24 C 0.008 3.992 25 C -0.133 4.133 26 N -0.149 5.149 27 H 0.103 0.897 28 H 0.109 0.891 29 H 0.141 0.859 30 H 0.235 0.765 31 H 0.238 0.762 32 H 0.100 0.900 33 H 0.129 0.871 34 H 0.115 0.885 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -15.090 -7.475 14.101 21.964 hybrid contribution 1.439 0.291 -1.735 2.273 sum -13.651 -7.184 12.366 19.771 Atomic orbital electron populations 1.22288 0.71507 1.06401 1.04772 1.48866 1.08152 1.03175 1.55121 1.22917 0.89501 0.95129 0.98359 1.20285 0.94685 0.94223 1.20859 1.19826 0.84578 0.98381 0.84551 0.83581 1.86533 1.59407 1.37362 1.51654 1.22258 0.83799 0.78030 0.89002 1.90641 1.25009 1.48856 1.82732 1.48295 1.28950 1.47446 1.08297 1.22105 0.86415 0.90615 1.01823 1.21959 1.02055 0.96302 0.96463 1.21413 0.96288 1.02096 0.94573 1.18804 0.94251 0.90614 0.94232 0.99632 1.21462 1.47868 0.92585 0.95777 0.93235 1.25650 0.94985 0.95236 1.02153 1.70005 1.50003 0.97689 1.37355 0.85580 0.77838 0.78145 0.80528 1.19508 1.20006 1.20903 1.21430 0.98249 0.98861 0.80671 1.23868 0.95721 0.94854 0.98887 1.77327 1.01890 1.09867 1.25845 0.89698 0.89053 0.85904 0.76497 0.76161 0.90037 0.87093 0.88498 0.93537 0.94425 0.91896 0.92913 0.93256 0.92385 0.79598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.72 11.47 127.77 1.47 2.19 16 2 N -0.37 -6.50 4.01 -369.58 -1.48 -7.98 16 3 C 0.09 1.42 9.99 83.54 0.83 2.25 16 4 C -0.29 -6.25 4.76 -20.14 -0.10 -6.35 16 5 C 0.19 4.78 3.04 29.10 0.09 4.87 16 6 H 0.15 2.92 6.80 -2.39 -0.02 2.91 16 7 O -0.54 -14.65 12.97 -130.20 -1.69 -16.34 16 8 C 0.48 16.91 7.00 87.66 0.61 17.52 16 9 O -0.59 -26.04 15.72 15.73 0.25 -25.79 16 10 N -0.60 -21.05 2.98 -819.75 -2.44 -23.49 16 11 C 0.11 2.83 5.27 86.36 0.45 3.28 16 12 C -0.13 -4.03 6.08 30.67 0.19 -3.84 16 13 C -0.11 -4.59 4.96 30.62 0.15 -4.44 16 14 C 0.04 2.02 2.24 -11.61 -0.03 2.00 16 15 H -0.01 -0.85 8.14 -2.38 -0.02 -0.87 16 16 C -0.54 -29.97 8.56 25.60 0.22 -29.75 16 17 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 18 C 0.02 1.05 5.30 84.66 0.45 1.50 16 19 N -0.91 -51.81 11.31 21.45 0.24 -51.57 16 20 Si 0.95 43.65 29.54 68.60 2.03 45.68 16 21 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 22 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 23 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 24 C 0.13 5.78 5.64 86.22 0.49 6.27 16 25 C 0.05 1.25 11.45 85.24 0.98 2.22 16 26 N -0.33 -7.98 12.57 -57.02 -0.72 -8.70 16 27 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.12 0.17 8.14 -2.38 -0.02 0.15 16 30 H 0.22 1.50 6.94 -2.91 -0.02 1.48 16 31 H 0.39 9.11 8.05 -74.06 -0.60 8.52 16 32 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.11 1.84 3.81 -2.39 -0.01 1.83 16 34 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 37 H 0.06 3.17 6.04 -2.39 -0.01 3.16 16 38 H 0.26 14.10 8.31 -92.70 -0.77 13.33 16 39 H 0.05 2.44 7.00 -2.39 -0.02 2.42 16 40 H 0.06 2.48 8.14 -2.39 -0.02 2.47 16 41 H 0.19 3.91 7.78 -2.91 -0.02 3.89 16 Total: -1.00 -77.45 331.94 2.45 -75.00 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 0.46 Total: 15.48 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: 5.80 Total: -2.29 kcal Atomic # 7 Polarization: -87.34 SS G_CDS: -4.40 Total: -91.74 kcal Atomic # 8 Polarization: -40.69 SS G_CDS: -1.44 Total: -42.13 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -77.45 2.45 -75.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855257024.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.543 kcal (2) G-P(sol) polarization free energy of solvation -77.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds